Wall clock time and date at job start Mon Mar 30 2020 04:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34334 * 126.16650 * 2 1 4 4 O 1.34746 * 107.11387 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75591 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.61642 * 180.26668 * 5 4 3 7 7 C 1.50703 * 109.46764 * 269.68347 * 6 5 4 8 8 O 1.21277 * 120.00466 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99725 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00090 * 0.02562 * 9 7 6 11 11 C 1.46504 * 119.99887 * 180.02562 * 9 7 6 12 12 H 1.08997 * 109.46993 * 359.97438 * 11 9 7 13 13 C 1.53006 * 109.47012 * 240.00018 * 11 9 7 14 14 C 1.50701 * 109.47191 * 120.00199 * 11 9 7 15 15 H 1.07997 * 119.99928 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99868 * 179.97438 * 14 11 9 17 17 N 1.31516 * 120.00402 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00006 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.46851 * 59.99807 * 18 16 14 20 20 H 1.48493 * 109.46982 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47151 * 300.00537 * 18 16 14 22 22 N 1.30254 * 108.75949 * 359.97438 * 5 4 3 23 23 H 1.08994 * 109.47502 * 269.98801 * 1 2 3 24 24 H 1.09009 * 109.47109 * 29.98755 * 1 2 3 25 25 H 1.09001 * 109.46902 * 149.98202 * 1 2 3 26 26 H 1.07997 * 126.44323 * 0.05719 * 3 2 1 27 27 H 1.08997 * 109.47697 * 29.68419 * 6 5 4 28 28 H 1.09003 * 109.46973 * 149.68825 * 6 5 4 29 29 H 1.09001 * 109.47558 * 89.99996 * 10 9 7 30 30 H 1.08998 * 109.47153 * 209.99894 * 10 9 7 31 31 H 1.09005 * 109.47072 * 329.99752 * 10 9 7 32 32 H 1.08998 * 109.47045 * 300.00459 * 13 11 9 33 33 H 1.09005 * 109.46975 * 59.99884 * 13 11 9 34 34 H 1.08995 * 109.47082 * 179.97438 * 13 11 9 35 35 H 0.96993 * 120.00106 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5734 0.6446 -0.0006 5 6 3.5431 -0.6947 -0.0015 6 6 4.7480 -1.5999 0.0033 7 6 5.1511 -1.9070 -1.4159 8 8 4.5224 -1.4368 -2.3403 9 7 6.2106 -2.7042 -1.6580 10 6 6.9698 -3.2726 -0.5414 11 6 6.6029 -3.0023 -3.0377 12 1 5.9260 -2.4954 -3.7254 13 6 6.5317 -4.5125 -3.2731 14 6 8.0119 -2.5229 -3.2740 15 1 8.5605 -2.0444 -2.4762 16 6 8.6010 -2.6961 -4.5085 17 7 7.9336 -3.2801 -5.4796 18 14 10.3473 -2.1012 -4.8017 19 1 11.2693 -2.7913 -3.8641 20 1 10.7454 -2.4046 -6.1998 21 1 10.4158 -0.6354 -4.5740 22 7 2.3005 -1.0856 -0.0009 23 1 -0.3634 -0.0002 1.0276 24 1 -0.3634 0.8902 -0.5137 25 1 -0.3633 -0.8898 -0.5141 26 1 1.9769 2.1151 0.0009 27 1 5.5725 -1.1046 0.5162 28 1 4.5033 -2.5277 0.5204 29 1 6.5405 -4.2350 -0.2626 30 1 8.0084 -3.4114 -0.8416 31 1 6.9255 -2.5944 0.3107 32 1 7.2082 -5.0197 -2.5853 33 1 5.5126 -4.8592 -3.1021 34 1 6.8232 -4.7342 -4.2997 35 1 8.3482 -3.4023 -6.3479 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259627097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:55 Heat of formation + Delta-G solvation = -14.318152 kcal Electronic energy + Delta-G solvation = -18507.471719 eV Core-core repulsion = 15507.570344 eV Total energy + Delta-G solvation = -2999.901375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.16799 -39.10080 -35.41040 -35.00041 -33.11906 -32.43492 -30.15827 -28.77436 -26.65466 -26.08197 -25.22173 -22.23802 -21.32989 -20.58915 -18.44952 -17.03280 -16.90718 -16.39345 -15.94183 -15.24505 -15.12411 -14.53636 -14.24298 -13.73862 -13.31159 -12.95763 -12.86992 -12.66630 -12.47933 -12.15264 -11.85192 -11.59208 -11.52630 -11.06176 -10.85384 -10.81166 -10.68862 -10.38566 -10.27663 -10.17583 -9.25627 -9.10837 -8.56307 -8.43140 -7.64727 -6.08041 -4.16612 1.58397 2.73830 2.87816 3.25904 3.27960 3.32849 3.35260 3.86858 4.13413 4.39213 4.86011 4.89664 5.09360 5.23116 5.24888 5.32872 5.50920 5.59105 5.68357 5.71675 5.99765 6.04134 6.06620 6.33560 6.42319 6.75465 6.83130 7.05328 7.37745 7.50966 7.69705 7.90051 7.99928 8.17718 8.46044 8.79399 8.97278 9.49683 10.97282 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.035444 B = 0.004848 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.798426 B = 5774.371873 C = 5865.809369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.017 4.017 3 C -0.083 4.083 4 O -0.197 6.197 5 C 0.228 3.772 6 C -0.049 4.049 7 C 0.508 3.492 8 O -0.542 6.542 9 N -0.589 5.589 10 C 0.079 3.921 11 C 0.258 3.742 12 H 0.063 0.937 13 C -0.146 4.146 14 C -0.528 4.528 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 N -0.476 5.476 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.212 0.788 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.012 0.988 34 H 0.093 0.907 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 4.072 13.233 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.137 4.137 3 C -0.154 4.154 4 O -0.083 6.083 5 C 0.020 3.980 6 C -0.090 4.090 7 C 0.293 3.707 8 O -0.420 6.420 9 N -0.321 5.321 10 C -0.065 4.065 11 C 0.159 3.841 12 H 0.081 0.919 13 C -0.205 4.205 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 N -0.206 5.206 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.228 0.772 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.031 0.969 34 H 0.112 0.888 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.070 3.636 12.519 15.332 hybrid contribution 1.217 1.049 -0.178 1.617 sum -6.853 4.685 12.342 14.874 Atomic orbital electron populations 1.20069 0.86733 1.03348 1.02489 1.21774 0.98056 0.88356 1.05519 1.24663 0.80326 1.00813 1.09595 1.84422 1.30524 1.23928 1.69396 1.25338 0.94595 0.79169 0.98876 1.20198 0.91832 0.97940 0.99002 1.19881 0.81408 0.80113 0.89288 1.90705 1.53516 1.52193 1.45573 1.48209 1.27574 1.46629 1.09678 1.21684 0.98731 0.97323 0.88755 1.18974 0.96069 0.92991 0.76112 0.91901 1.22082 0.96683 0.97529 1.04159 1.21270 0.98443 1.39359 0.97598 0.92207 1.24894 0.98129 0.94945 0.95776 1.69870 1.37137 1.42379 1.03106 0.86540 0.84196 0.79287 0.77266 1.20197 1.21162 1.20249 1.70303 1.00396 1.31273 1.18654 0.90972 0.90882 0.90607 0.77163 0.86392 0.85297 0.93479 0.89759 0.92701 0.95070 0.96927 0.88809 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.43 36.00 0.38 -0.33 16 2 C -0.02 -0.25 7.11 -82.81 -0.59 -0.84 16 3 C -0.08 -1.13 12.08 29.35 0.35 -0.77 16 4 O -0.20 -3.26 10.78 5.37 0.06 -3.20 16 5 C 0.23 3.93 6.84 -12.95 -0.09 3.85 16 6 C -0.05 -0.74 4.88 -29.03 -0.14 -0.89 16 7 C 0.51 10.65 7.67 -10.98 -0.08 10.57 16 8 O -0.54 -13.99 15.36 5.56 0.09 -13.91 16 9 N -0.59 -12.39 2.75 -175.25 -0.48 -12.88 16 10 C 0.08 1.24 9.24 59.85 0.55 1.79 16 11 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 12 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 13 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 14 C -0.53 -14.15 7.99 -34.44 -0.28 -14.43 16 15 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 N -0.48 -8.43 11.29 -7.36 -0.08 -8.52 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.21 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.12 1.41 7.40 -51.93 -0.38 1.03 16 28 H 0.13 1.60 8.11 -51.93 -0.42 1.18 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 31 H 0.05 0.65 6.44 -51.93 -0.33 0.32 16 32 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -34.34 299.51 -4.77 -39.11 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.63 Total: -0.39 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 0.16 Total: 3.88 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.06 Total: -45.90 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.14 Total: -17.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.34 -4.77 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.794 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds