Wall clock time and date at job start Mon Mar 30 2020 04:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34334 * 126.16650 * 2 1 4 4 O 1.34746 * 107.11387 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75591 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.61642 * 180.26668 * 5 4 3 7 7 C 1.50703 * 109.46764 * 269.68347 * 6 5 4 8 8 O 1.21277 * 120.00466 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99725 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00090 * 0.02562 * 9 7 6 11 11 C 1.46504 * 119.99887 * 180.02562 * 9 7 6 12 12 H 1.08997 * 109.46993 * 359.97438 * 11 9 7 13 13 C 1.53006 * 109.47012 * 240.00018 * 11 9 7 14 14 C 1.50701 * 109.47191 * 120.00199 * 11 9 7 15 15 H 1.07997 * 119.99928 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99868 * 179.97438 * 14 11 9 17 17 N 1.31516 * 120.00402 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 120.00006 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.46851 * 59.99807 * 18 16 14 20 20 H 1.48493 * 109.46982 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47151 * 300.00537 * 18 16 14 22 22 N 1.30254 * 108.75949 * 359.97438 * 5 4 3 23 23 H 1.08994 * 109.47502 * 269.98801 * 1 2 3 24 24 H 1.09009 * 109.47109 * 29.98755 * 1 2 3 25 25 H 1.09001 * 109.46902 * 149.98202 * 1 2 3 26 26 H 1.07997 * 126.44323 * 0.05719 * 3 2 1 27 27 H 1.08997 * 109.47697 * 29.68419 * 6 5 4 28 28 H 1.09003 * 109.46973 * 149.68825 * 6 5 4 29 29 H 1.09001 * 109.47558 * 89.99996 * 10 9 7 30 30 H 1.08998 * 109.47153 * 209.99894 * 10 9 7 31 31 H 1.09005 * 109.47072 * 329.99752 * 10 9 7 32 32 H 1.08998 * 109.47045 * 300.00459 * 13 11 9 33 33 H 1.09005 * 109.46975 * 59.99884 * 13 11 9 34 34 H 1.08995 * 109.47082 * 179.97438 * 13 11 9 35 35 H 0.96993 * 120.00106 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5734 0.6446 -0.0006 5 6 3.5431 -0.6947 -0.0015 6 6 4.7480 -1.5999 0.0033 7 6 5.1511 -1.9070 -1.4159 8 8 4.5224 -1.4368 -2.3403 9 7 6.2106 -2.7042 -1.6580 10 6 6.9698 -3.2726 -0.5414 11 6 6.6029 -3.0023 -3.0377 12 1 5.9260 -2.4954 -3.7254 13 6 6.5317 -4.5125 -3.2731 14 6 8.0119 -2.5229 -3.2740 15 1 8.5605 -2.0444 -2.4762 16 6 8.6010 -2.6961 -4.5085 17 7 7.9336 -3.2801 -5.4796 18 14 10.3473 -2.1012 -4.8017 19 1 11.2693 -2.7913 -3.8641 20 1 10.7454 -2.4046 -6.1998 21 1 10.4158 -0.6354 -4.5740 22 7 2.3005 -1.0856 -0.0009 23 1 -0.3634 -0.0002 1.0276 24 1 -0.3634 0.8902 -0.5137 25 1 -0.3633 -0.8898 -0.5141 26 1 1.9769 2.1151 0.0009 27 1 5.5725 -1.1046 0.5162 28 1 4.5033 -2.5277 0.5204 29 1 6.5405 -4.2350 -0.2626 30 1 8.0084 -3.4114 -0.8416 31 1 6.9255 -2.5944 0.3107 32 1 7.2082 -5.0197 -2.5853 33 1 5.5126 -4.8592 -3.1021 34 1 6.8232 -4.7342 -4.2997 35 1 8.3482 -3.4023 -6.3479 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259627097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:54 Heat of formation + Delta-G solvation = -40.441524 kcal Electronic energy + Delta-G solvation = -18508.604513 eV Core-core repulsion = 15507.570344 eV Total energy + Delta-G solvation = -3001.034169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.31390 -40.75283 -37.20680 -36.14287 -34.91202 -33.79711 -31.71839 -30.17853 -27.73834 -27.47598 -27.28363 -23.78570 -22.53901 -22.02576 -20.05545 -18.59032 -18.27552 -18.00096 -17.40564 -16.92010 -16.54993 -16.14972 -15.53848 -15.06121 -14.71049 -14.25154 -14.11552 -14.03279 -13.81179 -13.49788 -13.30093 -13.03488 -12.95155 -12.78627 -12.70642 -12.64182 -12.18669 -12.11831 -11.96604 -11.57690 -11.20674 -10.82721 -10.50610 -9.67377 -9.36253 -8.14103 -6.31139 0.44011 1.42580 1.45238 1.52366 1.57721 1.69477 1.80507 2.34393 2.51561 3.00075 3.14138 3.66373 3.87205 3.98624 4.22430 4.30022 4.50738 4.64912 4.76428 4.79042 4.80810 4.86572 4.90288 4.99348 5.04496 5.07244 5.11820 5.42039 5.47977 5.58018 5.66474 6.02766 6.15798 6.74706 6.76223 6.76775 7.27429 7.44034 8.90369 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.035444 B = 0.004848 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.798426 B = 5774.371873 C = 5865.809369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.044 4.044 3 C -0.077 4.077 4 O -0.213 6.213 5 C 0.200 3.800 6 C -0.033 4.033 7 C 0.498 3.502 8 O -0.605 6.605 9 N -0.595 5.595 10 C 0.071 3.929 11 C 0.261 3.739 12 H 0.004 0.996 13 C -0.131 4.131 14 C -0.539 4.539 15 H 0.066 0.934 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.286 1.286 21 H -0.277 1.277 22 N -0.505 5.505 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.256 0.744 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.066 0.934 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.028 4.742 15.627 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.163 4.163 3 C -0.146 4.146 4 O -0.099 6.099 5 C -0.007 4.007 6 C -0.073 4.073 7 C 0.286 3.714 8 O -0.487 6.487 9 N -0.325 5.325 10 C -0.070 4.070 11 C 0.159 3.841 12 H 0.022 0.978 13 C -0.190 4.190 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.792 3.208 19 H -0.184 1.184 20 H -0.211 1.211 21 H -0.203 1.203 22 N -0.236 5.236 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.272 0.728 27 H 0.174 0.826 28 H 0.179 0.821 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.444 4.287 14.972 17.261 hybrid contribution 0.930 0.876 -0.923 1.575 sum -6.515 5.163 14.049 16.324 Atomic orbital electron populations 1.20202 0.84082 1.03999 1.04000 1.22506 0.99930 0.88004 1.05868 1.25599 0.79110 1.02560 1.07377 1.84413 1.32080 1.23858 1.69515 1.25680 0.95102 0.79735 1.00174 1.20220 0.92604 0.99588 0.94874 1.20864 0.80435 0.78822 0.91275 1.90669 1.55446 1.54430 1.48166 1.48196 1.28246 1.46797 1.09256 1.22025 0.97382 0.99512 0.88129 1.18550 0.94332 0.93097 0.78127 0.97824 1.21864 0.97371 0.96784 1.02969 1.21565 0.98906 1.39265 0.97974 0.91543 1.25775 1.02255 0.95046 0.95551 1.70030 1.38867 1.43477 1.03463 0.85480 0.79454 0.78579 0.77326 1.18372 1.21146 1.20286 1.70280 1.01224 1.33010 1.19076 0.88958 0.88336 0.91832 0.72779 0.82601 0.82136 0.91083 0.90921 0.88160 0.93015 0.96373 0.91525 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.43 71.24 0.74 -0.49 16 2 C -0.04 -1.22 7.11 41.26 0.29 -0.93 16 3 C -0.08 -1.94 12.08 66.93 0.81 -1.13 16 4 O -0.21 -6.80 10.78 -3.70 -0.04 -6.84 16 5 C 0.20 6.73 6.84 88.34 0.60 7.33 16 6 C -0.03 -0.94 4.88 29.10 0.14 -0.79 16 7 C 0.50 20.86 7.67 87.66 0.67 21.54 16 8 O -0.60 -32.56 15.36 -3.02 -0.05 -32.61 16 9 N -0.59 -24.71 2.75 -826.77 -2.28 -26.98 16 10 C 0.07 2.03 9.24 127.77 1.18 3.21 16 11 C 0.26 13.72 2.64 44.25 0.12 13.84 16 12 H 0.00 0.24 6.90 -2.39 -0.02 0.22 16 13 C -0.13 -6.40 8.97 71.98 0.65 -5.76 16 14 C -0.54 -29.12 7.99 25.60 0.20 -28.91 16 15 H 0.07 3.41 7.33 -2.91 -0.02 3.39 16 16 C 0.01 0.72 5.30 84.65 0.45 1.17 16 17 N -0.92 -53.58 11.32 21.45 0.24 -53.33 16 18 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 N -0.50 -17.61 11.29 -291.98 -3.30 -20.90 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.26 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.16 3.14 7.40 -2.39 -0.02 3.12 16 28 H 0.16 3.46 8.11 -2.39 -0.02 3.44 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 31 H 0.10 1.94 6.44 -2.38 -0.02 1.92 16 32 H 0.05 2.24 7.67 -2.39 -0.02 2.23 16 33 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -79.72 299.51 3.56 -76.16 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.09 Total: 10.57 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.86 Total: 9.07 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -5.33 Total: -101.22 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.09 Total: -39.45 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -79.72 3.56 -76.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.719 kcal (2) G-P(sol) polarization free energy of solvation -79.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds