Wall clock time and date at job start Mon Mar 30 2020 04:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 C 1.35238 * 126.39286 * 59.71618 * 5 2 1 7 7 N 1.33460 * 107.83644 * 179.87548 * 6 5 2 8 8 C 1.31288 * 108.70724 * 0.38739 * 7 6 5 9 9 C 1.47454 * 125.70275 * 179.75473 * 8 7 6 10 10 O 1.21599 * 119.99574 * 180.02562 * 9 8 7 11 11 N 1.34770 * 120.00254 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99813 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47232 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99783 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00514 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99746 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46869 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47158 * 119.99799 * 17 15 13 20 20 H 1.48498 * 109.47056 * 239.99995 * 17 15 13 21 21 O 1.34314 * 126.39356 * 240.02656 * 5 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 31 31 H 1.08004 * 126.07998 * 359.97438 * 6 5 2 32 32 H 0.96994 * 120.00150 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.47056 * 299.99975 * 12 11 9 34 34 H 1.08998 * 109.47469 * 59.99883 * 12 11 9 35 35 H 0.97002 * 120.00355 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 1.7822 -0.3660 -2.5141 7 7 2.4081 -1.2428 -3.3020 8 6 3.0280 -2.1198 -2.5468 9 6 3.8315 -3.2572 -3.0314 10 8 4.3623 -4.0089 -2.2365 11 7 3.9777 -3.4637 -4.3551 12 6 4.7756 -4.5941 -4.8365 13 6 4.7809 -4.5998 -6.3434 14 1 4.2433 -3.8378 -6.8882 15 6 5.4712 -5.5783 -7.0268 16 7 6.1254 -6.5065 -6.3635 17 14 5.4771 -5.5857 -8.8948 18 1 4.6714 -4.4438 -9.3968 19 1 6.8729 -5.4610 -9.3858 20 1 4.8912 -6.8585 -9.3866 21 8 2.8072 -1.8071 -1.2569 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 -1.7489 1.2492 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -0.2075 2.1393 31 1 1.1838 0.4707 -2.8431 32 1 3.5540 -2.8643 -4.9892 33 1 5.7978 -4.4993 -4.4703 34 1 4.3436 -5.5257 -4.4708 35 1 6.6114 -7.1947 -6.8442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259648255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:12 Heat of formation + Delta-G solvation = -54.423016 kcal Electronic energy + Delta-G solvation = -18050.687584 eV Core-core repulsion = 15049.047132 eV Total energy + Delta-G solvation = -3001.640452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.66491 -40.59765 -38.00864 -36.59058 -35.96102 -34.43078 -31.22345 -29.26345 -28.33038 -28.19020 -25.99814 -24.17223 -23.83115 -21.86582 -20.80385 -19.85639 -18.19845 -18.10320 -17.47610 -17.05141 -16.40377 -16.17183 -15.78043 -15.10701 -14.99326 -14.81228 -14.47397 -14.10205 -14.08321 -13.20465 -13.17021 -12.96929 -12.76387 -12.73736 -12.67273 -12.63301 -12.26094 -12.05637 -12.01165 -11.67941 -11.57153 -11.47569 -10.86854 -10.20649 -9.82853 -8.31375 -6.48114 -0.29823 0.97020 1.14305 1.45201 1.45805 1.60121 1.98789 2.31165 2.43742 3.04083 3.06246 3.40705 3.77680 3.84679 3.89024 4.05199 4.42751 4.56790 4.71346 4.75754 4.83543 4.95027 4.95134 4.98214 5.01335 5.07196 5.14427 5.21053 5.25026 5.34468 5.36582 5.53648 5.76165 6.23988 6.55552 6.65522 6.98764 7.25110 8.81021 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.050539 B = 0.003943 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.890803 B = 7099.609039 C = 7457.142202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.016 3.984 3 C -0.138 4.138 4 C -0.150 4.150 5 C -0.006 4.006 6 C -0.041 4.041 7 N -0.435 5.435 8 C 0.111 3.889 9 C 0.597 3.403 10 O -0.574 6.574 11 N -0.669 5.669 12 C 0.265 3.735 13 C -0.559 4.559 14 H 0.083 0.917 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.987 3.013 18 H -0.255 1.255 19 H -0.277 1.277 20 H -0.277 1.277 21 O -0.179 6.179 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.230 0.770 32 H 0.416 0.584 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.918 18.264 11.187 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.015 3.985 3 C -0.195 4.195 4 C -0.207 4.207 5 C -0.062 4.062 6 C -0.184 4.184 7 N -0.169 5.169 8 C -0.093 4.093 9 C 0.380 3.620 10 O -0.453 6.453 11 N -0.319 5.319 12 C 0.144 3.856 13 C -0.597 4.597 14 H 0.101 0.899 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.810 3.190 18 H -0.179 1.179 19 H -0.202 1.202 20 H -0.203 1.203 21 O -0.062 6.062 22 H 0.097 0.903 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.247 0.753 32 H 0.253 0.747 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.329 17.433 11.099 24.065 hybrid contribution 0.342 -0.483 -0.287 0.658 sum -11.987 16.950 10.812 23.407 Atomic orbital electron populations 1.21975 0.89875 1.02744 1.04909 1.19566 0.97445 0.94843 0.86656 1.21971 1.01095 0.91533 1.04902 1.21944 1.01018 1.00350 0.97398 1.25027 0.93900 0.86668 1.00559 1.23793 1.04358 1.02330 0.87967 1.70374 1.08279 1.03161 1.35100 1.24965 1.05530 1.00589 0.78182 1.16418 0.80028 0.81796 0.83722 1.90801 1.50503 1.48030 1.56000 1.45931 1.50513 1.31029 1.04419 1.18864 0.89173 0.82799 0.94792 1.21574 1.33855 1.13988 0.90245 0.89868 1.26023 0.93888 0.94159 1.05109 1.70124 1.32582 1.15440 1.38427 0.85072 0.78231 0.78645 0.77049 1.17870 1.20241 1.20252 1.84454 1.53249 1.38747 1.29721 0.90317 0.88394 0.93303 0.88401 0.93312 0.90322 0.93501 0.93504 0.88429 0.75315 0.74745 0.97900 0.97897 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.35 71.98 0.60 -0.81 16 2 C 0.02 0.23 0.94 -52.93 -0.05 0.18 16 3 C -0.14 -1.42 8.36 71.98 0.60 -0.82 16 4 C -0.15 -2.47 8.06 71.98 0.58 -1.89 16 5 C -0.01 -0.14 5.70 24.99 0.14 0.00 16 6 C -0.04 -0.97 11.25 83.75 0.94 -0.03 16 7 N -0.43 -14.33 10.91 -305.19 -3.33 -17.66 16 8 C 0.11 4.29 8.09 87.20 0.71 4.99 16 9 C 0.60 27.91 7.82 86.67 0.68 28.58 16 10 O -0.57 -30.99 17.11 1.19 0.02 -30.97 16 11 N -0.67 -31.36 5.55 -470.09 -2.61 -33.97 16 12 C 0.26 14.84 5.43 85.63 0.46 15.31 16 13 C -0.56 -30.91 9.28 25.60 0.24 -30.67 16 14 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 17 Si 0.99 42.57 29.54 68.60 2.03 44.60 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 21 O -0.18 -6.24 10.24 0.24 0.00 -6.24 16 22 H 0.08 0.61 8.01 -2.39 -0.02 0.59 16 23 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 0.62 8.02 -2.39 -0.02 0.60 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.23 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.42 17.35 7.99 -92.71 -0.74 16.61 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -72.49 307.94 2.11 -70.38 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.35 Total: 13.40 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 5.37 Total: 15.76 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -5.65 Total: -106.93 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: 0.02 Total: -37.21 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.49 2.11 -70.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.956 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds