Wall clock time and date at job start Mon Mar 30 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35456 * 116.99897 * 2 1 4 4 N 1.32315 * 119.16752 * 0.02562 * 3 2 1 5 5 C 1.32747 * 120.65753 * 179.97438 * 4 3 2 6 6 O 1.35517 * 120.47601 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99612 * 359.97438 * 6 5 4 8 8 C 1.39421 * 119.05112 * 359.74525 * 5 4 3 9 9 C 1.50703 * 120.77198 * 180.25197 * 8 5 4 10 10 C 1.38187 * 118.47058 * 0.49158 * 8 5 4 11 11 C 1.50696 * 120.38192 * 179.78509 * 10 8 5 12 12 H 1.09000 * 109.46818 * 359.71925 * 11 10 8 13 13 C 1.53007 * 109.46922 * 239.72441 * 11 10 8 14 14 C 1.50692 * 109.47235 * 119.72233 * 11 10 8 15 15 H 1.08004 * 120.00477 * 29.10187 * 14 11 10 16 16 C 1.37882 * 120.00155 * 209.10068 * 14 11 10 17 17 N 1.31516 * 119.99742 * 352.57711 * 16 14 11 18 18 Si 1.86789 * 120.00255 * 172.57350 * 16 14 11 19 19 H 1.48501 * 109.47146 * 270.00203 * 18 16 14 20 20 H 1.48506 * 109.47268 * 30.00119 * 18 16 14 21 21 H 1.48500 * 109.47097 * 150.00243 * 18 16 14 22 22 N 1.32288 * 119.16046 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.47301 * 300.00632 * 1 2 3 24 24 H 1.09010 * 109.46817 * 59.99428 * 1 2 3 25 25 H 1.08999 * 109.47569 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47152 * 180.02562 * 7 6 5 27 27 H 1.08998 * 109.47471 * 300.00209 * 7 6 5 28 28 H 1.08997 * 109.47306 * 60.00297 * 7 6 5 29 29 H 1.09005 * 109.47053 * 270.25244 * 9 8 5 30 30 H 1.09003 * 109.46347 * 30.24200 * 9 8 5 31 31 H 1.08997 * 109.47398 * 150.24426 * 9 8 5 32 32 H 1.09001 * 109.46791 * 296.39111 * 13 11 10 33 33 H 1.08999 * 109.47483 * 56.39363 * 13 11 10 34 34 H 1.09000 * 109.46949 * 176.39405 * 13 11 10 35 35 H 0.97005 * 119.99729 * 354.50537 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3073 2.3060 0.0005 5 6 1.8789 3.5041 0.0010 6 8 1.1209 4.6274 0.0021 7 6 -0.2974 4.4528 0.0020 8 6 3.2705 3.5902 0.0065 9 6 3.9600 4.9302 0.0129 10 6 4.0031 2.4185 0.0007 11 6 5.5094 2.4615 0.0013 12 1 5.8433 3.4991 0.0017 13 6 6.0402 1.7554 -1.2480 14 6 6.0313 1.7654 1.2317 15 1 5.4632 0.9640 1.6807 16 6 7.2340 2.1515 1.7844 17 7 7.9951 3.0232 1.1595 18 14 7.7824 1.4365 3.4206 19 1 7.2831 2.2921 4.5269 20 1 7.2343 0.0644 3.5699 21 1 9.2658 1.3846 3.4658 22 7 3.3659 1.2568 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.7837 5.4284 0.0025 27 1 -0.5954 3.8991 -0.8884 28 1 -0.5952 3.8976 0.8915 29 1 4.1261 5.2584 -1.0132 30 1 3.3348 5.6579 0.5304 31 1 4.9176 4.8436 0.5263 32 1 5.7605 0.7023 -1.2166 33 1 5.6121 2.2187 -2.1369 34 1 7.1263 1.8420 -1.2804 35 1 7.7499 3.3342 0.2740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259649999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:03 Heat of formation + Delta-G solvation = -55.929225 kcal Electronic energy + Delta-G solvation = -19026.667878 eV Core-core repulsion = 16024.962111 eV Total energy + Delta-G solvation = -3001.705766 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.52505 -40.10492 -39.23268 -36.74248 -34.34358 -33.99895 -31.87235 -28.98736 -28.70797 -27.16235 -26.86507 -25.19174 -23.68461 -22.30961 -20.02034 -19.71122 -18.56106 -17.74863 -17.56582 -16.70548 -16.15037 -15.88444 -15.63607 -15.36282 -15.12758 -15.09611 -14.49262 -13.83084 -13.57076 -13.30620 -13.21172 -13.05591 -12.86442 -12.73738 -12.64253 -12.51795 -12.10202 -11.94803 -11.86209 -11.64751 -11.14776 -10.64580 -10.44788 -10.21370 -9.50955 -8.58854 -6.29182 -0.02154 0.12384 1.52417 1.54965 1.62341 1.81388 1.85166 2.56038 2.69704 2.92025 3.21073 3.66228 3.87810 4.02546 4.09166 4.33455 4.35350 4.36676 4.41489 4.57981 4.62206 4.67082 4.72250 4.78530 4.85673 4.92196 5.03556 5.23379 5.33875 5.55662 5.65144 5.78168 6.05956 6.19864 6.26533 6.65280 7.13443 7.43889 8.80489 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.007164 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.330956 B = 3907.344396 C = 4449.091059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.511 3.489 4 N -0.621 5.621 5 C 0.390 3.610 6 O -0.298 6.298 7 C 0.031 3.969 8 C -0.263 4.263 9 C -0.081 4.081 10 C 0.260 3.740 11 C 0.061 3.939 12 H 0.060 0.940 13 C -0.117 4.117 14 C -0.590 4.590 15 H 0.036 0.964 16 C -0.017 4.017 17 N -0.927 5.927 18 Si 1.108 2.892 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.278 1.278 22 N -0.563 5.563 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.541 2.225 -2.929 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.208 6.208 3 C 0.209 3.791 4 N -0.368 5.368 5 C 0.204 3.796 6 O -0.202 6.202 7 C -0.063 4.063 8 C -0.269 4.269 9 C -0.138 4.138 10 C 0.119 3.881 11 C 0.041 3.959 12 H 0.078 0.922 13 C -0.175 4.175 14 C -0.628 4.628 15 H 0.055 0.945 16 C -0.217 4.217 17 N -0.563 5.563 18 Si 0.931 3.069 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.204 1.204 22 N -0.293 5.293 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.754 1.449 -1.791 15.921 hybrid contribution -1.215 0.354 -1.221 1.759 sum -16.969 1.803 -3.012 17.328 Atomic orbital electron populations 1.23259 0.73819 1.05459 1.02828 1.86103 1.25417 1.22050 1.87230 1.20524 0.85880 0.84285 0.88461 1.67509 1.41311 0.98317 1.29683 1.19549 0.88267 0.84590 0.87191 1.86260 1.21875 1.25437 1.86618 1.23238 0.75197 1.05259 1.02592 1.20698 0.91479 0.99536 1.15153 1.20426 0.99659 0.90801 1.02949 1.21864 0.98081 0.85076 0.83093 1.18189 0.83717 0.98373 0.95593 0.92237 1.21685 0.99714 0.99921 0.96169 1.21989 1.07624 1.20564 1.12651 0.94531 1.26985 0.93229 0.95107 1.06356 1.70869 1.39376 1.30861 1.15229 0.83028 0.76134 0.75689 0.72030 1.20026 1.20732 1.20380 1.67455 1.07226 1.31306 1.23287 0.91964 0.91606 0.84871 0.84848 0.91963 0.92298 0.90179 0.89936 0.92245 0.94200 0.94233 0.93882 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.36 113.37 1.17 2.10 16 2 O -0.31 -10.91 10.55 -87.54 -0.92 -11.84 16 3 C 0.51 20.98 8.49 180.58 1.53 22.52 16 4 N -0.62 -22.33 8.17 -426.36 -3.48 -25.81 16 5 C 0.39 14.07 7.50 84.84 0.64 14.71 16 6 O -0.30 -8.60 9.67 -88.19 -0.85 -9.45 16 7 C 0.03 0.60 10.41 113.37 1.18 1.78 16 8 C -0.26 -10.66 5.93 -19.59 -0.12 -10.78 16 9 C -0.08 -2.82 9.25 71.24 0.66 -2.16 16 10 C 0.26 12.25 5.46 42.45 0.23 12.48 16 11 C 0.06 3.07 2.02 -12.29 -0.02 3.04 16 12 H 0.06 3.04 4.43 -2.39 -0.01 3.03 16 13 C -0.12 -5.52 8.99 71.98 0.65 -4.87 16 14 C -0.59 -33.64 8.21 25.60 0.21 -33.43 16 15 H 0.04 2.21 7.75 -2.91 -0.02 2.18 16 16 C -0.02 -0.96 5.44 84.66 0.46 -0.50 16 17 N -0.93 -54.03 13.55 21.45 0.29 -53.73 16 18 Si 1.11 50.93 29.91 68.60 2.05 52.98 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 N -0.56 -26.92 10.09 -301.73 -3.04 -29.96 16 23 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 24 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 25 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 28 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 29 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.08 2.51 7.63 -2.39 -0.02 2.49 16 31 H 0.06 2.35 6.20 -2.39 -0.01 2.34 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 2.07 7.64 -2.39 -0.02 2.05 16 35 H 0.26 15.25 6.36 -92.70 -0.59 14.66 16 Total: -1.00 -68.43 298.45 1.90 -66.52 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.27 Total: 6.41 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 6.59 Total: 4.87 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -6.23 Total: -109.51 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -1.78 Total: -21.29 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -68.43 1.90 -66.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.594 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds