Wall clock time and date at job start Mon Mar 30 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35457 * 117.00081 * 2 1 4 4 N 1.32309 * 119.16209 * 0.26403 * 3 2 1 5 5 C 1.32750 * 120.65665 * 180.28875 * 4 3 2 6 6 O 1.35515 * 120.47696 * 179.71899 * 5 4 3 7 7 C 1.42901 * 116.99801 * 359.72903 * 6 5 4 8 8 C 1.39427 * 119.04865 * 359.45199 * 5 4 3 9 9 C 1.50704 * 120.76666 * 180.24757 * 8 5 4 10 10 C 1.38185 * 118.46852 * 0.27181 * 8 5 4 11 11 C 1.50701 * 120.37887 * 180.02562 * 10 8 5 12 12 H 1.09002 * 109.46430 * 359.97438 * 11 10 8 13 13 C 1.52997 * 109.47042 * 119.99843 * 11 10 8 14 14 C 1.50703 * 109.47016 * 240.00338 * 11 10 8 15 15 H 1.07997 * 119.99994 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99744 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00084 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99928 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47180 * 59.99093 * 18 16 14 20 20 H 1.48498 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46513 * 299.99300 * 18 16 14 22 22 N 1.32287 * 119.16447 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.47496 * 300.00456 * 1 2 3 24 24 H 1.09003 * 109.47056 * 60.01139 * 1 2 3 25 25 H 1.09002 * 109.47271 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99667 * 7 6 5 27 27 H 1.08999 * 109.47144 * 59.99691 * 7 6 5 28 28 H 1.09006 * 109.46808 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46430 * 90.00347 * 9 8 5 30 30 H 1.09000 * 109.47269 * 210.00082 * 9 8 5 31 31 H 1.08997 * 109.47302 * 330.00533 * 9 8 5 32 32 H 1.08991 * 109.47256 * 299.99718 * 13 11 10 33 33 H 1.08996 * 109.46963 * 60.00483 * 13 11 10 34 34 H 1.09007 * 109.46692 * 179.97438 * 13 11 10 35 35 H 0.97004 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3072 2.3059 0.0053 5 6 1.8788 3.5040 -0.0003 6 8 1.1207 4.6273 -0.0005 7 6 -0.2976 4.4526 -0.0006 8 6 3.2704 3.5902 -0.0002 9 6 3.9598 4.9303 -0.0009 10 6 4.0030 2.4185 -0.0001 11 6 5.5093 2.4615 0.0006 12 1 5.8431 3.4991 0.0004 13 6 6.0391 1.7549 1.2500 14 6 6.0322 1.7659 -1.2298 15 1 5.3427 1.3354 -1.9409 16 6 7.3909 1.6782 -1.4472 17 7 8.2305 2.2020 -0.5810 18 14 8.0392 0.8154 -2.9719 19 1 7.5252 1.5009 -4.1848 20 1 9.5235 0.8579 -2.9713 21 1 7.5839 -0.5981 -2.9719 22 7 3.3659 1.2569 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.5954 3.8981 -0.8904 27 1 -0.5955 3.8983 0.8895 28 1 -0.7838 5.4282 -0.0003 29 1 4.1260 5.2538 1.0267 30 1 4.9175 4.8461 -0.5146 31 1 3.3347 5.6603 -0.5150 32 1 5.6610 2.2581 2.1398 33 1 5.7053 0.7173 1.2496 34 1 7.1288 1.7856 1.2501 35 1 9.1865 2.1407 -0.7341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259650001.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:04 Heat of formation + Delta-G solvation = -26.059107 kcal Electronic energy + Delta-G solvation = -18972.122526 eV Core-core repulsion = 15971.712025 eV Total energy + Delta-G solvation = -3000.410501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95877 -38.74525 -37.71742 -34.70572 -32.56406 -32.36252 -29.96153 -27.69956 -27.57236 -25.71704 -25.13791 -23.54974 -22.09448 -20.40178 -18.44543 -17.86916 -16.63168 -16.33115 -15.69423 -15.46330 -14.90063 -14.57731 -13.96168 -13.88021 -13.61269 -13.08879 -12.59817 -12.42817 -12.16219 -11.78436 -11.71260 -11.56571 -11.42533 -10.99509 -10.87423 -10.55578 -10.51226 -10.32886 -10.04897 -9.92287 -9.50985 -8.88601 -8.54531 -8.35802 -7.95321 -6.01493 -4.06422 1.61170 1.75408 2.95563 3.16630 3.35814 3.39092 3.44195 4.30903 4.39057 4.48608 5.16779 5.22240 5.26651 5.26759 5.31546 5.33470 5.46811 5.54184 5.62672 5.68245 5.73777 6.18938 6.46356 6.55140 6.75270 6.85440 6.98469 7.11237 7.20008 7.34664 7.62486 7.68881 7.88726 8.04839 8.31233 8.78469 8.93074 9.56573 11.04719 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.006972 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.647183 B = 4015.345816 C = 4624.103942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.290 6.290 3 C 0.516 3.484 4 N -0.640 5.640 5 C 0.380 3.620 6 O -0.300 6.300 7 C 0.040 3.960 8 C -0.251 4.251 9 C -0.088 4.088 10 C 0.279 3.721 11 C 0.081 3.919 12 H 0.060 0.940 13 C -0.129 4.129 14 C -0.498 4.498 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.276 1.276 22 N -0.520 5.520 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.006 0.994 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 3.190 2.112 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.192 6.192 3 C 0.213 3.787 4 N -0.386 5.386 5 C 0.196 3.804 6 O -0.205 6.205 7 C -0.055 4.055 8 C -0.256 4.256 9 C -0.146 4.146 10 C 0.136 3.864 11 C 0.063 3.937 12 H 0.078 0.922 13 C -0.187 4.187 14 C -0.537 4.537 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.201 1.201 22 N -0.248 5.248 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.025 0.975 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.251 2.341 2.149 14.601 hybrid contribution -0.027 0.156 -0.835 0.850 sum -14.278 2.497 1.314 14.554 Atomic orbital electron populations 1.22836 0.76951 1.02808 1.02161 1.86104 1.22337 1.23073 1.87653 1.20432 0.86366 0.83033 0.88900 1.67377 1.42325 0.98780 1.30165 1.19507 0.88342 0.83779 0.88794 1.86239 1.19603 1.27144 1.87478 1.22821 0.77878 1.02581 1.02228 1.20580 0.90267 0.99638 1.15128 1.20469 1.00780 0.91362 1.02006 1.22385 0.99214 0.83798 0.80984 1.18148 0.80114 0.99058 0.96429 0.92204 1.21724 1.04337 0.98780 0.93890 1.20861 0.91577 1.36224 1.05044 0.92372 1.24882 0.96673 0.95438 0.96739 1.69854 1.02618 1.45232 1.35285 0.86566 0.77476 0.80366 0.83105 1.20335 1.21230 1.20112 1.67671 1.05139 1.30669 1.21334 0.92517 0.92497 0.88432 0.92516 0.92530 0.88748 0.91903 0.89712 0.92038 0.97453 0.94054 0.89053 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.36 101.05 1.05 1.66 16 2 O -0.29 -5.34 10.55 -18.06 -0.19 -5.53 16 3 C 0.52 10.72 8.49 -91.29 -0.77 9.95 16 4 N -0.64 -11.98 8.17 -14.79 -0.12 -12.10 16 5 C 0.38 7.12 7.50 -16.71 -0.13 6.99 16 6 O -0.30 -4.71 9.66 -18.24 -0.18 -4.89 16 7 C 0.04 0.46 10.41 101.05 1.05 1.51 16 8 C -0.25 -5.08 5.93 -104.20 -0.62 -5.70 16 9 C -0.09 -1.54 9.25 36.01 0.33 -1.20 16 10 C 0.28 6.44 5.41 -82.33 -0.45 6.00 16 11 C 0.08 2.04 2.39 -92.92 -0.22 1.81 16 12 H 0.06 1.50 5.59 -51.93 -0.29 1.21 16 13 C -0.13 -3.17 8.88 37.16 0.33 -2.84 16 14 C -0.50 -13.75 8.45 -34.44 -0.29 -14.04 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.70 11.32 55.43 0.63 -24.08 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 N -0.52 -12.31 10.08 -11.02 -0.11 -12.42 16 23 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 24 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.57 6.20 -51.93 -0.32 1.25 16 31 H 0.06 0.95 7.63 -51.93 -0.40 0.56 16 32 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.04 1.03 8.06 -51.93 -0.42 0.61 16 34 H 0.09 2.39 6.07 -51.92 -0.32 2.07 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -30.43 297.59 -4.97 -35.40 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.66 Total: -3.09 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 0.19 Total: 5.79 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.40 Total: -48.59 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.37 Total: -10.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.43 -4.97 -35.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650001.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.346 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds