Wall clock time and date at job start Mon Mar 30 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35457 * 117.00081 * 2 1 4 4 N 1.32309 * 119.16209 * 0.26403 * 3 2 1 5 5 C 1.32750 * 120.65665 * 180.28875 * 4 3 2 6 6 O 1.35515 * 120.47696 * 179.71899 * 5 4 3 7 7 C 1.42901 * 116.99801 * 359.72903 * 6 5 4 8 8 C 1.39427 * 119.04865 * 359.45199 * 5 4 3 9 9 C 1.50704 * 120.76666 * 180.24757 * 8 5 4 10 10 C 1.38185 * 118.46852 * 0.27181 * 8 5 4 11 11 C 1.50701 * 120.37887 * 180.02562 * 10 8 5 12 12 H 1.09002 * 109.46430 * 359.97438 * 11 10 8 13 13 C 1.52997 * 109.47042 * 119.99843 * 11 10 8 14 14 C 1.50703 * 109.47016 * 240.00338 * 11 10 8 15 15 H 1.07997 * 119.99994 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99744 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00084 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99928 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47180 * 59.99093 * 18 16 14 20 20 H 1.48498 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46513 * 299.99300 * 18 16 14 22 22 N 1.32287 * 119.16447 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.47496 * 300.00456 * 1 2 3 24 24 H 1.09003 * 109.47056 * 60.01139 * 1 2 3 25 25 H 1.09002 * 109.47271 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99667 * 7 6 5 27 27 H 1.08999 * 109.47144 * 59.99691 * 7 6 5 28 28 H 1.09006 * 109.46808 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46430 * 90.00347 * 9 8 5 30 30 H 1.09000 * 109.47269 * 210.00082 * 9 8 5 31 31 H 1.08997 * 109.47302 * 330.00533 * 9 8 5 32 32 H 1.08991 * 109.47256 * 299.99718 * 13 11 10 33 33 H 1.08996 * 109.46963 * 60.00483 * 13 11 10 34 34 H 1.09007 * 109.46692 * 179.97438 * 13 11 10 35 35 H 0.97004 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3072 2.3059 0.0053 5 6 1.8788 3.5040 -0.0003 6 8 1.1207 4.6273 -0.0005 7 6 -0.2976 4.4526 -0.0006 8 6 3.2704 3.5902 -0.0002 9 6 3.9598 4.9303 -0.0009 10 6 4.0030 2.4185 -0.0001 11 6 5.5093 2.4615 0.0006 12 1 5.8431 3.4991 0.0004 13 6 6.0391 1.7549 1.2500 14 6 6.0322 1.7659 -1.2298 15 1 5.3427 1.3354 -1.9409 16 6 7.3909 1.6782 -1.4472 17 7 8.2305 2.2020 -0.5810 18 14 8.0392 0.8154 -2.9719 19 1 7.5252 1.5009 -4.1848 20 1 9.5235 0.8579 -2.9713 21 1 7.5839 -0.5981 -2.9719 22 7 3.3659 1.2569 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.5954 3.8981 -0.8904 27 1 -0.5955 3.8983 0.8895 28 1 -0.7838 5.4282 -0.0003 29 1 4.1260 5.2538 1.0267 30 1 4.9175 4.8461 -0.5146 31 1 3.3347 5.6603 -0.5150 32 1 5.6610 2.2581 2.1398 33 1 5.7053 0.7173 1.2496 34 1 7.1288 1.7856 1.2501 35 1 9.1865 2.1407 -0.7341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259650001.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:04 Heat of formation + Delta-G solvation = -49.095148 kcal Electronic energy + Delta-G solvation = -18973.121444 eV Core-core repulsion = 15971.712025 eV Total energy + Delta-G solvation = -3001.409419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.45977 -40.05431 -39.14688 -36.48084 -34.30256 -33.91588 -31.83375 -28.92972 -28.65166 -27.23332 -27.02339 -25.16874 -23.61360 -22.08063 -19.89171 -19.41380 -18.33685 -17.69040 -17.39396 -16.67744 -16.66067 -15.96100 -15.49614 -15.12889 -15.06073 -14.82322 -14.47365 -13.74633 -13.53144 -13.23007 -13.06446 -12.87302 -12.81869 -12.79954 -12.61486 -12.36451 -12.13748 -11.96177 -11.86770 -11.68586 -11.18799 -10.77377 -10.44431 -10.15224 -9.45100 -8.09612 -6.20818 0.04400 0.19003 1.43592 1.45618 1.53158 1.58689 1.90501 2.44887 2.76826 2.98671 3.19010 3.73104 3.97042 4.11095 4.21410 4.36463 4.38454 4.39870 4.45197 4.65980 4.70921 4.81938 4.87515 4.96637 5.03477 5.12119 5.18629 5.45770 5.55025 5.67129 5.76414 5.93239 5.99998 6.26092 6.30034 6.80322 7.20782 7.44364 8.95413 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.006972 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.647183 B = 4015.345816 C = 4624.103942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.509 3.491 4 N -0.622 5.622 5 C 0.387 3.613 6 O -0.298 6.298 7 C 0.032 3.968 8 C -0.260 4.260 9 C -0.082 4.082 10 C 0.256 3.744 11 C 0.081 3.919 12 H 0.056 0.944 13 C -0.117 4.117 14 C -0.517 4.517 15 H 0.039 0.961 16 C 0.024 3.976 17 N -0.909 5.909 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.276 1.276 21 H -0.280 1.280 22 N -0.561 5.561 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.132 0.868 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.133 0.867 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.911 3.918 1.898 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.209 6.209 3 C 0.206 3.794 4 N -0.369 5.369 5 C 0.202 3.798 6 O -0.202 6.202 7 C -0.063 4.063 8 C -0.266 4.266 9 C -0.140 4.140 10 C 0.114 3.886 11 C 0.062 3.938 12 H 0.074 0.926 13 C -0.175 4.175 14 C -0.555 4.555 15 H 0.057 0.943 16 C -0.175 4.175 17 N -0.548 5.548 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.205 1.205 22 N -0.291 5.291 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.150 0.850 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.151 0.849 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.105 3.083 1.938 16.511 hybrid contribution 0.345 -0.052 -0.745 0.822 sum -15.760 3.031 1.193 16.094 Atomic orbital electron populations 1.23239 0.73922 1.05372 1.02791 1.86101 1.25336 1.22177 1.87292 1.20530 0.85930 0.84233 0.88662 1.67495 1.41398 0.98376 1.29657 1.19582 0.88362 0.84530 0.87372 1.86256 1.21771 1.25458 1.86692 1.23222 0.75322 1.05190 1.02522 1.20750 0.91331 0.99703 1.14785 1.20458 0.99989 0.90502 1.03008 1.22022 0.98429 0.84976 0.83144 1.17985 0.82070 0.98299 0.95422 0.92629 1.21541 1.02934 0.98076 0.94937 1.21012 0.91777 1.36761 1.05953 0.94282 1.25527 0.96783 0.95993 0.99231 1.69938 1.02816 1.45704 1.36352 0.85713 0.77365 0.78978 0.80194 1.19835 1.20070 1.20527 1.67485 1.07099 1.31514 1.23000 0.91665 0.91958 0.84992 0.92335 0.92087 0.84890 0.90383 0.91440 0.89961 0.95549 0.95604 0.90926 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 10.36 113.37 1.17 2.12 16 2 O -0.31 -11.09 10.55 -87.55 -0.92 -12.02 16 3 C 0.51 21.03 8.49 180.58 1.53 22.57 16 4 N -0.62 -22.39 8.17 -426.36 -3.48 -25.87 16 5 C 0.39 13.87 7.50 84.84 0.64 14.51 16 6 O -0.30 -8.49 9.66 -88.17 -0.85 -9.34 16 7 C 0.03 0.61 10.41 113.37 1.18 1.79 16 8 C -0.26 -10.40 5.93 -19.59 -0.12 -10.52 16 9 C -0.08 -2.76 9.25 71.24 0.66 -2.11 16 10 C 0.26 12.02 5.41 42.45 0.23 12.25 16 11 C 0.08 4.16 2.39 -12.29 -0.03 4.13 16 12 H 0.06 2.86 5.59 -2.39 -0.01 2.85 16 13 C -0.12 -5.88 8.88 71.98 0.64 -5.24 16 14 C -0.52 -29.28 8.45 25.60 0.22 -29.07 16 15 H 0.04 2.31 7.74 -2.91 -0.02 2.28 16 16 C 0.02 1.34 5.30 84.66 0.45 1.79 16 17 N -0.91 -51.02 11.32 21.45 0.24 -50.78 16 18 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 N -0.56 -27.06 10.08 -301.73 -3.04 -30.10 16 23 H 0.06 1.38 8.09 -2.39 -0.02 1.36 16 24 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 25 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 27 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 28 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.07 2.50 6.20 -2.39 -0.01 2.49 16 31 H 0.08 2.38 7.63 -2.39 -0.02 2.36 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.02 1.32 8.06 -2.39 -0.02 1.30 16 34 H 0.07 3.90 6.07 -2.38 -0.01 3.88 16 35 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -66.27 297.59 1.63 -64.64 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.09 Total: 4.86 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.57 Total: 12.22 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -6.28 Total: -106.75 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.78 Total: -21.36 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.27 1.63 -64.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650001.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.543 kcal (2) G-P(sol) polarization free energy of solvation -66.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds