Wall clock time and date at job start Mon Mar 30 2020 04:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47034 * 90.00599 * 5 4 3 7 7 O 1.21286 * 120.00169 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00355 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00180 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46980 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.46942 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00407 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99775 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99938 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99956 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47322 * 90.00068 * 15 13 11 17 17 H 1.48508 * 109.47161 * 209.99844 * 15 13 11 18 18 H 1.48500 * 109.47367 * 329.99742 * 15 13 11 19 19 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 20 20 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 21 21 C 1.50706 * 126.43925 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 23 23 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 24 24 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 25 25 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 26 26 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 27 27 H 0.97000 * 119.99628 * 359.97438 * 8 6 5 28 28 H 1.08995 * 109.47267 * 299.99215 * 9 8 6 29 29 H 1.08999 * 109.46934 * 60.00017 * 9 8 6 30 30 H 1.09000 * 109.46773 * 300.00414 * 10 9 8 31 31 H 1.09004 * 109.46811 * 59.99977 * 10 9 8 32 32 H 0.97007 * 120.00190 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.46953 * 90.00182 * 21 20 2 34 34 H 1.09000 * 109.47318 * 209.99779 * 21 20 2 35 35 H 1.09000 * 109.47161 * 330.00410 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 6 5.1493 1.9027 1.4209 7 8 4.5187 1.4302 2.3430 8 7 6.2083 2.6992 1.6670 9 6 6.5981 2.9938 3.0481 10 6 7.8214 3.9128 3.0477 11 6 8.2220 4.2163 4.4684 12 1 7.6606 3.7956 5.2894 13 6 9.3053 5.0313 4.7201 14 7 9.9893 5.5433 3.7203 15 14 9.8023 5.4070 6.4811 16 1 10.7755 4.3876 6.9490 17 1 10.4271 6.7528 6.5427 18 1 8.5995 5.3794 7.3516 19 8 3.5735 -0.6445 0.0067 20 6 2.2998 -1.0844 -0.0005 21 6 1.8494 -2.5226 -0.0006 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 5.5731 1.1064 -0.5131 26 1 4.5040 2.5295 -0.5143 27 1 6.7124 3.0774 0.9295 28 1 5.7727 3.4873 3.5611 29 1 6.8423 2.0645 3.5627 30 1 8.6466 3.4190 2.5347 31 1 7.5775 4.8421 2.5329 32 1 10.7517 6.1164 3.8973 33 1 1.7405 -2.8691 -1.0283 34 1 2.5903 -3.1354 0.5128 35 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259700858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:53 Heat of formation + Delta-G solvation = -36.992201 kcal Electronic energy + Delta-G solvation = -17593.023206 eV Core-core repulsion = 14592.138611 eV Total energy + Delta-G solvation = -3000.884595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.36536 -39.27045 -35.20475 -34.96210 -33.64082 -32.88456 -31.01907 -29.45956 -29.04910 -25.39729 -24.36528 -22.00271 -21.15871 -20.77695 -20.05903 -17.37925 -16.70496 -16.47110 -16.06782 -15.45447 -15.23111 -14.48051 -14.32048 -14.13546 -13.51819 -13.44426 -13.31407 -13.09663 -13.06310 -12.57869 -12.31712 -12.29940 -11.99585 -11.22947 -11.04470 -10.94845 -10.65602 -10.49038 -10.35904 -9.90076 -9.54396 -9.26135 -8.59748 -8.53942 -8.39093 -6.10826 -4.13674 1.37056 2.51103 2.62457 2.87561 3.28956 3.35086 3.39190 3.60636 3.93653 4.41001 4.58176 4.70249 4.87620 5.00805 5.10217 5.13523 5.15215 5.26398 5.38152 5.43121 5.53030 5.62587 5.92623 6.03184 6.26595 6.31915 6.32492 6.70473 6.83290 7.48994 7.59300 7.73869 7.86611 7.90925 8.25214 8.53724 8.92191 9.51309 11.00759 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.052955 B = 0.003262 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.627558 B = 8581.832290 C = 8668.384859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.016 4.016 3 N -0.470 5.470 4 C 0.219 3.781 5 C -0.048 4.048 6 C 0.510 3.490 7 O -0.540 6.540 8 N -0.718 5.718 9 C 0.122 3.878 10 C 0.013 3.987 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 O -0.196 6.196 20 C -0.054 4.054 21 C -0.065 4.065 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.400 0.600 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 -12.428 -11.884 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 N -0.199 5.199 4 C 0.011 3.989 5 C -0.089 4.089 6 C 0.293 3.707 7 O -0.417 6.417 8 N -0.368 5.368 9 C 0.000 4.000 10 C -0.025 4.025 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.197 1.197 19 O -0.083 6.083 20 C -0.107 4.107 21 C -0.121 4.121 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.153 0.847 27 H 0.234 0.766 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.590 -12.040 -11.229 21.998 hybrid contribution 0.942 -0.155 0.607 1.131 sum -13.648 -12.195 -10.623 21.162 Atomic orbital electron populations 1.20089 0.86623 1.03058 1.02839 1.21496 0.97883 0.87733 1.06444 1.70293 1.00348 1.31293 1.17985 1.25091 0.94595 0.78921 1.00263 1.20087 0.92352 0.98495 0.97921 1.20060 0.81121 0.79646 0.89853 1.90734 1.53153 1.51864 1.45962 1.46242 1.30262 1.49156 1.11138 1.21768 0.99118 0.99868 0.79266 1.19331 0.90912 0.94000 0.98234 1.21049 1.13330 1.29876 0.91853 0.92248 1.24993 0.96209 0.95642 0.97427 1.69953 1.19517 1.33027 1.30798 0.86507 0.78810 0.77622 0.84593 1.20555 1.21142 1.19714 1.84348 1.30160 1.23894 1.69860 1.23120 0.80835 0.98184 1.08607 1.20234 1.01944 0.86532 1.03433 0.90760 0.90629 0.90907 0.85996 0.84741 0.76611 0.92407 0.92471 0.95859 0.95813 0.92819 0.90014 0.90312 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.05 36.00 0.36 -0.28 16 2 C -0.02 -0.21 7.11 -82.81 -0.59 -0.80 16 3 N -0.47 -7.59 11.29 -7.36 -0.08 -7.68 16 4 C 0.22 3.34 6.84 -12.94 -0.09 3.25 16 5 C -0.05 -0.59 6.33 -29.04 -0.18 -0.77 16 6 C 0.51 8.67 7.82 -10.98 -0.09 8.58 16 7 O -0.54 -11.73 16.03 5.55 0.09 -11.64 16 8 N -0.72 -12.11 5.56 -60.29 -0.33 -12.44 16 9 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 10 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 11 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 O -0.20 -2.94 10.78 5.36 0.06 -2.89 16 20 C -0.05 -0.69 7.39 -35.68 -0.26 -0.96 16 21 C -0.06 -0.49 10.04 36.01 0.36 -0.13 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 25 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.40 5.51 8.47 -40.82 -0.35 5.17 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.52 7.80 -51.93 -0.40 0.12 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -35.41 310.17 -5.87 -41.28 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.92 Total: -0.80 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.06 Total: -1.61 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.32 Total: -45.38 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.15 Total: -14.53 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.41 -5.87 -41.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.284 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds