Wall clock time and date at job start Mon Mar 30 2020 04:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46885 * 2 1 4 4 C 1.52995 * 109.47672 * 119.99806 * 2 1 3 5 5 H 1.08998 * 109.47763 * 184.25352 * 4 2 1 6 6 C 1.50704 * 109.46966 * 304.25551 * 4 2 1 7 7 H 1.08003 * 120.00390 * 64.53846 * 6 4 2 8 8 C 1.37883 * 119.99717 * 244.54320 * 6 4 2 9 9 N 1.31515 * 119.99994 * 354.43439 * 8 6 4 10 10 Si 1.86793 * 120.00004 * 174.44188 * 8 6 4 11 11 H 1.48504 * 109.47232 * 59.99706 * 10 8 6 12 12 H 1.48503 * 109.47459 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47437 * 299.99703 * 10 8 6 14 14 N 1.46499 * 109.46959 * 64.24915 * 4 2 1 15 15 C 1.34773 * 120.00101 * 84.99980 * 14 4 2 16 16 O 1.21285 * 119.99619 * 0.02562 * 15 14 4 17 17 C 1.50695 * 120.00370 * 179.97438 * 15 14 4 18 18 C 1.50706 * 109.47396 * 180.02562 * 17 15 14 19 19 N 1.30253 * 125.61749 * 90.00081 * 18 17 15 20 20 C 1.34478 * 108.69970 * 179.97438 * 19 18 17 21 21 C 1.34332 * 107.66693 * 0.02562 * 20 19 18 22 22 O 1.33962 * 125.61733 * 269.69534 * 18 17 15 23 23 H 1.09001 * 109.47128 * 299.99888 * 1 2 3 24 24 H 1.09003 * 109.47875 * 59.99943 * 1 2 3 25 25 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47128 * 240.00112 * 2 1 3 27 27 H 1.08996 * 109.46699 * 183.54286 * 3 2 1 28 28 H 1.08997 * 109.46737 * 303.53754 * 3 2 1 29 29 H 1.09001 * 109.46903 * 63.53911 * 3 2 1 30 30 H 0.96994 * 119.99966 * 180.02562 * 9 8 6 31 31 H 0.97003 * 119.99983 * 265.00068 * 14 4 2 32 32 H 1.09005 * 109.47207 * 300.00284 * 17 15 14 33 33 H 1.08997 * 109.47229 * 60.00139 * 17 15 14 34 34 H 1.07998 * 126.16516 * 180.02562 * 20 19 18 35 35 H 1.08000 * 126.43947 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1274 -0.6556 1.2881 6 6 1.4535 -0.0742 2.4774 7 1 0.3878 -0.1083 2.6491 8 6 2.2775 0.5614 3.3820 9 7 3.5830 0.5096 3.2315 10 14 1.5397 1.4959 4.8212 11 1 0.7391 0.5656 5.6573 12 1 2.6296 2.0839 5.6407 13 1 0.6637 2.5807 4.3102 14 7 1.6371 -2.1288 1.1992 15 6 2.3932 -3.0229 0.5318 16 8 3.4075 -2.6621 -0.0268 17 6 1.9791 -4.4709 0.4808 18 6 2.9873 -5.2539 -0.3202 19 7 4.0487 -5.8375 0.1589 20 6 4.7044 -6.4363 -0.8510 21 6 4.0136 -6.2049 -1.9796 22 8 2.9365 -5.4691 -1.6415 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1280 1.4432 -0.0635 28 1 1.6257 1.9743 -0.8566 29 1 1.7293 1.9378 0.9200 30 1 4.1627 0.9564 3.8680 31 1 0.8261 -2.4173 1.6463 32 1 1.9307 -4.8709 1.4937 33 1 0.9990 -4.5522 0.0109 34 1 5.6211 -7.0015 -0.7693 35 1 4.2704 -6.5484 -2.9708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:32 Heat of formation + Delta-G solvation = -28.138101 kcal Electronic energy + Delta-G solvation = -18682.170874 eV Core-core repulsion = 15681.670221 eV Total energy + Delta-G solvation = -3000.500653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.10589 -38.85634 -35.89350 -34.52254 -32.51456 -32.24110 -31.70969 -28.13132 -26.34961 -26.13096 -23.28671 -22.39962 -21.47972 -19.93091 -18.58824 -17.55405 -17.08591 -16.31272 -15.46696 -15.22616 -15.15813 -14.46334 -14.24587 -13.61596 -13.37143 -13.02626 -12.92542 -12.79556 -12.15391 -11.79349 -11.53045 -11.11956 -11.04657 -10.98005 -10.91089 -10.37939 -10.36152 -10.13289 -10.01956 -9.78991 -9.15933 -8.93701 -8.73320 -8.57929 -7.72231 -6.17067 -4.26621 1.62747 2.82717 2.93159 3.22707 3.30040 3.30294 3.42905 4.07070 4.27777 4.39214 5.03149 5.11812 5.18256 5.38235 5.52710 5.59343 5.93700 6.04166 6.08483 6.12852 6.19221 6.44448 6.55064 6.79402 6.85247 6.89232 7.22581 7.29909 7.45027 7.59081 7.70431 7.76370 7.93262 8.02123 8.73332 8.90039 9.17987 9.41493 10.89472 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.005573 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.780330 B = 5023.339917 C = 5438.588785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.123 4.123 4 C 0.249 3.751 5 H 0.089 0.911 6 C -0.524 4.524 7 H 0.061 0.939 8 C 0.076 3.924 9 N -0.874 5.874 10 Si 0.894 3.106 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.700 5.700 15 C 0.503 3.497 16 O -0.547 6.547 17 C -0.054 4.054 18 C 0.227 3.773 19 N -0.479 5.479 20 C -0.042 4.042 21 C -0.084 4.084 22 O -0.200 6.200 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.267 0.733 31 H 0.386 0.614 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.181 0.819 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -9.481 -6.674 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 C -0.181 4.181 4 C 0.149 3.851 5 H 0.107 0.893 6 C -0.563 4.563 7 H 0.079 0.921 8 C -0.130 4.130 9 N -0.509 5.509 10 Si 0.722 3.278 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.348 5.348 15 C 0.285 3.715 16 O -0.426 6.426 17 C -0.095 4.095 18 C 0.019 3.981 19 N -0.208 5.208 20 C -0.181 4.181 21 C -0.155 4.155 22 O -0.087 6.087 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.219 0.781 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.198 0.802 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.302 -9.091 -6.366 11.579 hybrid contribution -0.680 0.203 0.202 0.738 sum -3.982 -8.887 -6.165 11.526 Atomic orbital electron populations 1.21725 0.96946 0.99875 1.00391 1.21406 0.94692 0.96541 0.98809 1.21553 1.00095 0.96114 1.00369 1.19133 0.99524 0.74678 0.91749 0.89345 1.21034 0.93577 1.35452 1.06201 0.92121 1.25045 0.94711 0.95864 0.97364 1.69925 1.02670 1.41673 1.36665 0.86630 0.78826 0.80285 0.82108 1.20079 1.21201 1.19932 1.47107 1.25898 1.10764 1.51046 1.20028 0.84840 0.86154 0.80430 1.90698 1.25425 1.80289 1.46196 1.20243 0.95653 0.93431 1.00193 1.25444 0.96102 0.97892 0.78616 1.70434 1.05169 1.12202 1.32969 1.23315 1.02510 1.03821 0.88457 1.24913 0.88675 1.00249 1.01667 1.84418 1.41698 1.55574 1.26969 0.91789 0.95292 0.94378 0.94314 0.93713 0.95416 0.91538 0.92330 0.78145 0.85274 0.86692 0.80193 0.77131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.73 37.15 0.32 -2.12 16 2 C -0.09 -2.05 2.87 -90.62 -0.26 -2.31 16 3 C -0.12 -2.65 9.06 37.16 0.34 -2.31 16 4 C 0.25 5.98 2.08 -69.08 -0.14 5.83 16 5 H 0.09 2.57 6.36 -51.93 -0.33 2.24 16 6 C -0.52 -12.93 6.43 -34.44 -0.22 -13.15 16 7 H 0.06 1.43 6.89 -52.48 -0.36 1.07 16 8 C 0.08 1.97 5.43 -17.82 -0.10 1.88 16 9 N -0.87 -24.46 12.62 55.43 0.70 -23.76 16 10 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 N -0.70 -14.21 4.49 -54.94 -0.25 -14.46 16 15 C 0.50 10.25 7.79 -10.99 -0.09 10.16 16 16 O -0.55 -13.83 15.70 5.55 0.09 -13.74 16 17 C -0.05 -0.81 6.33 -29.03 -0.18 -1.00 16 18 C 0.23 3.89 6.84 -12.94 -0.09 3.80 16 19 N -0.48 -8.59 11.29 -11.10 -0.13 -8.71 16 20 C -0.04 -0.60 11.89 -17.77 -0.21 -0.81 16 21 C -0.08 -1.08 12.18 29.35 0.36 -0.72 16 22 O -0.20 -3.20 10.78 5.38 0.06 -3.14 16 23 H 0.06 1.22 6.59 -51.93 -0.34 0.88 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.64 7.73 -51.93 -0.40 0.24 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.50 7.22 -51.93 -0.38 1.13 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 6.61 8.59 -40.82 -0.35 6.26 16 32 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.21 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -32.87 302.01 -4.95 -37.82 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.68 Total: 7.24 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.27 Total: -0.75 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.33 Total: -46.93 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.15 Total: -16.89 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.87 -4.95 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.682 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds