Wall clock time and date at job start Mon Mar 30 2020 04:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46885 * 2 1 4 4 C 1.52995 * 109.47672 * 119.99806 * 2 1 3 5 5 H 1.08998 * 109.47763 * 184.25352 * 4 2 1 6 6 C 1.50704 * 109.46966 * 304.25551 * 4 2 1 7 7 H 1.08003 * 120.00390 * 64.53846 * 6 4 2 8 8 C 1.37883 * 119.99717 * 244.54320 * 6 4 2 9 9 N 1.31515 * 119.99994 * 354.43439 * 8 6 4 10 10 Si 1.86793 * 120.00004 * 174.44188 * 8 6 4 11 11 H 1.48504 * 109.47232 * 59.99706 * 10 8 6 12 12 H 1.48503 * 109.47459 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47437 * 299.99703 * 10 8 6 14 14 N 1.46499 * 109.46959 * 64.24915 * 4 2 1 15 15 C 1.34773 * 120.00101 * 84.99980 * 14 4 2 16 16 O 1.21285 * 119.99619 * 0.02562 * 15 14 4 17 17 C 1.50695 * 120.00370 * 179.97438 * 15 14 4 18 18 C 1.50706 * 109.47396 * 180.02562 * 17 15 14 19 19 N 1.30253 * 125.61749 * 90.00081 * 18 17 15 20 20 C 1.34478 * 108.69970 * 179.97438 * 19 18 17 21 21 C 1.34332 * 107.66693 * 0.02562 * 20 19 18 22 22 O 1.33962 * 125.61733 * 269.69534 * 18 17 15 23 23 H 1.09001 * 109.47128 * 299.99888 * 1 2 3 24 24 H 1.09003 * 109.47875 * 59.99943 * 1 2 3 25 25 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47128 * 240.00112 * 2 1 3 27 27 H 1.08996 * 109.46699 * 183.54286 * 3 2 1 28 28 H 1.08997 * 109.46737 * 303.53754 * 3 2 1 29 29 H 1.09001 * 109.46903 * 63.53911 * 3 2 1 30 30 H 0.96994 * 119.99966 * 180.02562 * 9 8 6 31 31 H 0.97003 * 119.99983 * 265.00068 * 14 4 2 32 32 H 1.09005 * 109.47207 * 300.00284 * 17 15 14 33 33 H 1.08997 * 109.47229 * 60.00139 * 17 15 14 34 34 H 1.07998 * 126.16516 * 180.02562 * 20 19 18 35 35 H 1.08000 * 126.43947 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1274 -0.6556 1.2881 6 6 1.4535 -0.0742 2.4774 7 1 0.3878 -0.1083 2.6491 8 6 2.2775 0.5614 3.3820 9 7 3.5830 0.5096 3.2315 10 14 1.5397 1.4959 4.8212 11 1 0.7391 0.5656 5.6573 12 1 2.6296 2.0839 5.6407 13 1 0.6637 2.5807 4.3102 14 7 1.6371 -2.1288 1.1992 15 6 2.3932 -3.0229 0.5318 16 8 3.4075 -2.6621 -0.0268 17 6 1.9791 -4.4709 0.4808 18 6 2.9873 -5.2539 -0.3202 19 7 4.0487 -5.8375 0.1589 20 6 4.7044 -6.4363 -0.8510 21 6 4.0136 -6.2049 -1.9796 22 8 2.9365 -5.4691 -1.6415 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1280 1.4432 -0.0635 28 1 1.6257 1.9743 -0.8566 29 1 1.7293 1.9378 0.9200 30 1 4.1627 0.9564 3.8680 31 1 0.8261 -2.4173 1.6463 32 1 1.9307 -4.8709 1.4937 33 1 0.9990 -4.5522 0.0109 34 1 5.6211 -7.0015 -0.7693 35 1 4.2704 -6.5484 -2.9708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:32 Heat of formation + Delta-G solvation = -53.746482 kcal Electronic energy + Delta-G solvation = -18683.281337 eV Core-core repulsion = 15681.670221 eV Total energy + Delta-G solvation = -3001.611115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.24648 -40.54443 -37.66421 -35.71489 -34.25074 -34.08944 -33.02065 -29.45665 -28.10563 -27.75736 -25.09470 -23.51192 -22.82361 -21.50952 -20.35455 -19.07254 -18.32338 -17.84213 -17.00322 -16.90356 -16.43711 -16.16291 -15.69416 -15.26696 -14.81372 -14.61502 -14.42330 -13.99944 -13.88097 -13.30979 -13.09365 -12.83217 -12.73683 -12.58189 -12.32881 -12.11932 -11.94028 -11.73312 -11.56888 -11.54388 -10.85621 -10.83402 -10.59493 -9.80246 -9.49319 -8.13874 -6.28751 0.49896 1.47039 1.47794 1.55698 1.68432 1.81507 1.87670 2.41450 2.68499 3.14381 3.29371 3.99107 4.06072 4.18326 4.37454 4.40170 4.45398 4.49855 4.54199 4.86760 4.98392 4.99450 5.08523 5.16568 5.25223 5.34800 5.52348 5.54768 5.64509 5.68929 5.79472 6.01992 6.13672 6.78589 6.93522 7.04005 7.41484 7.62538 8.93614 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.005573 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.780330 B = 5023.339917 C = 5438.588785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 C -0.117 4.117 4 C 0.253 3.747 5 H 0.029 0.971 6 C -0.518 4.518 7 H 0.077 0.923 8 C 0.023 3.977 9 N -0.922 5.922 10 Si 0.958 3.042 11 H -0.264 1.264 12 H -0.296 1.296 13 H -0.264 1.264 14 N -0.695 5.695 15 C 0.498 3.502 16 O -0.604 6.604 17 C -0.040 4.040 18 C 0.199 3.801 19 N -0.514 5.514 20 C -0.069 4.069 21 C -0.067 4.067 22 O -0.212 6.212 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.024 0.976 27 H 0.016 0.984 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.405 0.595 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 -10.468 -7.322 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.113 4.113 3 C -0.175 4.175 4 C 0.151 3.849 5 H 0.047 0.953 6 C -0.556 4.556 7 H 0.095 0.905 8 C -0.178 4.178 9 N -0.560 5.560 10 Si 0.783 3.217 11 H -0.189 1.189 12 H -0.222 1.222 13 H -0.189 1.189 14 N -0.344 5.344 15 C 0.283 3.717 16 O -0.486 6.486 17 C -0.080 4.080 18 C -0.008 4.008 19 N -0.245 5.245 20 C -0.207 4.207 21 C -0.137 4.137 22 O -0.098 6.098 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.240 0.760 32 H 0.169 0.831 33 H 0.177 0.823 34 H 0.225 0.775 35 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -5.734 -10.103 -7.008 13.567 hybrid contribution 0.133 0.430 0.289 0.535 sum -5.600 -9.673 -6.719 13.041 Atomic orbital electron populations 1.21620 0.93734 1.01319 1.01266 1.21343 0.97289 0.95857 0.96831 1.21493 0.98483 0.96566 1.00985 1.18806 0.96249 0.76850 0.93013 0.95266 1.21322 0.94121 1.34418 1.05759 0.90484 1.25848 0.94801 0.96974 1.00163 1.70121 1.04338 1.43617 1.37939 0.85614 0.77803 0.79277 0.78979 1.18896 1.22200 1.18872 1.46749 1.26626 1.09744 1.51253 1.20856 0.83637 0.88295 0.78891 1.90670 1.27833 1.81721 1.48407 1.20221 0.97093 0.88752 1.01930 1.25720 0.96759 0.99054 0.79306 1.70389 1.05967 1.13148 1.34967 1.23899 1.03835 1.04640 0.88324 1.25906 0.86789 0.97774 1.03234 1.84418 1.42826 1.56015 1.26553 0.92208 0.93051 0.92689 0.95738 0.96426 0.92244 0.92913 0.92935 0.75972 0.83069 0.82268 0.77459 0.72316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.73 71.98 0.63 -3.57 16 2 C -0.09 -4.01 2.87 -10.79 -0.03 -4.05 16 3 C -0.12 -5.07 9.06 71.99 0.65 -4.42 16 4 C 0.25 12.32 2.08 44.24 0.09 12.42 16 5 H 0.03 1.79 6.36 -2.39 -0.02 1.78 16 6 C -0.52 -25.40 6.43 25.60 0.16 -25.23 16 7 H 0.08 3.48 6.89 -2.91 -0.02 3.46 16 8 C 0.02 1.21 5.43 84.66 0.46 1.67 16 9 N -0.92 -53.78 12.62 21.45 0.27 -53.51 16 10 Si 0.96 40.97 29.54 68.60 2.03 43.00 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.30 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 14 N -0.70 -27.89 4.49 -446.11 -2.00 -29.89 16 15 C 0.50 20.29 7.79 87.66 0.68 20.97 16 16 O -0.60 -31.60 15.70 -3.04 -0.05 -31.65 16 17 C -0.04 -1.13 6.33 29.10 0.18 -0.94 16 18 C 0.20 6.63 6.84 88.34 0.60 7.23 16 19 N -0.51 -18.25 11.29 -303.83 -3.43 -21.68 16 20 C -0.07 -1.88 11.89 83.39 0.99 -0.89 16 21 C -0.07 -1.57 12.18 66.93 0.81 -0.75 16 22 O -0.21 -6.43 10.78 -3.67 -0.04 -6.47 16 23 H 0.06 2.11 6.59 -2.39 -0.02 2.09 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.68 7.73 -2.39 -0.02 1.66 16 26 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 2.39 7.22 -2.39 -0.02 2.37 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.40 13.09 8.59 -92.71 -0.80 12.29 16 32 H 0.15 3.57 8.14 -2.38 -0.02 3.55 16 33 H 0.16 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.21 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.26 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -75.90 302.01 2.32 -73.57 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.30 Total: 24.21 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.24 Total: 2.43 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -5.16 Total: -105.09 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.09 Total: -38.12 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -75.90 2.32 -73.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.827 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds