Wall clock time and date at job start Mon Mar 30 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47135 * 2 1 4 4 C 1.52996 * 109.47315 * 239.99507 * 2 1 3 5 5 H 1.08995 * 109.47340 * 176.63486 * 4 2 1 6 6 C 1.50708 * 109.46733 * 56.64061 * 4 2 1 7 7 H 1.08002 * 120.00178 * 1.11099 * 6 4 2 8 8 C 1.37882 * 119.99712 * 181.12325 * 6 4 2 9 9 N 1.31512 * 119.99668 * 172.20524 * 8 6 4 10 10 Si 1.86797 * 120.00060 * 352.19979 * 8 6 4 11 11 H 1.48498 * 109.47225 * 93.42772 * 10 8 6 12 12 H 1.48505 * 109.47177 * 213.43045 * 10 8 6 13 13 H 1.48506 * 109.47175 * 333.42590 * 10 8 6 14 14 N 1.46499 * 109.47396 * 296.63801 * 4 2 1 15 15 C 1.34773 * 120.00044 * 275.00207 * 14 4 2 16 16 O 1.21278 * 119.99733 * 359.97438 * 15 14 4 17 17 C 1.50700 * 119.99899 * 179.97438 * 15 14 4 18 18 C 1.50701 * 109.46724 * 179.97438 * 17 15 14 19 19 N 1.30263 * 125.61736 * 90.00527 * 18 17 15 20 20 C 1.34477 * 108.69634 * 179.97438 * 19 18 17 21 21 C 1.34324 * 107.67305 * 359.97438 * 20 19 18 22 22 O 1.33966 * 125.62331 * 269.68457 * 18 17 15 23 23 H 1.09004 * 109.46801 * 60.00217 * 1 2 3 24 24 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47244 * 300.00614 * 1 2 3 26 26 H 1.09005 * 109.47319 * 119.99722 * 2 1 3 27 27 H 1.08996 * 109.47720 * 56.46564 * 3 2 1 28 28 H 1.09001 * 109.46954 * 176.46597 * 3 2 1 29 29 H 1.08996 * 109.46946 * 296.46337 * 3 2 1 30 30 H 0.96998 * 119.99590 * 180.02562 * 9 8 6 31 31 H 0.97006 * 119.99858 * 94.99603 * 14 4 2 32 32 H 1.09000 * 109.47029 * 299.99457 * 17 15 14 33 33 H 1.08996 * 109.47217 * 60.00054 * 17 15 14 34 34 H 1.08004 * 126.16096 * 180.02562 * 20 19 18 35 35 H 1.08004 * 126.44438 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 3.1283 -0.6694 -1.2798 6 6 1.4708 -0.0606 -2.4783 7 1 0.8256 0.7998 -2.3791 8 6 1.7735 -0.5549 -3.7294 9 7 1.1596 -0.0789 -4.7905 10 14 3.0557 -1.9003 -3.9170 11 1 2.3869 -3.2261 -3.9077 12 1 3.7787 -1.7195 -5.2015 13 1 4.0209 -1.8248 -2.7909 14 7 1.6190 -2.1240 -1.2093 15 6 2.3589 -3.0309 -0.5411 16 8 3.3734 -2.6859 0.0268 17 6 1.9254 -4.4736 -0.4996 18 6 2.9179 -5.2733 0.3045 19 7 2.8601 -5.4832 1.5888 20 6 3.9131 -6.2375 1.9501 21 6 4.6312 -6.4920 0.8438 22 8 4.0017 -5.8905 -0.1846 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6259 1.9744 0.8566 28 1 3.1282 1.4431 0.0633 29 1 1.7293 1.9377 -0.9200 30 1 1.3723 -0.4268 -5.6706 31 1 0.8076 -2.3999 -1.6637 32 1 0.9412 -4.5441 -0.0366 33 1 1.8786 -4.8682 -1.5146 34 1 4.1400 -6.5782 2.9496 35 1 5.5400 -7.0729 0.7883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:34 Heat of formation + Delta-G solvation = -23.631454 kcal Electronic energy + Delta-G solvation = -18950.478337 eV Core-core repulsion = 15950.173107 eV Total energy + Delta-G solvation = -3000.305230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.19847 -39.16019 -36.13059 -34.61516 -32.74987 -32.37431 -31.83325 -28.34567 -26.79340 -26.25267 -23.12190 -22.48634 -21.62147 -19.96360 -18.70619 -17.73668 -17.23936 -16.79642 -15.76638 -15.51932 -14.98459 -14.67633 -14.03523 -14.00452 -13.45641 -13.11181 -13.04976 -12.88556 -12.43986 -11.94041 -11.67712 -11.29874 -11.20203 -11.08016 -11.03283 -10.52754 -10.47940 -10.21137 -9.96888 -9.77840 -9.52874 -9.10979 -8.74221 -8.70471 -8.03908 -6.30119 -4.34137 1.53909 2.72932 2.83626 3.12318 3.18337 3.36255 3.45157 3.92584 4.19644 4.28772 4.95032 5.02284 5.09820 5.32177 5.39625 5.42400 5.82826 5.87004 5.92743 5.95903 5.99763 6.34761 6.40901 6.60044 6.62835 6.71317 6.92008 7.00321 7.10128 7.18984 7.39230 7.59174 7.82746 8.13803 8.52247 8.76378 8.95591 9.32282 10.79353 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.007485 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.836906 B = 3740.106421 C = 4529.167287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 C -0.135 4.135 4 C 0.233 3.767 5 H 0.052 0.948 6 C -0.519 4.519 7 H 0.090 0.910 8 C 0.083 3.917 9 N -0.881 5.881 10 Si 0.871 3.129 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.258 1.258 14 N -0.705 5.705 15 C 0.502 3.498 16 O -0.546 6.546 17 C -0.058 4.058 18 C 0.225 3.775 19 N -0.478 5.478 20 C -0.043 4.043 21 C -0.082 4.082 22 O -0.199 6.199 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.182 0.818 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -10.229 7.880 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 C -0.192 4.192 4 C 0.133 3.867 5 H 0.069 0.931 6 C -0.557 4.557 7 H 0.107 0.893 8 C -0.123 4.123 9 N -0.517 5.517 10 Si 0.699 3.301 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.183 1.183 14 N -0.356 5.356 15 C 0.285 3.715 16 O -0.425 6.425 17 C -0.099 4.099 18 C 0.018 3.982 19 N -0.208 5.208 20 C -0.182 4.182 21 C -0.152 4.152 22 O -0.085 6.085 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.151 0.849 33 H 0.135 0.865 34 H 0.199 0.801 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.654 -9.708 8.408 12.948 hybrid contribution 0.986 -1.348 -0.813 1.857 sum 2.640 -11.055 7.595 13.670 Atomic orbital electron populations 1.21732 0.95841 1.00695 1.00736 1.21232 0.95681 0.96039 0.98089 1.21710 1.00036 0.96248 1.01255 1.19284 0.96672 0.76522 0.94220 0.93066 1.21224 1.31361 1.15082 0.88038 0.89260 1.25064 0.95058 0.96249 0.95930 1.69924 1.40216 1.42629 0.98935 0.86879 0.83174 0.82072 0.77949 1.20436 1.21939 1.18263 1.47572 1.26781 1.10353 1.50868 1.20167 0.84893 0.86445 0.80019 1.90680 1.25472 1.80987 1.45353 1.20274 0.96319 0.92618 1.00722 1.25388 0.87812 0.95861 0.89144 1.70418 1.23696 1.15951 1.10702 1.23305 0.93286 1.01074 1.00515 1.24951 1.01175 1.03372 0.85738 1.84440 1.33434 1.52188 1.38453 0.91316 0.93815 0.95000 0.93297 0.94458 0.93721 0.91275 0.92301 0.77086 0.84923 0.86477 0.80102 0.77064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.76 37.16 0.33 -2.08 16 2 C -0.09 -1.82 2.86 -90.62 -0.26 -2.08 16 3 C -0.13 -2.53 9.04 37.16 0.34 -2.20 16 4 C 0.23 5.24 1.13 -69.08 -0.08 5.17 16 5 H 0.05 1.31 6.41 -51.93 -0.33 0.98 16 6 C -0.52 -12.94 7.67 -34.43 -0.26 -13.21 16 7 H 0.09 2.38 5.93 -52.49 -0.31 2.06 16 8 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 9 N -0.88 -24.59 13.96 55.43 0.77 -23.82 16 10 Si 0.87 20.87 25.98 -169.99 -4.42 16.46 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.26 -6.54 6.44 56.52 0.36 -6.18 16 14 N -0.70 -14.11 2.49 -54.93 -0.14 -14.25 16 15 C 0.50 9.99 7.40 -10.99 -0.08 9.91 16 16 O -0.55 -13.06 15.70 5.56 0.09 -12.97 16 17 C -0.06 -0.89 6.33 -29.03 -0.18 -1.08 16 18 C 0.23 3.83 6.84 -12.94 -0.09 3.74 16 19 N -0.48 -8.14 11.29 -11.10 -0.13 -8.27 16 20 C -0.04 -0.59 11.89 -17.77 -0.21 -0.80 16 21 C -0.08 -1.03 12.18 29.35 0.36 -0.68 16 22 O -0.20 -3.26 10.77 5.38 0.06 -3.20 16 23 H 0.07 1.33 6.44 -51.93 -0.33 1.00 16 24 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.37 6.72 -51.93 -0.35 1.02 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.13 8.59 -40.82 -0.35 6.78 16 32 H 0.13 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.21 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -32.35 295.46 -4.18 -36.53 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.63 Total: 6.29 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.24 Total: -1.22 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.51 Total: -46.34 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.15 Total: -16.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.42 Total: 16.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.35 -4.18 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.902 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds