Wall clock time and date at job start Mon Mar 30 2020 04:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30621 * 125.42042 * 2 1 4 4 C 1.33694 * 108.99218 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.27349 * 180.02562 * 4 3 2 6 6 C 1.36341 * 107.45348 * 359.97438 * 4 3 2 7 7 C 1.46722 * 126.64633 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99678 * 359.97438 * 7 6 4 9 9 N 1.34768 * 120.00466 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00214 * 179.72713 * 9 7 6 11 11 C 1.53003 * 109.46937 * 300.27172 * 10 9 7 12 12 C 1.53001 * 109.47227 * 60.27341 * 10 9 7 13 13 C 1.50705 * 109.47230 * 180.27323 * 10 9 7 14 14 H 1.07996 * 120.00194 * 235.85288 * 13 10 9 15 15 C 1.37876 * 119.99519 * 55.84896 * 13 10 9 16 16 N 1.31522 * 119.99734 * 189.58443 * 15 13 10 17 17 Si 1.86801 * 120.00477 * 9.58789 * 15 13 10 18 18 H 1.48497 * 109.47019 * 84.87732 * 17 15 13 19 19 H 1.48496 * 109.47073 * 204.87625 * 17 15 13 20 20 H 1.48493 * 109.46922 * 324.87798 * 17 15 13 21 21 O 1.33662 * 125.42215 * 180.28438 * 2 1 3 22 22 H 1.08992 * 109.47259 * 90.02459 * 1 2 3 23 23 H 1.08999 * 109.47301 * 210.02763 * 1 2 3 24 24 H 1.09000 * 109.47213 * 330.02355 * 1 2 3 25 25 H 1.08998 * 109.46727 * 269.97603 * 5 4 3 26 26 H 1.09006 * 109.47005 * 29.97799 * 5 4 3 27 27 H 1.09003 * 109.47146 * 149.97343 * 5 4 3 28 28 H 0.97001 * 119.99781 * 359.97438 * 9 7 6 29 29 H 1.08996 * 109.46601 * 66.88575 * 11 10 9 30 30 H 1.09001 * 109.47140 * 186.88924 * 11 10 9 31 31 H 1.09000 * 109.46823 * 306.88774 * 11 10 9 32 32 H 1.08997 * 109.46854 * 59.99892 * 12 10 9 33 33 H 1.09000 * 109.46684 * 180.02562 * 12 10 9 34 34 H 1.09000 * 109.46913 * 300.00352 * 12 10 9 35 35 H 0.96994 * 120.00255 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5464 0.6863 -0.0006 5 6 4.7452 1.5995 -0.0002 6 6 3.5708 -0.6768 -0.0003 7 6 4.7635 -1.5314 -0.0013 8 8 5.8718 -1.0291 -0.0029 9 7 4.6316 -2.8726 -0.0015 10 6 5.8225 -3.7258 -0.0085 11 6 6.6538 -3.4308 -1.2587 12 6 6.6605 -3.4422 1.2398 13 6 5.4034 -5.1734 -0.0139 14 1 5.7595 -5.8416 0.7561 15 6 4.5652 -5.6446 -1.0021 16 7 4.0484 -6.8502 -0.9063 17 14 4.1635 -4.5707 -2.4768 18 1 5.2272 -4.7201 -3.5022 19 1 2.8595 -4.9875 -3.0521 20 1 4.0847 -3.1511 -2.0486 21 8 2.2817 -1.0892 -0.0054 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 5.0342 1.8200 -1.0278 26 1 4.4949 2.5275 0.5140 27 1 5.5735 1.1116 0.5135 28 1 3.7481 -3.2730 -0.0006 29 1 7.0588 -2.4209 -1.1956 30 1 7.4726 -4.1471 -1.3279 31 1 6.0221 -3.5145 -2.1430 32 1 6.0682 -3.6523 2.1304 33 1 7.5467 -4.0767 1.2343 34 1 6.9636 -2.3952 1.2438 35 1 3.4585 -7.1817 -1.6012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259719680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:33 Heat of formation + Delta-G solvation = -10.067223 kcal Electronic energy + Delta-G solvation = -19313.505096 eV Core-core repulsion = 16313.788055 eV Total energy + Delta-G solvation = -2999.717041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.25116 -39.25076 -35.83156 -35.02881 -32.70193 -32.27748 -30.83599 -29.27244 -26.95845 -26.47086 -25.30446 -22.28790 -21.63862 -20.42832 -19.16275 -17.91405 -16.90514 -16.85371 -15.63433 -14.80350 -14.79148 -14.17497 -14.06979 -13.66520 -13.26054 -13.06180 -12.99282 -12.90409 -12.68557 -12.41794 -12.32993 -11.97501 -11.30725 -11.11605 -11.02303 -10.85948 -10.69652 -10.38742 -10.22744 -9.92315 -9.61532 -8.96146 -8.71147 -8.62937 -7.91794 -6.37120 -4.41883 1.07986 2.53586 2.62721 3.15434 3.26734 3.29988 3.63919 3.81112 4.06609 4.19007 4.85841 4.96490 5.11215 5.20171 5.22225 5.47313 5.69366 5.75417 5.81112 6.00397 6.07643 6.10660 6.27009 6.41959 6.48634 6.63066 6.69499 6.84299 7.00142 7.20455 7.26195 7.52283 7.70858 8.10137 8.47463 8.69917 8.82680 9.24357 10.73670 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.008625 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.671534 B = 3245.495500 C = 3959.636160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.201 3.799 3 N -0.491 5.491 4 C 0.060 3.940 5 C -0.074 4.074 6 C -0.100 4.100 7 C 0.589 3.411 8 O -0.530 6.530 9 N -0.684 5.684 10 C 0.254 3.746 11 C -0.156 4.156 12 C -0.141 4.141 13 C -0.521 4.521 14 H 0.086 0.914 15 C 0.079 3.921 16 N -0.878 5.878 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.300 1.300 20 H -0.250 1.250 21 O -0.186 6.186 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.396 0.604 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 12.291 1.017 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.004 4.004 3 N -0.222 5.222 4 C -0.064 4.064 5 C -0.132 4.132 6 C -0.156 4.156 7 C 0.373 3.627 8 O -0.411 6.411 9 N -0.334 5.334 10 C 0.172 3.828 11 C -0.214 4.214 12 C -0.199 4.199 13 C -0.559 4.559 14 H 0.104 0.896 15 C -0.127 4.127 16 N -0.513 5.513 17 Si 0.708 3.292 18 H -0.205 1.205 19 H -0.227 1.227 20 H -0.175 1.175 21 O -0.072 6.072 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.232 0.768 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.679 12.955 0.951 13.807 hybrid contribution -0.667 -0.585 -0.996 1.333 sum -5.346 12.370 -0.045 13.476 Atomic orbital electron populations 1.20308 0.81137 1.05289 1.04835 1.26441 0.96633 0.78918 0.98447 1.70259 1.01779 1.30042 1.20116 1.21989 0.93255 0.91471 0.99724 1.20313 0.92451 0.97043 1.03345 1.23644 0.82596 0.95565 1.13752 1.16663 0.84904 0.82793 0.78388 1.90718 1.23157 1.74225 1.53037 1.47761 1.12221 1.04082 1.69304 1.18549 0.82113 0.89488 0.92630 1.22407 1.00125 1.01138 0.97766 1.21972 0.99419 1.00998 0.97483 1.21113 1.30275 0.91450 1.13020 0.89595 1.25120 0.94622 0.95056 0.97870 1.69922 1.30012 1.17508 1.33854 0.87211 0.76743 0.82032 0.83234 1.20523 1.22749 1.17494 1.84485 1.16532 1.37139 1.69089 0.88755 0.88992 0.88022 0.90495 0.91034 0.88513 0.76759 0.92519 0.92059 0.94576 0.93675 0.92678 0.92469 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 36.01 0.38 -0.14 16 2 C 0.20 2.98 8.32 -12.79 -0.11 2.87 16 3 N -0.49 -8.03 11.26 -7.07 -0.08 -8.11 16 4 C 0.06 1.03 7.16 -82.47 -0.59 0.44 16 5 C -0.07 -1.08 9.87 36.01 0.36 -0.73 16 6 C -0.10 -1.91 7.18 -36.84 -0.26 -2.18 16 7 C 0.59 12.30 7.00 -12.84 -0.09 12.21 16 8 O -0.53 -11.36 11.08 5.20 0.06 -11.30 16 9 N -0.68 -15.02 2.85 -49.96 -0.14 -15.16 16 10 C 0.25 5.82 0.63 -132.96 -0.08 5.74 16 11 C -0.16 -3.49 7.66 37.16 0.28 -3.20 16 12 C -0.14 -2.94 8.34 37.16 0.31 -2.63 16 13 C -0.52 -13.64 8.67 -34.44 -0.30 -13.94 16 14 H 0.09 2.43 7.99 -52.49 -0.42 2.02 16 15 C 0.08 2.13 5.29 -17.82 -0.09 2.03 16 16 N -0.88 -25.06 13.96 55.43 0.77 -24.28 16 17 Si 0.88 20.92 23.16 -169.99 -3.94 16.99 16 18 H -0.28 -6.72 7.01 56.52 0.40 -6.32 16 19 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.25 -5.76 5.09 56.52 0.29 -5.47 16 21 O -0.19 -3.30 10.57 4.42 0.05 -3.25 16 22 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 1.49 6.47 -51.93 -0.34 1.15 16 28 H 0.40 8.72 6.88 -40.82 -0.28 8.43 16 29 H 0.06 1.22 6.37 -51.93 -0.33 0.89 16 30 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 31 H 0.04 0.83 3.38 -51.93 -0.18 0.65 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.17 6.17 -51.93 -0.32 0.85 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 283.42 15.07 4.27 4.27 Total: -1.00 -30.36 283.42 -3.71 -34.07 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.50 Total: 6.29 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.20 Total: 0.48 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.55 Total: -47.56 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.10 Total: -14.55 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -3.94 Total: 16.99 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.36 -3.71 -34.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259719680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.004 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds