Wall clock time and date at job start Mon Mar 30 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30554 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48493 * 109.47262 * 270.00131 * 3 2 1 5 5 H 1.48500 * 109.46801 * 30.00467 * 3 2 1 6 6 H 1.48504 * 109.47039 * 149.99831 * 3 2 1 7 7 C 1.40589 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.39111 * 119.99619 * 359.97438 * 7 2 1 10 10 N 1.31763 * 126.82072 * 0.03458 * 9 7 2 11 11 N 1.39175 * 112.38990 * 180.10328 * 10 9 7 12 12 C 1.34776 * 111.43631 * 359.91393 * 11 10 9 13 13 O 1.21297 * 127.14320 * 180.02562 * 12 11 10 14 14 C 1.51449 * 126.64293 * 179.97438 * 9 7 2 15 15 H 1.09000 * 110.56247 * 61.25986 * 14 9 7 16 16 C 1.53000 * 110.56739 * 298.55364 * 14 9 7 17 17 C 1.52998 * 109.47103 * 177.03434 * 16 14 9 18 18 C 1.53207 * 109.54096 * 294.55940 * 17 16 14 19 19 C 1.53092 * 109.14859 * 183.15833 * 18 17 16 20 20 O 1.42905 * 109.42428 * 57.60656 * 19 18 17 21 21 C 1.42898 * 114.09851 * 298.83405 * 20 19 18 22 22 C 1.53097 * 109.41490 * 61.15689 * 21 20 19 23 23 H 0.96992 * 119.99979 * 359.97438 * 1 2 3 24 24 H 0.96997 * 124.28126 * 179.88704 * 11 10 9 25 25 H 1.08996 * 109.46806 * 57.03607 * 16 14 9 26 26 H 1.09000 * 109.47011 * 297.03205 * 16 14 9 27 27 H 1.09000 * 109.54605 * 54.82738 * 17 16 14 28 28 H 1.08999 * 109.53319 * 63.25352 * 18 17 16 29 29 H 1.08992 * 109.51748 * 303.05568 * 18 17 16 30 30 H 1.09002 * 109.48343 * 297.61643 * 19 18 17 31 31 H 1.08999 * 109.47546 * 177.59237 * 19 18 17 32 32 H 1.08995 * 109.48500 * 181.13987 * 21 20 19 33 33 H 1.09000 * 109.47974 * 301.16817 * 21 20 19 34 34 H 1.09003 * 109.51867 * 62.29966 * 22 21 20 35 35 H 1.09005 * 109.52093 * 182.41951 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.4871 2.0464 -1.4000 5 1 1.4371 2.6526 0.7001 6 1 3.5372 1.4401 0.7001 7 6 2.0085 -1.2175 -0.0005 8 1 3.0885 -1.2175 -0.0001 9 6 1.3130 -2.4222 -0.0005 10 7 0.0047 -2.5787 -0.0007 11 7 -0.3689 -3.9194 0.0017 12 6 0.7074 -4.7306 0.0017 13 8 0.7103 -5.9436 0.0030 14 6 1.9134 -3.8126 -0.0016 15 1 2.5164 -3.9699 0.8927 16 6 2.7541 -4.0341 -1.2606 17 6 3.4075 -5.4162 -1.2010 18 6 4.4105 -5.4593 -0.0436 19 6 5.1157 -6.8182 -0.0407 20 8 5.7574 -7.0233 -1.3010 21 6 4.8629 -7.0401 -2.4152 22 6 4.1474 -5.6902 -2.5139 23 1 -0.4850 0.8400 0.0004 24 1 -1.2876 -4.2305 0.0035 25 1 3.5278 -3.2687 -1.3201 26 1 2.1138 -3.9726 -2.1406 27 1 2.6407 -6.1758 -1.0492 28 1 3.8838 -5.3202 0.9005 29 1 5.1476 -4.6666 -0.1709 30 1 4.3831 -7.6076 0.1270 31 1 5.8610 -6.8390 0.7544 32 1 5.4260 -7.2208 -3.3308 33 1 4.1271 -7.8326 -2.2787 34 1 4.8793 -4.9022 -2.6910 35 1 3.4333 -5.7158 -3.3371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259744332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:06 Heat of formation + Delta-G solvation = -63.543476 kcal Electronic energy + Delta-G solvation = -18993.820582 eV Core-core repulsion = 15991.784637 eV Total energy + Delta-G solvation = -3002.035945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86497 -38.82416 -35.94025 -34.80688 -33.57837 -31.09116 -30.71876 -28.78769 -25.95657 -25.47637 -23.35722 -22.22019 -20.44843 -19.69433 -19.10854 -16.60651 -16.39484 -15.84856 -15.82067 -15.24778 -14.94366 -14.52612 -14.00048 -13.79697 -13.51050 -13.18518 -12.91100 -12.18410 -12.04465 -11.73169 -11.49784 -11.35147 -11.18577 -11.06497 -10.87336 -10.66509 -10.58873 -10.34510 -10.04929 -9.93171 -9.36830 -9.32344 -9.07524 -7.97348 -7.54829 -6.71593 -4.71468 2.87834 3.04600 3.07077 3.24703 3.86470 4.01641 4.06596 4.45916 4.91724 5.01181 5.12818 5.18199 5.21795 5.39489 5.41334 5.58878 5.67413 5.73969 5.77954 5.96983 6.01630 6.12255 6.17344 6.26548 6.33981 6.37441 6.52426 6.72663 6.83711 6.97368 7.24848 7.32730 7.86344 8.10872 8.51122 8.74584 9.25206 9.91250 10.19194 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024350 B = 0.006481 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.612383 B = 4319.444329 C = 5086.421463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.090 0.910 9 C 0.200 3.800 10 N -0.358 5.358 11 N -0.571 5.571 12 C 0.474 3.526 13 O -0.571 6.571 14 C -0.131 4.131 15 H 0.103 0.897 16 C -0.071 4.071 17 C -0.101 4.101 18 C -0.147 4.147 19 C 0.061 3.939 20 O -0.388 6.388 21 C 0.062 3.938 22 C -0.149 4.149 23 H 0.280 0.720 24 H 0.408 0.592 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 -4.653 -2.253 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.155 4.155 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.108 0.892 9 C 0.038 3.962 10 N -0.184 5.184 11 N -0.307 5.307 12 C 0.259 3.741 13 O -0.453 6.453 14 C -0.155 4.155 15 H 0.121 0.879 16 C -0.110 4.110 17 C -0.119 4.119 18 C -0.185 4.185 19 C -0.015 4.015 20 O -0.307 6.307 21 C -0.015 4.015 22 C -0.186 4.186 23 H 0.091 0.909 24 H 0.248 0.752 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.652 -4.827 -2.264 8.525 hybrid contribution 0.153 0.288 0.094 0.340 sum 6.804 -4.539 -2.171 8.462 Atomic orbital electron populations 1.69810 1.07407 1.28903 1.29758 1.26042 0.94857 1.01119 0.93527 0.86213 0.80336 0.80392 0.79296 1.19349 1.20147 1.18401 1.18441 0.94265 0.87860 1.45036 0.89188 1.21401 0.90310 0.90913 0.93601 1.77599 1.13258 0.88375 1.39204 1.47925 1.07614 1.06640 1.68553 1.21521 0.87786 0.87553 0.77230 1.90573 1.87063 1.12448 1.55207 1.21505 0.96492 0.96932 1.00582 0.87912 1.21151 0.98099 0.95941 0.95776 1.21384 0.97421 0.99309 0.93797 1.22224 0.98644 0.97844 0.99752 1.22582 0.96928 0.96415 0.85586 1.87864 1.34536 1.93235 1.15099 1.22548 0.93069 0.96517 0.89322 1.22221 0.99895 0.98107 0.98424 0.90903 0.75206 0.90642 0.92234 0.89164 0.90746 0.91175 0.93264 0.89290 0.89370 0.93394 0.91175 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.59 11.95 55.58 0.66 -17.93 16 2 C 0.07 1.66 5.51 -17.21 -0.09 1.56 16 3 Si 0.91 17.35 29.57 -169.99 -5.03 12.32 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.42 -10.01 9.26 -38.37 -0.36 -10.37 16 8 H 0.09 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.20 4.94 6.38 -81.93 -0.52 4.42 16 10 N -0.36 -9.40 10.63 33.85 0.36 -9.05 16 11 N -0.57 -13.47 7.10 31.45 0.22 -13.25 16 12 C 0.47 10.98 8.03 -10.56 -0.08 10.89 16 13 O -0.57 -13.80 16.18 5.54 0.09 -13.71 16 14 C -0.13 -2.82 2.83 -92.13 -0.26 -3.08 16 15 H 0.10 2.11 6.49 -51.93 -0.34 1.77 16 16 C -0.07 -1.32 4.17 -26.73 -0.11 -1.43 16 17 C -0.10 -1.65 2.19 -90.42 -0.20 -1.85 16 18 C -0.15 -2.19 5.12 -26.58 -0.14 -2.33 16 19 C 0.06 0.84 6.84 37.20 0.25 1.09 16 20 O -0.39 -5.65 10.77 -35.23 -0.38 -6.03 16 21 C 0.06 0.81 6.84 37.21 0.25 1.06 16 22 C -0.15 -2.07 5.42 -26.59 -0.14 -2.22 16 23 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 24 H 0.41 8.63 8.96 -183.29 -1.64 6.99 16 25 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.09 1.70 6.08 -51.93 -0.32 1.38 16 28 H 0.07 1.15 6.65 -51.93 -0.35 0.80 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 287.64 15.07 4.33 4.33 Total: -1.00 -28.82 287.64 -7.12 -35.94 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.99 Total: 9.61 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.40 Total: -2.24 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 1.25 Total: -40.23 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.29 Total: -19.74 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.82 -7.12 -35.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.601 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds