Wall clock time and date at job start Mon Mar 30 2020 03:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30554 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48493 * 109.47262 * 270.00131 * 3 2 1 5 5 H 1.48500 * 109.46801 * 30.00467 * 3 2 1 6 6 H 1.48504 * 109.47039 * 149.99831 * 3 2 1 7 7 C 1.40589 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.39111 * 119.99619 * 359.97438 * 7 2 1 10 10 N 1.31763 * 126.82072 * 0.03458 * 9 7 2 11 11 N 1.39175 * 112.38990 * 180.10328 * 10 9 7 12 12 C 1.34776 * 111.43631 * 359.91393 * 11 10 9 13 13 O 1.21297 * 127.14320 * 180.02562 * 12 11 10 14 14 C 1.51449 * 126.64293 * 179.97438 * 9 7 2 15 15 H 1.09000 * 110.56247 * 61.25986 * 14 9 7 16 16 C 1.53000 * 110.56739 * 298.55364 * 14 9 7 17 17 C 1.52998 * 109.47103 * 177.03434 * 16 14 9 18 18 C 1.53207 * 109.54096 * 294.55940 * 17 16 14 19 19 C 1.53092 * 109.14859 * 183.15833 * 18 17 16 20 20 O 1.42905 * 109.42428 * 57.60656 * 19 18 17 21 21 C 1.42898 * 114.09851 * 298.83405 * 20 19 18 22 22 C 1.53097 * 109.41490 * 61.15689 * 21 20 19 23 23 H 0.96992 * 119.99979 * 359.97438 * 1 2 3 24 24 H 0.96997 * 124.28126 * 179.88704 * 11 10 9 25 25 H 1.08996 * 109.46806 * 57.03607 * 16 14 9 26 26 H 1.09000 * 109.47011 * 297.03205 * 16 14 9 27 27 H 1.09000 * 109.54605 * 54.82738 * 17 16 14 28 28 H 1.08999 * 109.53319 * 63.25352 * 18 17 16 29 29 H 1.08992 * 109.51748 * 303.05568 * 18 17 16 30 30 H 1.09002 * 109.48343 * 297.61643 * 19 18 17 31 31 H 1.08999 * 109.47546 * 177.59237 * 19 18 17 32 32 H 1.08995 * 109.48500 * 181.13987 * 21 20 19 33 33 H 1.09000 * 109.47974 * 301.16817 * 21 20 19 34 34 H 1.09003 * 109.51867 * 62.29966 * 22 21 20 35 35 H 1.09005 * 109.52093 * 182.41951 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.4871 2.0464 -1.4000 5 1 1.4371 2.6526 0.7001 6 1 3.5372 1.4401 0.7001 7 6 2.0085 -1.2175 -0.0005 8 1 3.0885 -1.2175 -0.0001 9 6 1.3130 -2.4222 -0.0005 10 7 0.0047 -2.5787 -0.0007 11 7 -0.3689 -3.9194 0.0017 12 6 0.7074 -4.7306 0.0017 13 8 0.7103 -5.9436 0.0030 14 6 1.9134 -3.8126 -0.0016 15 1 2.5164 -3.9699 0.8927 16 6 2.7541 -4.0341 -1.2606 17 6 3.4075 -5.4162 -1.2010 18 6 4.4105 -5.4593 -0.0436 19 6 5.1157 -6.8182 -0.0407 20 8 5.7574 -7.0233 -1.3010 21 6 4.8629 -7.0401 -2.4152 22 6 4.1474 -5.6902 -2.5139 23 1 -0.4850 0.8400 0.0004 24 1 -1.2876 -4.2305 0.0035 25 1 3.5278 -3.2687 -1.3201 26 1 2.1138 -3.9726 -2.1406 27 1 2.6407 -6.1758 -1.0492 28 1 3.8838 -5.3202 0.9005 29 1 5.1476 -4.6666 -0.1709 30 1 4.3831 -7.6076 0.1270 31 1 5.8610 -6.8390 0.7544 32 1 5.4260 -7.2208 -3.3308 33 1 4.1271 -7.8326 -2.2787 34 1 4.8793 -4.9022 -2.6910 35 1 3.4333 -5.7158 -3.3371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:05 Heat of formation + Delta-G solvation = -83.003718 kcal Electronic energy + Delta-G solvation = -18994.664441 eV Core-core repulsion = 15991.784637 eV Total energy + Delta-G solvation = -3002.879804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55041 -40.09235 -37.81630 -36.15846 -35.40829 -32.58736 -31.96184 -30.46466 -27.84401 -26.94866 -24.47643 -23.60406 -22.21474 -21.19987 -20.66765 -18.42901 -18.21763 -17.04876 -16.94668 -16.81263 -16.59957 -15.66540 -15.56242 -15.38839 -15.09193 -14.71827 -14.33737 -13.60832 -13.33647 -13.27623 -13.00900 -12.87394 -12.69007 -12.64967 -12.35248 -12.18363 -11.94167 -11.88593 -11.29809 -11.21198 -11.11942 -10.82843 -10.46031 -9.82556 -9.43748 -8.50514 -6.63117 1.21303 1.50296 1.58904 1.64378 2.24326 2.26943 2.66671 2.98947 3.29295 3.53355 3.75977 3.83009 3.88868 4.09547 4.14146 4.31099 4.41601 4.49992 4.55458 4.63748 4.79601 4.82756 4.85985 4.99331 5.05451 5.08521 5.16947 5.19238 5.29037 5.41409 5.55651 6.05335 6.26904 6.27924 6.68218 6.87505 7.41929 8.04516 8.42142 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.024350 B = 0.006481 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.612383 B = 4319.444329 C = 5086.421463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.027 3.973 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.247 1.247 7 C -0.432 4.432 8 H 0.110 0.890 9 C 0.181 3.819 10 N -0.399 5.399 11 N -0.572 5.572 12 C 0.469 3.531 13 O -0.585 6.585 14 C -0.123 4.123 15 H 0.113 0.887 16 C -0.062 4.062 17 C -0.096 4.096 18 C -0.145 4.145 19 C 0.063 3.937 20 O -0.397 6.397 21 C 0.061 3.939 22 C -0.145 4.145 23 H 0.286 0.714 24 H 0.414 0.586 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -3.948 -2.556 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.196 4.196 3 Si 0.812 3.188 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.472 4.472 8 H 0.128 0.872 9 C 0.020 3.980 10 N -0.226 5.226 11 N -0.309 5.309 12 C 0.255 3.745 13 O -0.468 6.468 14 C -0.146 4.146 15 H 0.130 0.870 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.182 4.182 19 C -0.014 4.014 20 O -0.316 6.316 21 C -0.016 4.016 22 C -0.183 4.183 23 H 0.097 0.903 24 H 0.255 0.745 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.846 -4.142 -2.569 10.099 hybrid contribution -0.597 0.065 0.193 0.631 sum 8.249 -4.076 -2.376 9.503 Atomic orbital electron populations 1.69920 1.09392 1.30349 1.30352 1.27072 0.95513 1.04811 0.92172 0.85032 0.79117 0.75152 0.79479 1.18764 1.20048 1.17017 1.18976 0.95414 0.88130 1.44661 0.87174 1.21858 0.90429 0.92611 0.93091 1.77547 1.14572 0.89401 1.41129 1.47925 1.08240 1.06263 1.68464 1.21792 0.88348 0.87521 0.76876 1.90559 1.87372 1.12917 1.55948 1.21500 0.96110 0.94677 1.02352 0.86975 1.21122 0.97648 0.97825 0.93494 1.21285 0.97266 0.96850 0.96073 1.22202 0.98369 0.99118 0.98544 1.22632 0.97377 0.95288 0.86092 1.87859 1.35085 1.93163 1.15526 1.22673 0.93258 0.95670 0.89963 1.22196 0.99950 0.99122 0.96982 0.90337 0.74533 0.89419 0.93896 0.91817 0.91622 0.90296 0.93751 0.87108 0.86828 0.93555 0.90369 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -39.42 11.95 21.94 0.26 -39.15 16 2 C 0.03 1.24 5.51 85.46 0.47 1.71 16 3 Si 0.99 34.27 29.57 68.60 2.03 36.30 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 5 H -0.28 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.25 -7.96 7.11 99.48 0.71 -7.26 16 7 C -0.43 -20.46 9.26 23.05 0.21 -20.25 16 8 H 0.11 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.18 8.98 6.38 43.02 0.27 9.25 16 10 N -0.40 -21.35 10.63 -46.81 -0.50 -21.85 16 11 N -0.57 -27.63 7.10 -172.80 -1.23 -28.86 16 12 C 0.47 22.04 8.03 87.93 0.71 22.74 16 13 O -0.59 -28.62 16.18 -3.08 -0.05 -28.67 16 14 C -0.12 -5.27 2.83 -11.77 -0.03 -5.31 16 15 H 0.11 4.56 6.49 -2.39 -0.02 4.55 16 16 C -0.06 -2.28 4.17 30.59 0.13 -2.15 16 17 C -0.10 -3.06 2.19 -10.67 -0.02 -3.08 16 18 C -0.14 -4.08 5.12 30.69 0.16 -3.93 16 19 C 0.06 1.58 6.84 72.01 0.49 2.08 16 20 O -0.40 -10.60 10.77 -148.98 -1.60 -12.20 16 21 C 0.06 1.44 6.84 72.01 0.49 1.93 16 22 C -0.14 -3.78 5.42 30.69 0.17 -3.61 16 23 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 24 H 0.41 18.06 8.96 -213.91 -1.92 16.15 16 25 H 0.09 2.96 8.08 -2.39 -0.02 2.95 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 2.39 6.08 -2.39 -0.01 2.38 16 28 H 0.07 1.95 6.65 -2.39 -0.02 1.94 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -61.22 287.64 1.15 -60.07 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.81 Total: 34.98 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 3.04 Total: -0.62 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -1.46 Total: -89.86 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.65 Total: -40.87 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Total: -61.22 1.15 -60.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.930 kcal (2) G-P(sol) polarization free energy of solvation -61.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds