Wall clock time and date at job start Mon Mar 30 2020 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30619 * 125.42615 * 2 1 4 4 C 1.33691 * 108.99835 * 179.97438 * 3 2 1 5 5 C 1.36349 * 107.45101 * 0.02562 * 4 3 2 6 6 C 1.46721 * 126.63990 * 179.73854 * 5 4 3 7 7 O 1.21684 * 120.00425 * 353.96189 * 6 5 4 8 8 N 1.34777 * 119.99670 * 173.96594 * 6 5 4 9 9 C 1.46505 * 120.00105 * 4.30696 * 8 6 5 10 10 C 1.46497 * 120.00041 * 184.31310 * 8 6 5 11 11 C 1.53000 * 109.47417 * 174.56098 * 10 8 6 12 12 C 1.53000 * 109.46944 * 294.56117 * 10 8 6 13 13 C 1.50700 * 109.47418 * 54.55939 * 10 8 6 14 14 H 1.07997 * 119.99842 * 0.44893 * 13 10 8 15 15 C 1.37879 * 120.00423 * 180.44568 * 13 10 8 16 16 N 1.31512 * 119.99765 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00227 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47351 * 89.99825 * 17 15 13 19 19 H 1.48501 * 109.47184 * 209.99718 * 17 15 13 20 20 H 1.48499 * 109.46969 * 329.99725 * 17 15 13 21 21 O 1.33668 * 125.42298 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47423 * 90.01678 * 1 2 3 23 23 H 1.08995 * 109.47599 * 210.02356 * 1 2 3 24 24 H 1.09000 * 109.47115 * 330.02201 * 1 2 3 25 25 H 1.07997 * 126.27618 * 179.97438 * 4 3 2 26 26 H 1.08999 * 109.46698 * 84.40972 * 9 8 6 27 27 H 1.08998 * 109.47025 * 204.40596 * 9 8 6 28 28 H 1.08995 * 109.47302 * 324.40765 * 9 8 6 29 29 H 1.09007 * 109.46846 * 60.00111 * 11 10 8 30 30 H 1.09000 * 109.47169 * 179.97438 * 11 10 8 31 31 H 1.08992 * 109.47358 * 300.00076 * 11 10 8 32 32 H 1.09001 * 109.47347 * 60.00270 * 12 10 8 33 33 H 1.09006 * 109.47371 * 179.97438 * 12 10 8 34 34 H 1.08998 * 109.47524 * 299.99790 * 12 10 8 35 35 H 0.97001 * 120.00080 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6863 0.0006 5 6 3.5708 -0.6770 0.0003 6 6 4.7635 -1.5314 -0.0046 7 8 5.8680 -1.0339 -0.1199 8 7 4.6358 -2.8675 0.1185 9 6 3.3034 -3.4750 0.1623 10 6 5.8293 -3.7122 0.2087 11 6 5.4109 -5.1593 0.4766 12 6 6.6050 -3.6411 -1.1082 13 6 6.7051 -3.2259 1.3345 14 1 6.3994 -2.3773 1.9285 15 6 7.8967 -3.8642 1.6062 16 7 8.2686 -4.8978 0.8832 17 14 8.9819 -3.2618 3.0021 18 1 8.6074 -3.9610 4.2574 19 1 10.4038 -3.5467 2.6821 20 1 8.7973 -1.7986 3.1765 21 8 2.2817 -1.0893 0.0005 22 1 -0.3634 -0.0003 -1.0276 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 4.4056 1.3407 0.0003 26 1 2.9411 -3.6298 -0.8540 27 1 3.3579 -4.4335 0.6785 28 1 2.6199 -2.8139 0.6949 29 1 4.7775 -5.5111 -0.3378 30 1 6.2990 -5.7878 0.5432 31 1 4.8583 -5.2100 1.4147 32 1 6.9032 -2.6101 -1.2991 33 1 7.4934 -4.2692 -1.0410 34 1 5.9717 -3.9929 -1.9225 35 1 9.1071 -5.3467 1.0740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259750657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:47 Heat of formation + Delta-G solvation = -17.890251 kcal Electronic energy + Delta-G solvation = -19323.633989 eV Core-core repulsion = 16323.577717 eV Total energy + Delta-G solvation = -3000.056273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.45775 -40.78687 -37.65148 -36.09545 -34.94141 -33.19064 -32.02775 -29.04442 -28.66788 -27.37085 -26.40110 -24.69973 -22.85509 -22.20115 -20.50945 -18.80885 -18.10102 -17.91636 -17.26790 -17.09936 -16.12034 -15.91067 -15.19937 -14.89290 -14.76569 -14.58703 -13.95677 -13.81353 -13.47824 -13.36305 -13.31757 -13.11619 -12.83282 -12.70326 -12.51643 -12.44315 -12.30727 -12.12913 -11.85645 -11.69368 -11.23359 -10.78685 -10.38503 -10.00692 -9.32445 -8.07560 -6.18265 -0.15677 1.36817 1.37973 1.39587 1.40456 1.50400 2.15027 2.32227 2.47533 3.03199 3.17010 3.68368 3.88146 4.27869 4.39060 4.44644 4.60536 4.68142 4.69526 4.72141 4.80593 4.86233 4.95823 4.97749 5.00592 5.19097 5.33250 5.45544 5.61080 5.66109 5.89973 6.12569 6.27648 6.47496 6.68759 6.83480 7.22731 7.50088 8.92809 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031530 B = 0.006626 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.819181 B = 4224.947041 C = 4618.818010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.212 3.788 3 N -0.515 5.515 4 C 0.038 3.962 5 C -0.115 4.115 6 C 0.585 3.415 7 O -0.546 6.546 8 N -0.591 5.591 9 C 0.066 3.934 10 C 0.284 3.716 11 C -0.128 4.128 12 C -0.136 4.136 13 C -0.510 4.510 14 H 0.032 0.968 15 C 0.026 3.974 16 N -0.903 5.903 17 Si 0.947 3.053 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.289 1.289 21 O -0.181 6.181 22 H 0.119 0.881 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.196 0.804 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 3.429 -1.773 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.007 3.993 3 N -0.244 5.244 4 C -0.104 4.104 5 C -0.170 4.170 6 C 0.371 3.629 7 O -0.426 6.426 8 N -0.322 5.322 9 C -0.075 4.075 10 C 0.202 3.798 11 C -0.186 4.186 12 C -0.195 4.195 13 C -0.549 4.549 14 H 0.050 0.950 15 C -0.173 4.173 16 N -0.543 5.543 17 Si 0.774 3.226 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.215 1.215 21 O -0.069 6.069 22 H 0.137 0.863 23 H 0.133 0.867 24 H 0.135 0.865 25 H 0.213 0.787 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.206 4.036 -1.841 16.802 hybrid contribution 1.449 -0.186 0.666 1.606 sum -14.757 3.850 -1.175 15.296 Atomic orbital electron populations 1.20727 0.76813 1.07156 1.06829 1.27918 0.98605 0.78306 0.94465 1.70440 1.01592 1.31064 1.21312 1.23655 0.95789 0.92164 0.98810 1.23226 0.82604 0.95689 1.15522 1.16803 0.85454 0.82294 0.78304 1.90831 1.25567 1.74291 1.51896 1.48355 1.09280 1.05410 1.69115 1.22185 0.82297 1.00463 1.02596 1.18239 0.80631 0.87696 0.93252 1.21912 1.01365 0.96578 0.98741 1.21967 1.01382 1.00089 0.96012 1.21270 1.05296 1.13543 1.14793 0.95005 1.25339 0.98145 0.95259 0.98541 1.69853 1.23146 1.21240 1.40027 0.85728 0.78582 0.77936 0.80353 1.19539 1.20403 1.21451 1.84687 1.15634 1.37037 1.69522 0.86328 0.86747 0.86545 0.78735 0.91688 0.89027 0.90186 0.93516 0.90553 0.93860 0.95812 0.90690 0.95570 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.23 0.75 0.14 16 2 C 0.21 5.10 8.32 88.29 0.73 5.83 16 3 N -0.51 -15.34 11.26 -302.88 -3.41 -18.75 16 4 C 0.04 1.31 11.67 83.97 0.98 2.29 16 5 C -0.12 -4.25 6.80 24.05 0.16 -4.08 16 6 C 0.59 26.62 6.86 86.46 0.59 27.21 16 7 O -0.55 -29.20 14.02 -4.30 -0.06 -29.26 16 8 N -0.59 -25.68 2.82 -808.06 -2.28 -27.96 16 9 C 0.07 2.12 9.04 127.77 1.15 3.28 16 10 C 0.28 14.03 0.76 2.86 0.00 14.03 16 11 C -0.13 -5.61 6.91 71.98 0.50 -5.12 16 12 C -0.14 -6.93 8.25 71.98 0.59 -6.34 16 13 C -0.51 -28.78 6.93 25.60 0.18 -28.60 16 14 H 0.03 1.92 7.20 -2.91 -0.02 1.90 16 15 C 0.03 1.46 5.15 84.66 0.44 1.90 16 16 N -0.90 -49.61 9.35 21.45 0.20 -49.41 16 17 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 21 O -0.18 -5.29 7.46 -7.07 -0.05 -5.35 16 22 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.09 2.76 5.45 -2.39 -0.01 2.74 16 28 H 0.08 2.33 5.31 -2.39 -0.01 2.32 16 29 H 0.05 1.74 7.53 -2.38 -0.02 1.72 16 30 H 0.08 3.74 6.10 -2.39 -0.01 3.72 16 31 H 0.04 1.79 7.20 -2.39 -0.02 1.77 16 32 H 0.02 1.28 6.42 -2.39 -0.02 1.26 16 33 H 0.07 4.08 6.04 -2.38 -0.01 4.07 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -69.73 285.30 3.61 -66.12 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.10 Total: 6.74 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 6.08 Total: 10.54 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -5.48 Total: -96.11 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.11 Total: -34.61 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.73 3.61 -66.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.230 kcal (2) G-P(sol) polarization free energy of solvation -69.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds