Wall clock time and date at job start Mon Mar 30 2020 03:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35444 * 126.77727 * 2 1 4 4 C 1.41377 * 103.98620 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.80511 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47003 * 35.00187 * 5 4 3 7 7 C 1.50701 * 109.47612 * 275.00622 * 5 4 3 8 8 H 1.08002 * 119.99385 * 304.46031 * 7 5 4 9 9 C 1.37876 * 120.00770 * 124.46104 * 7 5 4 10 10 N 1.31510 * 119.99594 * 4.76025 * 9 7 5 11 11 Si 1.86798 * 120.00357 * 184.75763 * 9 7 5 12 12 H 1.48501 * 109.46811 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46945 * 119.99933 * 11 9 7 14 14 H 1.48494 * 109.47137 * 240.00101 * 11 9 7 15 15 N 1.46895 * 109.47362 * 154.99876 * 5 4 3 16 16 C 1.47019 * 111.00164 * 192.58041 * 15 5 4 17 17 C 1.53095 * 109.26018 * 177.61005 * 16 15 5 18 18 O 1.43020 * 109.29721 * 56.82316 * 17 16 15 19 19 C 1.43015 * 113.73580 * 301.40717 * 18 17 16 20 20 C 1.47019 * 111.00031 * 68.94788 * 15 5 4 21 21 N 1.30168 * 106.39803 * 0.26452 * 4 3 2 22 22 O 1.20924 * 111.60476 * 359.53208 * 21 4 3 23 23 H 1.09000 * 109.47247 * 89.99984 * 1 2 3 24 24 H 1.09004 * 109.46900 * 209.99757 * 1 2 3 25 25 H 1.08995 * 109.46749 * 329.99517 * 1 2 3 26 26 H 1.08001 * 128.00945 * 359.97438 * 3 2 1 27 27 H 0.97004 * 120.00146 * 180.02562 * 10 9 7 28 28 H 1.08993 * 109.50966 * 57.67354 * 16 15 5 29 29 H 1.08996 * 109.53948 * 297.56579 * 16 15 5 30 30 H 1.08996 * 109.50896 * 176.78076 * 17 16 15 31 31 H 1.09001 * 109.50503 * 296.87464 * 17 16 15 32 32 H 1.09003 * 109.46915 * 298.65577 * 19 18 17 33 33 H 1.09004 * 109.54250 * 178.57186 * 19 18 17 34 34 H 1.09001 * 109.50230 * 302.32674 * 20 15 5 35 35 H 1.09003 * 109.50768 * 62.45661 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0014 6 1 4.8087 2.2099 0.5880 7 6 5.2910 1.6609 -1.4170 8 1 5.3740 0.8883 -2.1671 9 6 5.5233 2.9773 -1.7546 10 7 5.5144 3.9062 -0.8238 11 14 5.8509 3.4414 -3.5342 12 1 5.8063 2.2217 -4.3800 13 1 4.8147 4.4005 -3.9943 14 1 7.1913 4.0711 -3.6428 15 7 5.9790 0.4653 0.5835 16 6 7.1790 1.2631 0.8749 17 6 8.2314 0.3693 1.5361 18 8 8.5141 -0.7409 0.6798 19 6 7.3675 -1.5394 0.3750 20 6 6.3063 -0.6649 -0.2980 21 7 3.4764 -0.7564 -0.0067 22 8 2.3096 -1.0737 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8899 0.5139 26 1 2.0345 2.1270 -0.0004 27 1 5.6776 4.8325 -1.0613 28 1 6.9188 2.0789 1.5492 29 1 7.5794 1.6715 -0.0530 30 1 9.1435 0.9425 1.7019 31 1 7.8517 0.0050 2.4907 32 1 6.9624 -1.9597 1.2956 33 1 7.6542 -2.3470 -0.2986 34 1 5.4090 -1.2564 -0.4798 35 1 6.6926 -0.2879 -1.2451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259771258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:00 Heat of formation + Delta-G solvation = 22.644255 kcal Electronic energy + Delta-G solvation = -19401.753127 eV Core-core repulsion = 16403.454562 eV Total energy + Delta-G solvation = -2998.298565 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.95966 -38.68705 -35.72538 -33.18670 -32.42947 -32.25254 -30.30747 -28.11753 -27.18557 -25.21093 -23.37690 -23.07348 -21.85134 -19.62383 -18.82287 -16.92279 -16.57892 -16.25751 -15.58506 -15.27126 -14.70429 -14.24352 -13.98882 -13.75844 -13.29717 -13.23592 -12.99037 -12.82635 -12.21443 -12.08761 -11.64648 -11.31836 -11.08031 -10.94758 -10.72902 -10.50208 -10.23872 -10.06973 -9.90469 -9.50824 -8.92276 -8.88027 -8.76283 -8.49178 -7.17534 -6.24257 -4.36972 2.25954 3.13986 3.24057 3.28079 3.37227 3.87666 4.25761 4.48038 4.86023 5.03764 5.27547 5.43479 5.60673 5.64480 5.73961 5.81763 5.89945 5.96863 6.02003 6.06567 6.11244 6.32533 6.36332 6.46032 6.54726 6.82199 6.96051 7.00777 7.06189 7.42261 7.63955 7.76843 7.91623 8.15469 8.32599 8.76940 9.27558 9.33251 10.76459 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.010830 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.163593 B = 2584.839576 C = 3996.626929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.066 4.066 3 C -0.220 4.220 4 C 0.079 3.921 5 C 0.258 3.742 6 H 0.099 0.901 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.079 3.921 10 N -0.882 5.882 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.281 1.281 15 N -0.533 5.533 16 C 0.037 3.963 17 C 0.065 3.935 18 O -0.395 6.395 19 C 0.066 3.934 20 C 0.018 3.982 21 N -0.379 5.379 22 O 0.069 5.931 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.160 0.840 27 H 0.267 0.733 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 -4.596 2.952 7.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.130 4.130 3 C -0.241 4.241 4 C -0.080 4.080 5 C 0.151 3.849 6 H 0.117 0.883 7 C -0.574 4.574 8 H 0.076 0.924 9 C -0.126 4.126 10 N -0.518 5.518 11 Si 0.720 3.280 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.207 1.207 15 N -0.257 5.257 16 C -0.091 4.091 17 C -0.012 4.012 18 O -0.314 6.314 19 C -0.011 4.011 20 C -0.111 4.111 21 N -0.089 5.089 22 O 0.010 5.990 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.178 0.822 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.824 -5.680 3.374 7.633 hybrid contribution -0.222 1.686 -1.748 2.439 sum -4.046 -3.994 1.627 5.913 Atomic orbital electron populations 1.20149 0.85286 1.03568 1.03151 1.24253 0.95740 0.87163 1.05858 1.22310 0.92040 1.00307 1.09492 1.24336 0.98411 0.88913 0.96349 1.18086 0.81123 0.90173 0.95531 0.88290 1.21398 1.47928 0.92981 0.95122 0.92367 1.24980 0.93648 0.96385 0.97615 1.69862 1.48020 1.01489 1.32467 0.86508 0.78045 0.78688 0.84725 1.19619 1.20619 1.20686 1.62691 1.08172 1.10194 1.44674 1.22355 0.90887 0.95384 1.00506 1.22683 0.98335 0.87625 0.92587 1.87863 1.33278 1.41260 1.69003 1.22656 0.86435 0.93039 0.98954 1.22729 0.98832 0.93833 0.95703 1.73706 0.95299 1.17222 1.22719 1.84757 1.12058 1.33159 1.69017 0.90364 0.90734 0.89850 0.82204 0.92336 0.90826 0.93042 0.89719 0.93572 0.93553 0.89933 0.89041 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.45 36.01 0.38 -0.34 16 2 C -0.07 -1.14 7.49 -35.30 -0.26 -1.40 16 3 C -0.22 -4.40 11.06 -39.39 -0.44 -4.84 16 4 C 0.08 1.83 6.10 -82.10 -0.50 1.33 16 5 C 0.26 6.36 2.53 -70.02 -0.18 6.18 16 6 H 0.10 2.65 6.80 -51.93 -0.35 2.30 16 7 C -0.53 -14.10 6.40 -34.44 -0.22 -14.32 16 8 H 0.06 1.61 6.90 -52.49 -0.36 1.25 16 9 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 10 N -0.88 -23.45 12.63 55.43 0.70 -22.75 16 11 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 N -0.53 -12.23 4.62 -229.12 -1.06 -13.29 16 16 C 0.04 0.81 5.44 -3.71 -0.02 0.79 16 17 C 0.06 1.20 7.01 37.21 0.26 1.46 16 18 O -0.40 -7.88 10.83 -35.23 -0.38 -8.26 16 19 C 0.07 1.25 7.01 37.21 0.26 1.52 16 20 C 0.02 0.39 4.85 -3.71 -0.02 0.37 16 21 N -0.38 -8.42 9.38 33.42 0.31 -8.11 16 22 O 0.07 1.36 11.20 17.16 0.19 1.55 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.16 3.00 8.06 -52.49 -0.42 2.57 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.07 1.60 8.06 -51.93 -0.42 1.18 16 29 H 0.05 1.26 7.59 -51.93 -0.39 0.87 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 2.07 5.48 -51.93 -0.28 1.78 16 35 H 0.05 1.13 6.54 -51.93 -0.34 0.79 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -28.88 288.03 -6.42 -35.30 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.67 Total: 2.82 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.84 Total: -7.28 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.05 Total: -44.15 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.19 Total: -6.71 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.88 -6.42 -35.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.944 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds