Wall clock time and date at job start Mon Mar 30 2020 03:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35444 * 126.77727 * 2 1 4 4 C 1.41377 * 103.98620 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.80511 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47003 * 35.00187 * 5 4 3 7 7 C 1.50701 * 109.47612 * 275.00622 * 5 4 3 8 8 H 1.08002 * 119.99385 * 304.46031 * 7 5 4 9 9 C 1.37876 * 120.00770 * 124.46104 * 7 5 4 10 10 N 1.31510 * 119.99594 * 4.76025 * 9 7 5 11 11 Si 1.86798 * 120.00357 * 184.75763 * 9 7 5 12 12 H 1.48501 * 109.46811 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46945 * 119.99933 * 11 9 7 14 14 H 1.48494 * 109.47137 * 240.00101 * 11 9 7 15 15 N 1.46895 * 109.47362 * 154.99876 * 5 4 3 16 16 C 1.47019 * 111.00164 * 192.58041 * 15 5 4 17 17 C 1.53095 * 109.26018 * 177.61005 * 16 15 5 18 18 O 1.43020 * 109.29721 * 56.82316 * 17 16 15 19 19 C 1.43015 * 113.73580 * 301.40717 * 18 17 16 20 20 C 1.47019 * 111.00031 * 68.94788 * 15 5 4 21 21 N 1.30168 * 106.39803 * 0.26452 * 4 3 2 22 22 O 1.20924 * 111.60476 * 359.53208 * 21 4 3 23 23 H 1.09000 * 109.47247 * 89.99984 * 1 2 3 24 24 H 1.09004 * 109.46900 * 209.99757 * 1 2 3 25 25 H 1.08995 * 109.46749 * 329.99517 * 1 2 3 26 26 H 1.08001 * 128.00945 * 359.97438 * 3 2 1 27 27 H 0.97004 * 120.00146 * 180.02562 * 10 9 7 28 28 H 1.08993 * 109.50966 * 57.67354 * 16 15 5 29 29 H 1.08996 * 109.53948 * 297.56579 * 16 15 5 30 30 H 1.08996 * 109.50896 * 176.78076 * 17 16 15 31 31 H 1.09001 * 109.50503 * 296.87464 * 17 16 15 32 32 H 1.09003 * 109.46915 * 298.65577 * 19 18 17 33 33 H 1.09004 * 109.54250 * 178.57186 * 19 18 17 34 34 H 1.09001 * 109.50230 * 302.32674 * 20 15 5 35 35 H 1.09003 * 109.50768 * 62.45661 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0014 6 1 4.8087 2.2099 0.5880 7 6 5.2910 1.6609 -1.4170 8 1 5.3740 0.8883 -2.1671 9 6 5.5233 2.9773 -1.7546 10 7 5.5144 3.9062 -0.8238 11 14 5.8509 3.4414 -3.5342 12 1 5.8063 2.2217 -4.3800 13 1 4.8147 4.4005 -3.9943 14 1 7.1913 4.0711 -3.6428 15 7 5.9790 0.4653 0.5835 16 6 7.1790 1.2631 0.8749 17 6 8.2314 0.3693 1.5361 18 8 8.5141 -0.7409 0.6798 19 6 7.3675 -1.5394 0.3750 20 6 6.3063 -0.6649 -0.2980 21 7 3.4764 -0.7564 -0.0067 22 8 2.3096 -1.0737 -0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8899 0.5139 26 1 2.0345 2.1270 -0.0004 27 1 5.6776 4.8325 -1.0613 28 1 6.9188 2.0789 1.5492 29 1 7.5794 1.6715 -0.0530 30 1 9.1435 0.9425 1.7019 31 1 7.8517 0.0050 2.4907 32 1 6.9624 -1.9597 1.2956 33 1 7.6542 -2.3470 -0.2986 34 1 5.4090 -1.2564 -0.4798 35 1 6.6926 -0.2879 -1.2451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259771258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:00 Heat of formation + Delta-G solvation = 2.774031 kcal Electronic energy + Delta-G solvation = -19402.614764 eV Core-core repulsion = 16403.454562 eV Total energy + Delta-G solvation = -2999.160202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.58979 -40.36739 -37.47094 -34.67201 -34.41498 -33.76247 -31.94434 -29.94993 -28.41830 -27.08925 -25.11096 -24.76853 -23.48834 -21.28539 -20.51285 -18.72837 -18.23509 -17.99267 -17.23318 -16.88124 -16.55623 -15.88248 -15.70112 -15.45170 -14.92888 -14.78165 -14.36107 -13.97737 -13.83265 -13.65030 -13.20640 -13.02703 -12.93794 -12.67395 -12.39189 -12.18437 -12.06869 -11.79836 -11.67111 -11.29905 -10.80634 -10.61467 -10.49308 -9.99762 -9.08129 -8.24058 -6.43942 0.79460 1.28340 1.32582 1.42542 1.63622 2.31419 2.51611 2.90839 2.98626 3.30112 3.74343 3.98311 4.12520 4.29367 4.32503 4.39123 4.47004 4.49640 4.63258 4.71977 4.80002 4.80689 4.81935 4.98459 5.06783 5.10368 5.16306 5.25158 5.38492 5.49892 5.61563 5.94487 6.20388 6.28811 6.47654 6.72469 7.25838 7.70711 8.74943 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.010830 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.163593 B = 2584.839576 C = 3996.626929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.036 4.036 3 C -0.251 4.251 4 C 0.047 3.953 5 C 0.263 3.737 6 H 0.070 0.930 7 C -0.542 4.542 8 H 0.036 0.964 9 C 0.041 3.959 10 N -0.902 5.902 11 Si 0.947 3.053 12 H -0.279 1.279 13 H -0.270 1.270 14 H -0.277 1.277 15 N -0.533 5.533 16 C 0.042 3.958 17 C 0.071 3.929 18 O -0.403 6.403 19 C 0.072 3.928 20 C 0.024 3.976 21 N -0.396 5.396 22 O 0.074 5.926 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.166 0.834 27 H 0.270 0.730 28 H 0.067 0.933 29 H 0.016 0.984 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 -5.452 3.166 8.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.100 4.100 3 C -0.273 4.273 4 C -0.111 4.111 5 C 0.156 3.844 6 H 0.088 0.912 7 C -0.582 4.582 8 H 0.054 0.946 9 C -0.162 4.162 10 N -0.539 5.539 11 Si 0.773 3.227 12 H -0.204 1.204 13 H -0.195 1.195 14 H -0.202 1.202 15 N -0.257 5.257 16 C -0.087 4.087 17 C -0.006 4.006 18 O -0.322 6.322 19 C -0.005 4.005 20 C -0.105 4.105 21 N -0.106 5.106 22 O 0.013 5.987 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.183 0.817 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -4.849 -6.534 3.594 8.895 hybrid contribution -0.003 1.910 -1.785 2.615 sum -4.852 -4.624 1.808 6.943 Atomic orbital electron populations 1.20488 0.80471 1.05891 1.05138 1.25169 0.97893 0.85163 1.01765 1.22468 0.91447 1.01544 1.11818 1.24276 0.98861 0.89717 0.98277 1.17799 0.82654 0.89873 0.94087 0.91161 1.21381 1.48525 0.92764 0.95560 0.94566 1.25557 0.93546 0.96262 1.00796 1.69938 1.48544 1.01706 1.33733 0.85682 0.78232 0.78109 0.80726 1.20367 1.19471 1.20245 1.62720 1.08305 1.10304 1.44419 1.22346 0.91345 0.96026 0.98991 1.22753 0.98439 0.86983 0.92399 1.87860 1.33535 1.41487 1.69328 1.22706 0.85319 0.92729 0.99749 1.22684 0.99480 0.93757 0.94595 1.73661 0.96717 1.16837 1.23384 1.84706 1.11640 1.33918 1.68407 0.88281 0.88218 0.87715 0.81675 0.92059 0.91445 0.96550 0.86969 0.91918 0.92343 0.87307 0.89717 0.96606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.45 71.24 0.74 -0.42 16 2 C -0.04 -1.16 7.49 25.04 0.19 -0.97 16 3 C -0.25 -10.04 11.06 22.40 0.25 -9.79 16 4 C 0.05 2.24 6.10 43.58 0.27 2.50 16 5 C 0.26 13.54 2.53 43.42 0.11 13.65 16 6 H 0.07 3.97 6.80 -2.38 -0.02 3.95 16 7 C -0.54 -29.81 6.40 25.60 0.16 -29.64 16 8 H 0.04 2.11 6.90 -2.91 -0.02 2.09 16 9 C 0.04 2.22 5.45 84.65 0.46 2.69 16 10 N -0.90 -49.28 12.63 21.45 0.27 -49.01 16 11 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 N -0.53 -25.15 4.62 -878.79 -4.06 -29.21 16 16 C 0.04 1.86 5.44 86.31 0.47 2.33 16 17 C 0.07 2.54 7.01 72.01 0.50 3.05 16 18 O -0.40 -15.51 10.83 -148.98 -1.61 -17.12 16 19 C 0.07 2.64 7.01 72.01 0.50 3.14 16 20 C 0.02 1.06 4.85 86.31 0.42 1.48 16 21 N -0.40 -17.69 9.38 -49.57 -0.46 -18.16 16 22 O 0.07 2.81 11.20 71.57 0.80 3.61 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.17 6.25 8.06 -2.91 -0.02 6.23 16 27 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.07 3.02 8.06 -2.39 -0.02 3.01 16 29 H 0.02 0.83 7.59 -2.39 -0.02 0.81 16 30 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.08 3.91 5.48 -2.39 -0.01 3.89 16 35 H 0.02 0.79 6.54 -2.39 -0.02 0.78 16 Total: -1.00 -64.48 288.03 2.12 -62.36 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.09 Total: 14.25 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.08 Total: -11.99 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -4.26 Total: -96.38 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.81 Total: -13.51 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -64.48 2.12 -62.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259771258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.133 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds