Wall clock time and date at job start Mon Mar 30 2020 03:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46767 * 264.97341 * 7 6 5 9 9 C 1.50704 * 109.46767 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00234 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00057 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99897 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46742 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.46929 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00141 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00191 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47041 * 59.99753 * 18 16 14 20 20 H 1.48497 * 109.47117 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47141 * 300.00015 * 18 16 14 22 22 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 23 23 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 24 24 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 25 25 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.47578 * 24.97025 * 7 6 5 27 27 H 1.09002 * 109.47003 * 144.97536 * 7 6 5 28 28 H 1.08995 * 109.47650 * 299.99900 * 8 7 6 29 29 H 1.09002 * 109.47200 * 60.00316 * 8 7 6 30 30 H 0.96999 * 119.99609 * 0.02562 * 11 9 8 31 31 H 1.09005 * 109.46911 * 299.99759 * 12 11 9 32 32 H 1.09002 * 109.47235 * 59.99951 * 12 11 9 33 33 H 1.09005 * 109.47082 * 299.99484 * 13 12 11 34 34 H 1.08996 * 109.47519 * 59.99470 * 13 12 11 35 35 H 0.96997 * 119.99743 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 6 1.7082 -3.0507 -1.4243 9 6 1.3140 -4.5052 -1.4203 10 8 1.2403 -5.1107 -0.3721 11 7 1.0432 -5.1332 -2.5817 12 6 0.6594 -6.5470 -2.5778 13 6 0.4099 -7.0117 -4.0140 14 6 0.0145 -8.4659 -4.0100 15 1 -0.0519 -9.0049 -3.0765 16 6 -0.2627 -9.1084 -5.1981 17 7 -0.1824 -8.4519 -6.3348 18 14 -0.7521 -10.9110 -5.1931 19 1 -1.9913 -11.0853 -4.3935 20 1 -0.9955 -11.3617 -6.5870 21 1 0.3408 -11.7190 -4.5948 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5133 25 1 4.5339 -1.1535 0.0156 26 1 2.7614 -3.1796 0.4505 27 1 1.0497 -2.7144 0.5991 28 1 0.9059 -2.4576 -1.8631 29 1 2.6176 -2.9227 -2.0116 30 1 1.1024 -4.6491 -3.4201 31 1 1.4616 -7.1401 -2.1386 32 1 -0.2502 -6.6750 -1.9909 33 1 -0.3922 -6.4187 -4.4537 34 1 1.3197 -6.8838 -4.6006 35 1 -0.3770 -8.9039 -7.1707 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259806171.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:14 Heat of formation + Delta-G solvation = -4.333450 kcal Electronic energy + Delta-G solvation = -17445.265865 eV Core-core repulsion = 14445.797459 eV Total energy + Delta-G solvation = -2999.468406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.12559 -39.36107 -35.98854 -34.88227 -33.31834 -32.86487 -31.03228 -29.54114 -28.86846 -25.84192 -24.17610 -21.59053 -21.47408 -20.91876 -19.96863 -17.81052 -17.61140 -16.79103 -16.30059 -15.71590 -15.12771 -14.89967 -14.49813 -14.12409 -13.61664 -13.50690 -13.32419 -12.83382 -12.67677 -12.55929 -12.30609 -12.27549 -11.53809 -11.24440 -11.04663 -10.98259 -10.68451 -10.35478 -10.06316 -9.86978 -9.67720 -9.45699 -9.19460 -8.57649 -8.38643 -6.12017 -4.15131 1.28642 1.98076 2.95515 3.05533 3.29208 3.33236 3.35976 3.65553 3.98815 4.32152 4.39504 4.66165 4.82071 4.91359 5.17331 5.18248 5.24565 5.24977 5.28823 5.49266 5.50236 5.61252 5.81885 5.89617 6.05980 6.30652 6.31145 6.70154 6.87935 7.48067 7.58139 7.85816 7.97120 8.06573 8.24582 8.60489 8.90716 9.49849 10.99543 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.053181 B = 0.003046 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.374579 B = 9190.112891 C = 9244.654864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.020 3.980 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.059 4.059 6 C -0.195 4.195 7 C -0.026 4.026 8 C -0.137 4.137 9 C 0.504 3.496 10 O -0.553 6.553 11 N -0.723 5.723 12 C 0.121 3.879 13 C 0.013 3.987 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.217 0.783 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.398 0.602 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 16.102 9.914 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.140 4.140 6 C -0.199 4.199 7 C -0.065 4.065 8 C -0.177 4.177 9 C 0.290 3.710 10 O -0.432 6.432 11 N -0.372 5.372 12 C -0.002 4.002 13 C -0.025 4.025 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.233 0.767 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.007 16.946 10.455 20.531 hybrid contribution -0.213 -1.636 -0.642 1.770 sum 4.794 15.310 9.813 18.806 Atomic orbital electron populations 1.20201 0.85943 1.03865 1.03600 1.23575 0.99096 0.88465 1.02768 1.73841 0.89514 1.24298 1.19868 1.84806 1.21513 1.23133 1.67471 1.25850 1.00867 0.83505 1.03804 1.21388 0.92266 0.97785 1.08428 1.19614 1.03564 0.87147 0.96145 1.21651 1.03673 0.93846 0.98528 1.20536 0.77449 0.88839 0.84194 1.90677 1.53116 1.68029 1.31352 1.46365 1.68680 1.13789 1.08401 1.21725 0.99038 0.77940 1.01448 1.19319 0.97505 0.96742 0.88913 1.21020 1.46949 0.95158 0.93084 0.92301 1.24999 0.95282 0.98503 0.95484 1.69943 1.48953 1.36708 0.97709 0.86565 0.79197 0.84726 0.77011 1.20096 1.21224 1.20092 0.89993 0.89775 0.90606 0.76688 0.89603 0.89598 0.89001 0.88962 0.76856 0.92582 0.92574 0.95963 0.95962 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.39 36.01 0.37 -0.27 16 2 C 0.02 0.21 7.33 -82.10 -0.60 -0.39 16 3 N -0.37 -4.40 12.07 33.42 0.40 -4.00 16 4 O 0.10 1.00 11.20 17.17 0.19 1.19 16 5 C -0.06 -0.48 12.26 29.74 0.36 -0.12 16 6 C -0.19 -1.87 5.58 -104.42 -0.58 -2.45 16 7 C -0.03 -0.27 5.00 -27.88 -0.14 -0.41 16 8 C -0.14 -1.43 5.68 -27.88 -0.16 -1.59 16 9 C 0.50 7.76 7.83 -10.98 -0.09 7.67 16 10 O -0.55 -10.57 15.98 5.56 0.09 -10.48 16 11 N -0.72 -11.89 5.56 -60.29 -0.33 -12.22 16 12 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 14 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 18 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.62 7.80 -51.93 -0.41 0.22 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.22 0.92 8.06 -52.48 -0.42 0.50 16 26 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 27 H 0.09 0.92 7.76 -51.93 -0.40 0.52 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.40 5.61 8.47 -40.82 -0.35 5.27 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -32.59 309.66 -5.59 -38.18 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.92 Total: -0.28 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.40 Total: -8.05 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.80 Total: -41.38 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.28 Total: -9.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.59 -5.59 -38.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259806171.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.848 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds