Wall clock time and date at job start Mon Mar 30 2020 03:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46767 * 264.97341 * 7 6 5 9 9 C 1.50704 * 109.46767 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00234 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00057 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99897 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46742 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.46929 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00141 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00191 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47041 * 59.99753 * 18 16 14 20 20 H 1.48497 * 109.47117 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47141 * 300.00015 * 18 16 14 22 22 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 23 23 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 24 24 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 25 25 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.47578 * 24.97025 * 7 6 5 27 27 H 1.09002 * 109.47003 * 144.97536 * 7 6 5 28 28 H 1.08995 * 109.47650 * 299.99900 * 8 7 6 29 29 H 1.09002 * 109.47200 * 60.00316 * 8 7 6 30 30 H 0.96999 * 119.99609 * 0.02562 * 11 9 8 31 31 H 1.09005 * 109.46911 * 299.99759 * 12 11 9 32 32 H 1.09002 * 109.47235 * 59.99951 * 12 11 9 33 33 H 1.09005 * 109.47082 * 299.99484 * 13 12 11 34 34 H 1.08996 * 109.47519 * 59.99470 * 13 12 11 35 35 H 0.96997 * 119.99743 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 6 1.7082 -3.0507 -1.4243 9 6 1.3140 -4.5052 -1.4203 10 8 1.2403 -5.1107 -0.3721 11 7 1.0432 -5.1332 -2.5817 12 6 0.6594 -6.5470 -2.5778 13 6 0.4099 -7.0117 -4.0140 14 6 0.0145 -8.4659 -4.0100 15 1 -0.0519 -9.0049 -3.0765 16 6 -0.2627 -9.1084 -5.1981 17 7 -0.1824 -8.4519 -6.3348 18 14 -0.7521 -10.9110 -5.1931 19 1 -1.9913 -11.0853 -4.3935 20 1 -0.9955 -11.3617 -6.5870 21 1 0.3408 -11.7190 -4.5948 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5133 25 1 4.5339 -1.1535 0.0156 26 1 2.7614 -3.1796 0.4505 27 1 1.0497 -2.7144 0.5991 28 1 0.9059 -2.4576 -1.8631 29 1 2.6176 -2.9227 -2.0116 30 1 1.1024 -4.6491 -3.4201 31 1 1.4616 -7.1401 -2.1386 32 1 -0.2502 -6.6750 -1.9909 33 1 -0.3922 -6.4187 -4.4537 34 1 1.3197 -6.8838 -4.6006 35 1 -0.3770 -8.9039 -7.1707 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259806171.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:13 Heat of formation + Delta-G solvation = -26.008454 kcal Electronic energy + Delta-G solvation = -17446.205764 eV Core-core repulsion = 14445.797459 eV Total energy + Delta-G solvation = -3000.408304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.87890 -40.66561 -36.91501 -36.39545 -34.79430 -34.11822 -32.11765 -31.09241 -29.56618 -27.26852 -25.63202 -22.94379 -22.27527 -22.13451 -21.19584 -18.69183 -18.52092 -18.31524 -17.76106 -16.82575 -16.63019 -16.41614 -15.77667 -15.35014 -14.77593 -14.45310 -14.29844 -14.18452 -13.69241 -13.61787 -13.28079 -13.23546 -13.17800 -12.90891 -12.53495 -12.33190 -12.19324 -11.76240 -11.65369 -11.46958 -10.89678 -10.73950 -10.59654 -10.29136 -9.96788 -8.23947 -6.34420 0.60433 1.23558 1.42311 1.44222 1.52305 1.72168 2.29437 2.42444 2.53220 3.10870 3.27214 3.64390 3.79120 4.00414 4.10792 4.34442 4.41552 4.52604 4.54630 4.61292 4.66440 4.69968 4.84207 4.87878 4.98542 5.09972 5.12108 5.30649 5.35622 5.52172 5.59652 5.79934 6.17115 6.68414 6.79187 7.34255 7.35044 7.35770 8.87610 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.053181 B = 0.003046 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.374579 B = 9190.112891 C = 9244.654864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.011 3.989 3 N -0.401 5.401 4 O 0.086 5.914 5 C -0.040 4.040 6 C -0.209 4.209 7 C -0.018 4.018 8 C -0.123 4.123 9 C 0.505 3.495 10 O -0.591 6.591 11 N -0.720 5.720 12 C 0.140 3.860 13 C 0.022 3.978 14 C -0.549 4.549 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.268 1.268 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.255 0.745 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.411 0.589 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 16.164 10.108 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.147 4.147 3 N -0.109 5.109 4 O 0.024 5.976 5 C -0.121 4.121 6 C -0.213 4.213 7 C -0.056 4.056 8 C -0.163 4.163 9 C 0.293 3.707 10 O -0.472 6.472 11 N -0.371 5.371 12 C 0.016 3.984 13 C -0.015 4.015 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.193 1.193 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.271 0.729 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.247 0.753 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.537 17.040 10.647 20.842 hybrid contribution -0.343 -1.627 -0.682 1.797 sum 5.194 15.413 9.966 19.075 Atomic orbital electron populations 1.20295 0.84880 1.04312 1.04314 1.23985 1.00082 0.88605 1.02077 1.73848 0.90154 1.25291 1.21639 1.84776 1.21072 1.24248 1.67549 1.26563 1.01897 0.82639 1.00985 1.21328 0.92768 0.97155 1.10071 1.19476 1.03149 0.87436 0.95559 1.21641 1.05311 0.89815 0.99541 1.21362 0.75924 0.90526 0.82848 1.90665 1.54573 1.69374 1.32615 1.46208 1.68942 1.12174 1.09802 1.21190 0.98204 0.80458 0.98573 1.19131 0.96099 0.95498 0.90791 1.21470 1.47134 0.96824 0.93301 0.92326 1.25866 0.95136 1.03057 0.95089 1.70047 1.49735 1.38538 0.98295 0.85517 0.79107 0.79281 0.77275 1.19360 1.20631 1.19313 0.89084 0.89129 0.90383 0.72926 0.89631 0.90634 0.87160 0.86455 0.75334 0.93624 0.93700 0.97373 0.97311 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.39 71.24 0.74 -0.49 16 2 C 0.01 0.22 7.33 43.58 0.32 0.54 16 3 N -0.40 -9.14 12.07 -49.55 -0.60 -9.74 16 4 O 0.09 1.65 11.20 71.60 0.80 2.45 16 5 C -0.04 -0.54 12.26 67.17 0.82 0.28 16 6 C -0.21 -3.56 5.58 -19.74 -0.11 -3.67 16 7 C -0.02 -0.32 5.00 29.85 0.15 -0.17 16 8 C -0.12 -2.26 5.68 29.85 0.17 -2.09 16 9 C 0.51 14.82 7.83 87.66 0.69 15.50 16 10 O -0.59 -22.20 15.98 -3.03 -0.05 -22.25 16 11 N -0.72 -23.01 5.56 -463.04 -2.57 -25.58 16 12 C 0.14 5.80 5.61 86.38 0.48 6.28 16 13 C 0.02 1.10 5.09 29.85 0.15 1.25 16 14 C -0.55 -30.29 9.11 25.60 0.23 -30.06 16 15 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 16 C 0.01 0.41 5.46 84.66 0.46 0.87 16 17 N -0.93 -53.80 13.29 21.45 0.28 -53.52 16 18 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.09 1.23 7.80 -2.39 -0.02 1.21 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.25 1.16 8.06 -2.91 -0.02 1.13 16 26 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 27 H 0.08 1.53 7.76 -2.39 -0.02 1.51 16 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.41 11.03 8.47 -92.71 -0.79 10.24 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -70.10 309.66 4.31 -65.79 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.31 Total: 9.49 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.11 Total: -11.75 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -2.89 Total: -88.84 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.75 Total: -19.80 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -70.10 4.31 -65.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259806171.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.778 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds