Wall clock time and date at job start Mon Mar 30 2020 03:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46767 * 264.97341 * 7 6 5 9 9 C 1.50704 * 109.46767 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00234 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00057 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99897 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47126 * 324.99868 * 12 11 9 14 14 C 1.52998 * 109.47296 * 85.00013 * 12 11 9 15 15 C 1.50703 * 109.46927 * 204.99749 * 12 11 9 16 16 H 1.08002 * 119.99790 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99949 * 179.97438 * 15 12 11 18 18 N 1.31511 * 119.99874 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99792 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47059 * 60.00103 * 19 17 15 21 21 H 1.48498 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47293 * 300.00213 * 19 17 15 23 23 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 24 24 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 25 25 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 26 26 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47578 * 24.97025 * 7 6 5 28 28 H 1.09002 * 109.47003 * 144.97536 * 7 6 5 29 29 H 1.08995 * 109.47650 * 299.99900 * 8 7 6 30 30 H 1.09002 * 109.47200 * 60.00316 * 8 7 6 31 31 H 0.96999 * 119.99609 * 0.02562 * 11 9 8 32 32 H 1.09000 * 109.47099 * 299.99535 * 14 12 11 33 33 H 1.09003 * 109.47444 * 59.99602 * 14 12 11 34 34 H 1.08995 * 109.47366 * 179.97438 * 14 12 11 35 35 H 0.96998 * 119.99634 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 6 1.7082 -3.0507 -1.4243 9 6 1.3140 -4.5052 -1.4203 10 8 1.2403 -5.1107 -0.3721 11 7 1.0432 -5.1332 -2.5817 12 6 0.6594 -6.5470 -2.5778 13 1 1.1990 -7.0678 -1.7868 14 6 -0.8460 -6.6662 -2.3319 15 6 1.0012 -7.1641 -3.9095 16 1 1.4590 -6.5632 -4.6814 17 6 0.7305 -8.4958 -4.1421 18 7 0.1735 -9.2275 -3.2019 19 14 1.1549 -9.2608 -5.7926 20 1 2.6160 -9.1447 -6.0309 21 1 0.7658 -10.6938 -5.7887 22 1 0.4197 -8.5516 -6.8706 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5133 26 1 4.5339 -1.1535 0.0156 27 1 2.7614 -3.1796 0.4505 28 1 1.0497 -2.7144 0.5991 29 1 0.9059 -2.4576 -1.8631 30 1 2.6176 -2.9227 -2.0116 31 1 1.1024 -4.6491 -3.4201 32 1 -1.0933 -6.2200 -1.3687 33 1 -1.3858 -6.1454 -3.1229 34 1 -1.1317 -7.7180 -2.3295 35 1 -0.0172 -10.1644 -3.3657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259809920.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:18 Heat of formation + Delta-G solvation = 2.356315 kcal Electronic energy + Delta-G solvation = -17975.789100 eV Core-core repulsion = 14976.610785 eV Total energy + Delta-G solvation = -2999.178316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.01770 -38.98661 -35.86257 -34.78341 -33.15073 -32.38666 -30.79021 -28.93057 -28.66310 -25.33576 -25.02643 -21.65358 -21.40185 -20.63846 -19.38468 -17.72910 -17.48962 -17.03969 -15.77070 -15.35432 -15.20059 -14.65294 -14.23402 -13.65400 -13.50255 -13.20050 -12.79755 -12.66387 -12.50811 -12.39918 -12.10483 -11.64862 -11.40207 -11.09723 -10.97273 -10.83759 -10.71580 -10.34511 -10.25127 -9.94779 -9.55700 -9.08066 -8.98179 -8.56540 -7.92727 -6.14037 -4.23591 1.39380 2.09576 3.16590 3.24024 3.29504 3.30413 3.38148 3.99912 4.16028 4.37539 4.43927 4.82728 5.03007 5.13992 5.18179 5.31564 5.34606 5.39224 5.46961 5.61070 5.73193 5.81088 5.96279 6.09230 6.23222 6.80604 6.94527 7.13402 7.44546 7.54100 7.67645 7.89622 8.13484 8.16512 8.65179 8.76016 9.11283 9.44206 10.91886 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.042790 B = 0.003831 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.199654 B = 7307.309589 C = 7519.006434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.061 4.061 6 C -0.191 4.191 7 C -0.027 4.027 8 C -0.137 4.137 9 C 0.500 3.500 10 O -0.558 6.558 11 N -0.710 5.710 12 C 0.263 3.737 13 H 0.048 0.952 14 C -0.146 4.146 15 C -0.535 4.535 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.216 0.784 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.389 0.611 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 15.299 3.729 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.143 4.143 6 C -0.195 4.195 7 C -0.065 4.065 8 C -0.177 4.177 9 C 0.285 3.715 10 O -0.437 6.437 11 N -0.357 5.357 12 C 0.161 3.839 13 H 0.066 0.934 14 C -0.205 4.205 15 C -0.574 4.574 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.233 0.767 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.221 0.779 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.032 15.954 4.499 16.851 hybrid contribution 0.244 -1.109 -1.396 1.800 sum 3.276 14.845 3.104 15.515 Atomic orbital electron populations 1.20193 0.85990 1.03822 1.03544 1.23571 0.99073 0.88506 1.02795 1.73824 0.89541 1.24328 1.20012 1.84792 1.21497 1.23185 1.67583 1.25843 1.00911 0.83427 1.04073 1.21445 0.92208 0.97928 1.07947 1.19624 1.03507 0.86870 0.96488 1.21656 1.03252 0.94740 0.98059 1.20414 0.77941 0.88455 0.84731 1.90656 1.53834 1.67843 1.31390 1.46548 1.67389 1.14496 1.07286 1.18736 0.92265 0.75072 0.97780 0.93385 1.22072 0.98317 1.03631 0.96496 1.21190 1.41821 0.95467 0.98885 0.92157 1.24888 0.94702 0.96902 0.97193 1.69891 1.41648 1.07742 1.32820 0.86508 0.78867 0.78202 0.83514 1.20171 1.21109 1.20166 0.90058 0.89732 0.90692 0.76705 0.89639 0.89670 0.89491 0.89396 0.77926 0.96668 0.95521 0.89181 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.39 36.01 0.37 -0.36 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 N -0.37 -4.80 12.07 33.42 0.40 -4.39 16 4 O 0.09 1.08 11.20 17.17 0.19 1.27 16 5 C -0.06 -0.58 12.26 29.74 0.36 -0.22 16 6 C -0.19 -2.13 5.58 -104.42 -0.58 -2.71 16 7 C -0.03 -0.32 5.00 -27.88 -0.14 -0.46 16 8 C -0.14 -1.77 5.68 -27.88 -0.16 -1.93 16 9 C 0.50 9.33 7.79 -10.98 -0.09 9.24 16 10 O -0.56 -12.64 15.64 5.56 0.09 -12.56 16 11 N -0.71 -14.25 5.07 -54.93 -0.28 -14.53 16 12 C 0.26 6.60 2.56 -69.08 -0.18 6.43 16 13 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 14 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 15 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.70 11.32 55.43 0.63 -24.08 16 19 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.22 1.22 8.06 -52.48 -0.42 0.80 16 27 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 28 H 0.08 1.10 7.76 -51.93 -0.40 0.69 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.39 6.71 8.54 -40.82 -0.35 6.36 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -31.46 304.84 -5.24 -36.70 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.79 Total: 3.88 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.06 Total: -6.28 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.75 Total: -43.00 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.28 Total: -11.28 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.46 -5.24 -36.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809920.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.058 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds