Wall clock time and date at job start Mon Mar 30 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35450 * 126.77573 * 2 1 4 4 C 1.41382 * 103.98724 * 180.09651 * 3 2 1 5 5 C 1.50698 * 126.80382 * 179.89091 * 4 3 2 6 6 C 1.50694 * 109.47166 * 124.70753 * 5 4 3 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72721 * 8 6 5 10 10 C 1.53005 * 109.47245 * 299.99863 * 9 8 6 11 11 C 1.52998 * 109.47649 * 59.99998 * 9 8 6 12 12 C 1.50698 * 109.47082 * 180.02562 * 9 8 6 13 13 H 1.08005 * 119.99736 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00453 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99720 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00263 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46927 * 89.99576 * 16 14 12 18 18 H 1.48494 * 109.46891 * 209.99448 * 16 14 12 19 19 H 1.48498 * 109.47123 * 329.99502 * 16 14 12 20 20 N 1.30178 * 106.39044 * 359.62386 * 4 3 2 21 21 O 1.20921 * 111.60707 * 0.24071 * 20 4 3 22 22 H 1.08998 * 109.46624 * 180.30469 * 1 2 3 23 23 H 1.08999 * 109.46949 * 300.30357 * 1 2 3 24 24 H 1.09002 * 109.46972 * 60.30050 * 1 2 3 25 25 H 1.08005 * 128.00854 * 359.96438 * 3 2 1 26 26 H 1.08998 * 109.46890 * 4.70743 * 5 4 3 27 27 H 1.09002 * 109.46875 * 244.70546 * 5 4 3 28 28 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 29 29 H 1.08996 * 109.47275 * 60.00014 * 10 9 8 30 30 H 1.08994 * 109.47273 * 180.02562 * 10 9 8 31 31 H 1.09006 * 109.46676 * 300.00483 * 10 9 8 32 32 H 1.08998 * 109.46893 * 59.99537 * 11 9 8 33 33 H 1.09003 * 109.47436 * 180.02562 * 11 9 8 34 34 H 1.09006 * 109.46641 * 299.99954 * 11 9 8 35 35 H 0.96993 * 120.00028 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9211 1.3001 -0.0056 6 6 5.7662 0.8575 1.1609 7 8 5.3536 0.0068 1.9206 8 7 6.9807 1.4071 1.3602 9 6 7.7998 0.9811 2.4976 10 6 7.0486 1.2622 3.8006 11 6 8.0860 -0.5178 2.3872 12 6 9.1000 1.7430 2.4936 13 1 9.2967 2.4713 1.7207 14 6 10.0389 1.5095 3.4759 15 7 9.7996 0.6222 4.4168 16 14 11.6510 2.4533 3.4705 17 1 11.4969 3.7007 4.2614 18 1 12.7179 1.6141 4.0724 19 1 12.0195 2.7956 2.0732 20 7 3.4764 -0.7563 0.0048 21 8 2.3095 -1.0736 0.0062 22 1 -0.3632 -1.0277 0.0055 23 1 -0.3633 0.5185 0.8873 24 1 -0.3633 0.5092 -0.8927 25 1 2.0345 2.1271 -0.0005 26 1 4.7162 2.3673 0.0784 27 1 5.4548 1.1046 -0.9357 28 1 7.3105 2.0877 0.7528 29 1 6.1080 0.7116 3.8038 30 1 7.6582 0.9457 4.6469 31 1 6.8447 2.3302 3.8793 32 1 8.6211 -0.7180 1.4589 33 1 8.6951 -0.8348 3.2338 34 1 7.1453 -1.0685 2.3904 35 1 10.4599 0.4582 5.1080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:30 Heat of formation + Delta-G solvation = -3.318688 kcal Electronic energy + Delta-G solvation = -18602.160083 eV Core-core repulsion = 15602.735681 eV Total energy + Delta-G solvation = -2999.424402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.84209 -40.74337 -37.32550 -35.49309 -34.29740 -34.19172 -32.04472 -29.67451 -28.51879 -27.66457 -27.33389 -24.11157 -23.10242 -21.10984 -20.29363 -18.90665 -18.47500 -18.10872 -17.27331 -16.99871 -16.10181 -15.95568 -15.29455 -14.78006 -14.47811 -14.34105 -13.98743 -13.90136 -13.86618 -13.44666 -13.32036 -13.10985 -12.90534 -12.88876 -12.42571 -12.32777 -12.08869 -11.94643 -11.77894 -11.14158 -10.95500 -10.52871 -10.28868 -10.15303 -9.65721 -8.08011 -6.28084 0.66130 1.31025 1.46331 1.47333 1.57033 1.88508 2.35828 2.40183 2.72853 3.17574 3.25010 3.64185 4.09070 4.19876 4.31952 4.39489 4.58141 4.67647 4.73042 4.79587 4.87179 4.96006 5.01213 5.09578 5.19962 5.26983 5.34141 5.52247 5.55313 5.73994 5.91412 5.94235 6.25242 6.75414 7.09061 7.39222 7.47824 7.65351 8.92961 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.058473 B = 0.004461 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.737186 B = 6274.809622 C = 6408.023201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.234 4.234 4 C 0.014 3.986 5 C -0.057 4.057 6 C 0.497 3.503 7 O -0.581 6.581 8 N -0.705 5.705 9 C 0.289 3.711 10 C -0.131 4.131 11 C -0.132 4.132 12 C -0.538 4.538 13 H 0.072 0.928 14 C 0.021 3.979 15 N -0.908 5.908 16 Si 0.968 3.032 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.264 1.264 20 N -0.388 5.388 21 O 0.083 5.917 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.204 0.796 26 H 0.150 0.850 27 H 0.127 0.873 28 H 0.404 0.596 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.477 5.229 -10.886 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C -0.255 4.255 4 C -0.144 4.144 5 C -0.097 4.097 6 C 0.283 3.717 7 O -0.461 6.461 8 N -0.355 5.355 9 C 0.205 3.795 10 C -0.190 4.190 11 C -0.191 4.191 12 C -0.577 4.577 13 H 0.090 0.910 14 C -0.180 4.180 15 N -0.546 5.546 16 Si 0.793 3.207 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.188 1.188 20 N -0.093 5.093 21 O 0.016 5.984 22 H 0.107 0.893 23 H 0.122 0.878 24 H 0.132 0.868 25 H 0.221 0.779 26 H 0.168 0.832 27 H 0.145 0.855 28 H 0.240 0.760 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.798 3.512 -10.177 18.300 hybrid contribution 0.988 1.059 0.207 1.463 sum -13.810 4.571 -9.970 17.636 Atomic orbital electron populations 1.20553 0.80635 1.05666 1.05751 1.25414 0.98225 0.85441 1.01399 1.22753 0.89646 1.02605 1.10486 1.23312 0.97811 0.89914 1.03389 1.20152 0.89445 1.01979 0.98162 1.20988 0.82320 0.81648 0.86731 1.90639 1.72872 1.33812 1.48784 1.46350 1.16873 1.41874 1.30415 1.17896 0.88176 0.91299 0.82164 1.21893 0.98150 0.97780 1.01135 1.21908 0.98461 0.98598 1.00093 1.21438 1.00881 1.22979 1.12358 0.90999 1.25661 1.01678 0.95863 0.94752 1.69996 1.36019 1.34010 1.14549 0.85410 0.78573 0.78142 0.78563 1.20161 1.21445 1.18817 1.73895 0.97463 1.18096 1.19834 1.84796 1.11322 1.34696 1.67614 0.89314 0.87796 0.86752 0.77902 0.83239 0.85479 0.76038 0.95928 0.91772 0.95565 0.96075 0.91699 0.96024 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.45 71.24 0.74 0.04 16 2 C -0.04 -0.91 7.49 25.04 0.19 -0.72 16 3 C -0.23 -5.29 11.05 22.40 0.25 -5.04 16 4 C 0.01 0.45 6.10 43.58 0.27 0.72 16 5 C -0.06 -1.59 6.30 29.10 0.18 -1.41 16 6 C 0.50 20.07 7.24 87.65 0.63 20.70 16 7 O -0.58 -29.24 11.80 -3.04 -0.04 -29.27 16 8 N -0.71 -29.10 5.10 -426.33 -2.17 -31.27 16 9 C 0.29 14.70 0.78 2.86 0.00 14.70 16 10 C -0.13 -6.94 8.18 71.98 0.59 -6.35 16 11 C -0.13 -7.16 8.18 71.98 0.59 -6.57 16 12 C -0.54 -27.90 8.18 25.60 0.21 -27.69 16 13 H 0.07 3.47 7.60 -2.91 -0.02 3.45 16 14 C 0.02 1.09 5.15 84.65 0.44 1.53 16 15 N -0.91 -50.89 9.35 21.45 0.20 -50.69 16 16 Si 0.97 41.64 29.54 68.60 2.03 43.67 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 N -0.39 -14.43 11.46 -49.54 -0.57 -15.00 16 21 O 0.08 2.59 11.20 71.67 0.80 3.39 16 22 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 26 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.40 13.76 8.32 -92.71 -0.77 12.99 16 29 H 0.02 1.20 6.18 -2.39 -0.01 1.19 16 30 H 0.06 3.67 6.07 -2.39 -0.01 3.66 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 3.78 6.07 -2.39 -0.01 3.76 16 34 H 0.02 1.19 6.16 -2.38 -0.01 1.17 16 35 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -74.14 292.61 4.68 -69.46 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.34 Total: 19.81 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 4.09 Total: -10.10 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -2.54 Total: -96.96 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: 0.77 Total: -25.88 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -74.14 4.68 -69.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.146 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds