Wall clock time and date at job start Mon Mar 30 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00321 * 2 1 4 4 O 1.21278 * 120.00355 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99532 * 0.28257 * 3 2 1 6 6 C 1.50697 * 109.46775 * 179.71939 * 5 3 2 7 7 C 1.41385 * 126.80112 * 124.70724 * 6 5 3 8 8 C 1.35454 * 103.98210 * 179.88461 * 7 6 5 9 9 O 1.34033 * 106.44709 * 0.37267 * 8 7 6 10 10 N 1.20919 * 111.57245 * 359.74810 * 9 8 7 11 11 C 1.46499 * 119.99856 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47175 * 354.61966 * 11 2 1 13 13 C 1.53001 * 109.47296 * 114.62501 * 11 2 1 14 14 C 1.50707 * 109.46760 * 234.62111 * 11 2 1 15 15 H 1.07993 * 120.00128 * 1.53664 * 14 11 2 16 16 C 1.37874 * 119.99779 * 181.52795 * 14 11 2 17 17 N 1.31516 * 120.00378 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00024 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47186 * 90.00115 * 18 16 14 20 20 H 1.48500 * 109.47289 * 210.00464 * 18 16 14 21 21 H 1.48504 * 109.46934 * 330.00391 * 18 16 14 22 22 H 1.09001 * 109.47247 * 90.89014 * 1 2 3 23 23 H 1.08998 * 109.47218 * 210.89185 * 1 2 3 24 24 H 1.08995 * 109.47022 * 330.89439 * 1 2 3 25 25 H 1.09001 * 109.47021 * 299.71652 * 5 3 2 26 26 H 1.08998 * 109.47228 * 59.71896 * 5 3 2 27 27 H 1.08000 * 128.00638 * 0.03015 * 7 6 5 28 28 H 1.08002 * 126.77384 * 180.09849 * 8 7 6 29 29 H 1.08999 * 109.47309 * 60.00821 * 12 11 2 30 30 H 1.09002 * 109.46977 * 179.97438 * 12 11 2 31 31 H 1.08992 * 109.47656 * 300.00461 * 12 11 2 32 32 H 1.09003 * 109.47258 * 60.00116 * 13 11 2 33 33 H 1.09009 * 109.46804 * 179.97438 * 13 11 2 34 34 H 1.08994 * 109.46997 * 299.99608 * 13 11 2 35 35 H 0.96999 * 120.00025 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0064 6 6 2.3647 3.6176 0.0120 7 6 2.4252 4.6848 -0.9134 8 6 3.4622 5.4387 -0.4764 9 8 3.9464 4.8237 0.6117 10 7 3.3262 3.8174 0.8666 11 6 2.1975 -1.2687 -0.0006 12 6 1.2087 -2.4285 0.1342 13 6 2.9730 -1.4094 -1.3119 14 6 3.1611 -1.2929 1.1579 15 1 3.2041 -0.4584 1.8420 16 6 3.9875 -2.3806 1.3446 17 7 3.9353 -3.3968 0.5114 18 14 5.1814 -2.4110 2.7810 19 1 4.5206 -3.0243 3.9610 20 1 6.3782 -3.2095 2.4131 21 1 5.5944 -1.0232 3.1107 22 1 -0.3634 -0.0160 -1.0275 23 1 -0.3633 -0.8819 0.5276 24 1 -0.3633 0.8979 0.4999 25 1 0.7587 2.5344 -0.8833 26 1 0.7588 2.5257 0.8967 27 1 1.7899 4.8598 -1.7691 28 1 3.8295 6.3523 -0.9199 29 1 0.5118 -2.4111 -0.7038 30 1 1.7537 -3.3725 0.1333 31 1 0.6562 -2.3284 1.0683 32 1 3.6775 -0.5831 -1.4079 33 1 3.5184 -2.3532 -1.3121 34 1 2.2761 -1.3919 -2.1498 35 1 4.5170 -4.1619 0.6425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259835339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:28 Heat of formation + Delta-G solvation = 42.167048 kcal Electronic energy + Delta-G solvation = -19251.658034 eV Core-core repulsion = 16254.206041 eV Total energy + Delta-G solvation = -2997.451993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.68946 -39.12597 -35.79117 -34.20429 -33.07070 -31.51181 -30.43360 -28.46030 -26.93068 -25.23849 -24.51157 -22.95060 -21.91588 -19.99019 -18.09987 -17.48223 -17.34552 -16.43076 -15.61056 -15.21978 -14.96903 -14.52976 -13.95466 -13.39041 -13.11759 -12.80662 -12.60038 -12.19514 -11.91443 -11.71388 -11.46275 -11.22092 -10.97062 -10.81212 -10.69891 -10.42816 -10.36421 -10.03206 -9.93159 -9.75569 -9.40559 -9.08130 -8.55299 -8.21473 -7.41178 -5.90978 -3.94340 1.74976 2.46276 3.38162 3.44487 3.48114 3.53394 3.60154 4.03598 4.40652 4.54547 4.75866 5.24236 5.32333 5.38433 5.40938 5.51204 5.56644 5.77091 5.88418 5.97824 6.15662 6.19707 6.61027 6.71848 6.78402 6.98243 7.24432 7.44681 7.59635 7.86067 7.96513 8.23826 8.33123 8.58362 8.67394 9.03542 9.28009 9.70172 11.11955 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.007397 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.390253 B = 3784.187834 C = 4573.415554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.506 3.494 4 O -0.506 6.506 5 C -0.067 4.067 6 C 0.030 3.970 7 C -0.230 4.230 8 C -0.074 4.074 9 O 0.103 5.897 10 N -0.331 5.331 11 C 0.292 3.708 12 C -0.139 4.139 13 C -0.146 4.146 14 C -0.484 4.484 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.168 0.832 28 H 0.212 0.788 29 H 0.016 0.984 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.003 0.997 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 12.916 -3.965 15.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C 0.290 3.710 4 O -0.380 6.380 5 C -0.108 4.108 6 C -0.130 4.130 7 C -0.252 4.252 8 C -0.155 4.155 9 O 0.033 5.967 10 N -0.031 5.031 11 C 0.211 3.789 12 C -0.197 4.197 13 C -0.204 4.204 14 C -0.523 4.523 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.210 1.210 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.061 0.939 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.186 0.814 28 H 0.228 0.772 29 H 0.035 0.965 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.022 0.978 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.779 12.032 -2.898 14.111 hybrid contribution 0.028 0.302 -0.148 0.337 sum -6.751 12.334 -3.046 14.387 Atomic orbital electron populations 1.21736 0.82395 1.02451 1.00479 1.48357 1.05344 1.07385 1.72486 1.19861 0.88278 0.84280 0.78580 1.90734 1.13277 1.86536 1.47419 1.20165 0.95948 0.90057 1.04623 1.23012 0.97643 0.98291 0.94068 1.22656 1.02594 0.96483 1.03438 1.25921 0.97049 1.01192 0.91367 1.84892 1.46503 1.27517 1.37812 1.73954 1.06347 1.00028 1.22772 1.18220 0.88868 0.77155 0.94703 1.22073 0.97754 1.02862 0.97013 1.22115 0.99434 1.04218 0.94656 1.21205 1.18857 1.02625 1.09648 0.92388 1.24773 0.96961 0.95532 0.96638 1.69775 1.39835 1.07467 1.36737 0.86510 0.80643 0.78075 0.82348 1.20951 1.21301 1.19862 0.93924 0.90565 0.92696 0.87763 0.87921 0.81428 0.77154 0.96496 0.88698 0.94741 0.93812 0.88801 0.97782 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 9.44 59.85 0.56 1.71 16 2 N -0.60 -12.87 2.82 -167.87 -0.47 -13.35 16 3 C 0.51 11.04 6.92 -10.98 -0.08 10.97 16 4 O -0.51 -13.54 12.69 5.56 0.07 -13.47 16 5 C -0.07 -1.06 4.84 -29.03 -0.14 -1.20 16 6 C 0.03 0.49 6.10 -82.10 -0.50 -0.01 16 7 C -0.23 -2.86 11.12 -39.38 -0.44 -3.30 16 8 C -0.07 -0.83 12.30 29.74 0.37 -0.47 16 9 O 0.10 1.62 11.20 17.20 0.19 1.82 16 10 N -0.33 -6.35 11.46 33.42 0.38 -5.97 16 11 C 0.29 7.33 0.76 -132.97 -0.10 7.22 16 12 C -0.14 -3.19 6.97 37.16 0.26 -2.93 16 13 C -0.15 -3.77 8.24 37.16 0.31 -3.46 16 14 C -0.48 -13.90 6.86 -34.44 -0.24 -14.14 16 15 H 0.06 1.78 7.15 -52.49 -0.38 1.41 16 16 C 0.06 1.73 5.15 -17.82 -0.09 1.63 16 17 N -0.90 -25.41 9.36 55.43 0.52 -24.89 16 18 Si 0.90 22.88 29.54 -169.99 -5.02 17.86 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 1.20 5.74 -51.93 -0.30 0.90 16 24 H 0.05 0.69 6.40 -51.93 -0.33 0.36 16 25 H 0.10 1.28 8.10 -51.93 -0.42 0.85 16 26 H 0.10 1.44 7.40 -51.93 -0.38 1.05 16 27 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.02 0.33 7.61 -51.93 -0.40 -0.07 16 30 H 0.09 2.41 6.19 -51.93 -0.32 2.09 16 31 H 0.03 0.75 7.12 -51.93 -0.37 0.38 16 32 H 0.04 1.20 6.57 -51.93 -0.34 0.86 16 33 H 0.09 2.60 5.95 -51.92 -0.31 2.29 16 34 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -34.92 286.03 -4.48 -39.40 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.37 Total: -1.75 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.09 Total: -3.96 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.43 Total: -44.20 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.26 Total: -11.65 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.92 -4.48 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.567 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds