Wall clock time and date at job start Mon Mar 30 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00321 * 2 1 4 4 O 1.21278 * 120.00355 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99532 * 0.28257 * 3 2 1 6 6 C 1.50697 * 109.46775 * 179.71939 * 5 3 2 7 7 C 1.41385 * 126.80112 * 124.70724 * 6 5 3 8 8 C 1.35454 * 103.98210 * 179.88461 * 7 6 5 9 9 O 1.34033 * 106.44709 * 0.37267 * 8 7 6 10 10 N 1.20919 * 111.57245 * 359.74810 * 9 8 7 11 11 C 1.46499 * 119.99856 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47175 * 354.61966 * 11 2 1 13 13 C 1.53001 * 109.47296 * 114.62501 * 11 2 1 14 14 C 1.50707 * 109.46760 * 234.62111 * 11 2 1 15 15 H 1.07993 * 120.00128 * 1.53664 * 14 11 2 16 16 C 1.37874 * 119.99779 * 181.52795 * 14 11 2 17 17 N 1.31516 * 120.00378 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00024 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47186 * 90.00115 * 18 16 14 20 20 H 1.48500 * 109.47289 * 210.00464 * 18 16 14 21 21 H 1.48504 * 109.46934 * 330.00391 * 18 16 14 22 22 H 1.09001 * 109.47247 * 90.89014 * 1 2 3 23 23 H 1.08998 * 109.47218 * 210.89185 * 1 2 3 24 24 H 1.08995 * 109.47022 * 330.89439 * 1 2 3 25 25 H 1.09001 * 109.47021 * 299.71652 * 5 3 2 26 26 H 1.08998 * 109.47228 * 59.71896 * 5 3 2 27 27 H 1.08000 * 128.00638 * 0.03015 * 7 6 5 28 28 H 1.08002 * 126.77384 * 180.09849 * 8 7 6 29 29 H 1.08999 * 109.47309 * 60.00821 * 12 11 2 30 30 H 1.09002 * 109.46977 * 179.97438 * 12 11 2 31 31 H 1.08992 * 109.47656 * 300.00461 * 12 11 2 32 32 H 1.09003 * 109.47258 * 60.00116 * 13 11 2 33 33 H 1.09009 * 109.46804 * 179.97438 * 13 11 2 34 34 H 1.08994 * 109.46997 * 299.99608 * 13 11 2 35 35 H 0.96999 * 120.00025 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0064 6 6 2.3647 3.6176 0.0120 7 6 2.4252 4.6848 -0.9134 8 6 3.4622 5.4387 -0.4764 9 8 3.9464 4.8237 0.6117 10 7 3.3262 3.8174 0.8666 11 6 2.1975 -1.2687 -0.0006 12 6 1.2087 -2.4285 0.1342 13 6 2.9730 -1.4094 -1.3119 14 6 3.1611 -1.2929 1.1579 15 1 3.2041 -0.4584 1.8420 16 6 3.9875 -2.3806 1.3446 17 7 3.9353 -3.3968 0.5114 18 14 5.1814 -2.4110 2.7810 19 1 4.5206 -3.0243 3.9610 20 1 6.3782 -3.2095 2.4131 21 1 5.5944 -1.0232 3.1107 22 1 -0.3634 -0.0160 -1.0275 23 1 -0.3633 -0.8819 0.5276 24 1 -0.3633 0.8979 0.4999 25 1 0.7587 2.5344 -0.8833 26 1 0.7588 2.5257 0.8967 27 1 1.7899 4.8598 -1.7691 28 1 3.8295 6.3523 -0.9199 29 1 0.5118 -2.4111 -0.7038 30 1 1.7537 -3.3725 0.1333 31 1 0.6562 -2.3284 1.0683 32 1 3.6775 -0.5831 -1.4079 33 1 3.5184 -2.3532 -1.3121 34 1 2.2761 -1.3919 -2.1498 35 1 4.5170 -4.1619 0.6425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259835339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:28 Heat of formation + Delta-G solvation = 17.643297 kcal Electronic energy + Delta-G solvation = -19252.721464 eV Core-core repulsion = 16254.206041 eV Total energy + Delta-G solvation = -2998.515422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.81789 -40.79087 -37.55376 -35.47364 -34.92050 -32.63046 -32.24384 -29.84392 -28.58047 -27.34989 -26.26509 -24.03767 -23.28754 -21.47809 -19.81606 -18.67011 -18.56719 -18.15878 -17.24542 -17.08683 -16.35364 -16.16327 -15.57046 -14.90519 -14.49635 -14.22985 -13.96556 -13.58440 -13.41943 -13.37673 -13.17504 -13.10714 -12.78305 -12.67082 -12.42276 -12.29129 -12.10855 -12.01735 -11.75614 -11.13782 -10.98313 -10.50306 -10.46054 -10.15745 -9.14365 -8.06797 -6.15522 0.78500 1.30652 1.34008 1.37051 1.45431 2.00402 2.38148 2.54812 2.66523 3.16764 3.31635 3.70977 3.98952 4.27281 4.41688 4.48183 4.51122 4.67526 4.73471 4.80526 4.87123 4.89232 4.93009 5.02162 5.04330 5.24136 5.26455 5.51074 5.62787 5.73533 5.98164 6.25721 6.34759 6.78657 7.02125 7.44386 7.54467 7.71740 8.92742 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.007397 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.390253 B = 3784.187834 C = 4573.415554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.609 5.609 3 C 0.492 3.508 4 O -0.569 6.569 5 C -0.054 4.054 6 C 0.003 3.997 7 C -0.231 4.231 8 C -0.059 4.059 9 O 0.084 5.916 10 N -0.393 5.393 11 C 0.285 3.715 12 C -0.125 4.125 13 C -0.132 4.132 14 C -0.498 4.498 15 H 0.024 0.976 16 C 0.022 3.978 17 N -0.906 5.906 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.296 1.296 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.122 0.878 27 H 0.207 0.793 28 H 0.265 0.735 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.127 14.305 -5.085 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.342 5.342 3 C 0.279 3.721 4 O -0.448 6.448 5 C -0.094 4.094 6 C -0.156 4.156 7 C -0.252 4.252 8 C -0.139 4.139 9 O 0.017 5.983 10 N -0.097 5.097 11 C 0.202 3.798 12 C -0.183 4.183 13 C -0.191 4.191 14 C -0.537 4.537 15 H 0.043 0.957 16 C -0.176 4.176 17 N -0.546 5.546 18 Si 0.767 3.233 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.222 1.222 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.166 0.834 26 H 0.139 0.861 27 H 0.224 0.776 28 H 0.280 0.720 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.991 13.416 -4.017 16.643 hybrid contribution 0.705 -0.043 0.147 0.722 sum -8.286 13.374 -3.870 16.202 Atomic orbital electron populations 1.22084 0.78620 1.04243 1.02786 1.48369 1.07763 1.06117 1.71927 1.20910 0.88030 0.86144 0.77002 1.90699 1.16293 1.87678 1.50131 1.20182 0.95592 0.86155 1.07508 1.23505 0.97500 0.99590 0.94977 1.23119 1.03378 0.94973 1.03696 1.26970 0.95876 1.01794 0.89292 1.84808 1.46687 1.27217 1.39626 1.73958 1.08342 1.01995 1.25387 1.18034 0.89290 0.79950 0.92556 1.21852 0.97400 1.00323 0.98691 1.21918 0.99234 1.01523 0.96385 1.21309 1.20443 1.01429 1.10556 0.95737 1.25309 0.98152 0.95631 0.98506 1.69858 1.40090 1.07491 1.37163 0.85846 0.79631 0.76771 0.81015 1.19271 1.20328 1.22248 0.91091 0.90677 0.89248 0.83368 0.86064 0.77626 0.71962 0.93337 0.91429 0.94067 0.96820 0.91141 0.95354 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.79 9.44 127.77 1.21 2.99 16 2 N -0.61 -25.33 2.82 -803.41 -2.26 -27.59 16 3 C 0.49 21.36 6.92 87.66 0.61 21.96 16 4 O -0.57 -31.66 12.69 -3.02 -0.04 -31.70 16 5 C -0.05 -1.60 4.84 29.10 0.14 -1.46 16 6 C 0.00 0.10 6.10 43.58 0.27 0.36 16 7 C -0.23 -5.02 11.12 22.40 0.25 -4.77 16 8 C -0.06 -1.17 12.30 67.18 0.83 -0.34 16 9 O 0.08 2.66 11.20 71.70 0.80 3.46 16 10 N -0.39 -15.37 11.46 -49.56 -0.57 -15.94 16 11 C 0.28 14.31 0.76 2.86 0.00 14.32 16 12 C -0.12 -5.56 6.97 71.98 0.50 -5.06 16 13 C -0.13 -6.90 8.24 71.98 0.59 -6.30 16 14 C -0.50 -29.44 6.86 25.60 0.18 -29.26 16 15 H 0.02 1.57 7.15 -2.91 -0.02 1.55 16 16 C 0.02 1.30 5.15 84.65 0.44 1.74 16 17 N -0.91 -52.04 9.36 21.45 0.20 -51.84 16 18 Si 0.94 48.07 29.54 68.60 2.03 50.10 16 19 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.30 -16.12 7.11 99.48 0.71 -15.41 16 22 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 2.11 5.74 -2.39 -0.01 2.09 16 24 H 0.09 1.85 6.40 -2.39 -0.02 1.83 16 25 H 0.15 2.95 8.10 -2.39 -0.02 2.93 16 26 H 0.12 3.07 7.40 -2.39 -0.02 3.05 16 27 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.26 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.05 1.81 7.61 -2.39 -0.02 1.80 16 30 H 0.07 3.41 6.19 -2.39 -0.01 3.39 16 31 H 0.04 1.74 7.12 -2.39 -0.02 1.72 16 32 H 0.01 0.74 6.57 -2.39 -0.02 0.72 16 33 H 0.07 3.98 5.95 -2.38 -0.01 3.97 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -82.19 286.03 6.26 -75.92 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.10 Total: 3.41 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.00 Total: -5.82 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -2.63 Total: -95.37 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: 0.76 Total: -28.24 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -82.19 6.26 -75.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.568 kcal (2) G-P(sol) polarization free energy of solvation -82.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds