Wall clock time and date at job start Mon Mar 30 2020 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34020 * 126.66675 * 2 1 4 4 N 1.20900 * 111.84490 * 179.72840 * 3 2 1 5 5 C 1.30987 * 111.44144 * 0.48161 * 4 3 2 6 6 C 1.48324 * 126.93933 * 179.79456 * 5 4 3 7 7 O 1.21489 * 120.00280 * 185.41347 * 6 5 4 8 8 N 1.34781 * 119.99959 * 5.42651 * 6 5 4 9 9 C 1.46501 * 120.00198 * 5.30802 * 8 6 5 10 10 C 1.46504 * 119.99956 * 185.31513 * 8 6 5 11 11 H 1.09000 * 109.47036 * 359.97438 * 10 8 6 12 12 C 1.52992 * 109.46907 * 239.99420 * 10 8 6 13 13 C 1.50702 * 109.47281 * 119.99413 * 10 8 6 14 14 H 1.08005 * 119.99823 * 359.97438 * 13 10 8 15 15 C 1.37873 * 120.00418 * 179.97438 * 13 10 8 16 16 N 1.31522 * 119.99666 * 0.02562 * 15 13 10 17 17 Si 1.86792 * 120.00322 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46991 * 90.00246 * 17 15 13 19 19 H 1.48502 * 109.47428 * 210.00084 * 17 15 13 20 20 H 1.48494 * 109.47288 * 330.00045 * 17 15 13 21 21 C 1.35315 * 126.66444 * 180.02562 * 2 1 3 22 22 C 1.50697 * 128.04220 * 0.02562 * 21 2 1 23 23 H 1.09001 * 109.47223 * 269.98066 * 1 2 3 24 24 H 1.09006 * 109.47108 * 29.97739 * 1 2 3 25 25 H 1.08998 * 109.47159 * 149.97498 * 1 2 3 26 26 H 1.08997 * 109.47130 * 275.29402 * 9 8 6 27 27 H 1.09004 * 109.46955 * 35.28630 * 9 8 6 28 28 H 1.08997 * 109.47059 * 155.29015 * 9 8 6 29 29 H 1.09000 * 109.47388 * 299.99926 * 12 10 8 30 30 H 1.09003 * 109.47326 * 180.02562 * 12 10 8 31 31 H 1.08996 * 109.47448 * 60.00010 * 12 10 8 32 32 H 0.96991 * 120.00180 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.46678 * 269.97548 * 22 21 2 34 34 H 1.09005 * 109.46990 * 29.96752 * 22 21 2 35 35 H 1.08997 * 109.47231 * 149.96927 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3073 1.0750 0.0000 4 7 3.4761 0.7657 0.0053 5 6 3.6271 -0.5354 -0.0007 6 6 4.9075 -1.2841 -0.0013 7 8 4.9034 -2.4945 -0.1064 8 7 6.0756 -0.6218 0.1151 9 6 6.0774 0.8228 0.3588 10 6 7.3434 -1.3464 -0.0021 11 1 7.1429 -2.4029 -0.1807 12 6 8.1412 -1.1912 1.2941 13 6 8.1389 -0.7843 -1.1520 14 1 7.7397 0.0310 -1.7373 15 6 9.3762 -1.3106 -1.4570 16 7 9.8620 -2.3038 -0.7446 17 14 10.3624 -0.6134 -2.8819 18 1 11.2281 0.4892 -2.3919 19 1 11.2084 -1.6834 -3.4689 20 1 9.4349 -0.0917 -3.9175 21 6 2.3150 -1.0854 -0.0005 22 6 1.9175 -2.5390 -0.0017 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 5.9871 1.3514 -0.5901 27 1 5.2366 1.0839 1.0015 28 1 7.0097 1.1079 0.8463 29 1 8.3417 -0.1348 1.4730 30 1 9.0848 -1.7300 1.2067 31 1 7.5660 -1.5978 2.1258 32 1 10.7322 -2.6743 -0.9593 33 1 1.8218 -2.8903 1.0258 34 1 0.9631 -2.6543 -0.5154 35 1 2.6800 -3.1238 -0.5161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259864322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:11 Heat of formation + Delta-G solvation = 7.739590 kcal Electronic energy + Delta-G solvation = -18902.088705 eV Core-core repulsion = 15903.143825 eV Total energy + Delta-G solvation = -2998.944879 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.13131 -40.79662 -37.41139 -35.94659 -35.14958 -34.11874 -31.44761 -29.98404 -28.27043 -27.72033 -27.36284 -25.66742 -22.75275 -22.19143 -20.13360 -18.97345 -18.57193 -18.06627 -17.68213 -17.16896 -16.23606 -16.20461 -15.07642 -14.92184 -14.60332 -14.37459 -14.31738 -14.11046 -13.67456 -13.59818 -13.53538 -13.06978 -13.02690 -12.85778 -12.80248 -12.64978 -12.28920 -12.18521 -12.11987 -11.30228 -11.26399 -11.09344 -10.58468 -10.09623 -9.53490 -8.20953 -6.38274 0.10813 0.67604 1.38511 1.39721 1.50138 1.92303 2.08209 2.19480 2.39317 2.91362 3.06857 3.50797 3.78704 3.98400 4.23435 4.34608 4.57270 4.63571 4.66756 4.71310 4.79967 4.81890 4.84208 4.91081 4.95322 4.98107 5.18040 5.33797 5.41763 5.48067 5.56977 5.91421 6.05626 6.54434 6.66050 6.97534 7.14506 7.33837 8.83950 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034896 B = 0.005564 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.185733 B = 5031.317389 C = 5214.836224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.023 4.023 3 O 0.127 5.873 4 N -0.341 5.341 5 C -0.049 4.049 6 C 0.572 3.428 7 O -0.572 6.572 8 N -0.585 5.585 9 C 0.096 3.904 10 C 0.262 3.738 11 H 0.018 0.982 12 C -0.133 4.133 13 C -0.545 4.545 14 H 0.054 0.946 15 C 0.020 3.980 16 N -0.914 5.914 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.275 1.275 21 C -0.174 4.174 22 C -0.075 4.075 23 H 0.110 0.890 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 6.469 2.689 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 O 0.050 5.950 4 N -0.042 5.042 5 C -0.206 4.206 6 C 0.358 3.642 7 O -0.452 6.452 8 N -0.315 5.315 9 C -0.046 4.046 10 C 0.161 3.839 11 H 0.036 0.964 12 C -0.191 4.191 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.200 1.200 21 C -0.180 4.180 22 C -0.132 4.132 23 H 0.128 0.872 24 H 0.122 0.878 25 H 0.129 0.871 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.543 6.720 2.667 18.974 hybrid contribution 0.896 -0.610 -0.695 1.288 sum -16.646 6.110 1.972 17.841 Atomic orbital electron populations 1.20660 0.79281 1.06506 1.05979 1.25013 0.97955 0.83524 1.02155 1.84725 1.10949 1.33968 1.65325 1.74333 0.97871 1.15004 1.16980 1.23398 0.96578 0.90789 1.09814 1.17503 0.82718 0.86318 0.77619 1.90666 1.87002 1.14363 1.53163 1.48215 1.06163 1.10150 1.66966 1.21774 1.02878 0.78910 1.01083 1.18718 0.78654 0.91809 0.94739 0.96426 1.21895 1.01478 1.00513 0.95237 1.21487 1.02914 1.19046 1.14870 0.92728 1.25717 0.98195 0.94960 0.99189 1.70003 1.19131 1.25399 1.40652 0.85404 0.78264 0.78228 0.78812 1.19087 1.20531 1.19954 1.21344 0.89128 1.00039 1.07459 1.20224 1.02611 0.86895 1.03431 0.87184 0.87784 0.87131 0.93172 0.90216 0.90336 0.93456 0.90631 0.95984 0.92320 0.90096 0.87423 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.30 71.24 0.73 0.16 16 2 C -0.02 -0.50 7.47 25.01 0.19 -0.31 16 3 O 0.13 3.36 11.18 71.85 0.80 4.17 16 4 N -0.34 -11.58 8.95 -49.52 -0.44 -12.02 16 5 C -0.05 -1.86 6.81 42.96 0.29 -1.57 16 6 C 0.57 27.31 7.69 86.93 0.67 27.98 16 7 O -0.57 -30.57 14.65 -3.68 -0.05 -30.62 16 8 N -0.58 -28.30 2.75 -829.67 -2.28 -30.59 16 9 C 0.10 3.83 8.55 127.77 1.09 4.93 16 10 C 0.26 14.47 2.62 44.24 0.12 14.59 16 11 H 0.02 1.14 6.91 -2.39 -0.02 1.12 16 12 C -0.13 -6.72 8.96 71.98 0.64 -6.08 16 13 C -0.54 -31.13 8.37 25.60 0.21 -30.91 16 14 H 0.05 3.10 7.65 -2.91 -0.02 3.08 16 15 C 0.02 1.10 5.30 84.65 0.45 1.55 16 16 N -0.91 -53.24 11.32 21.45 0.24 -53.00 16 17 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 C -0.17 -5.08 6.34 -19.54 -0.12 -5.20 16 22 C -0.07 -1.86 9.89 71.24 0.70 -1.16 16 23 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.11 0.59 7.43 -2.39 -0.02 0.57 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.87 5.95 -2.39 -0.01 2.85 16 28 H 0.08 3.03 6.44 -2.39 -0.02 3.01 16 29 H 0.05 2.19 6.67 -2.39 -0.02 2.17 16 30 H 0.08 4.15 6.07 -2.39 -0.01 4.13 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.11 1.70 7.43 -2.38 -0.02 1.69 16 35 H 0.05 1.75 6.80 -2.39 -0.02 1.74 16 Total: -1.00 -72.52 292.36 6.37 -66.15 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.10 Total: 5.78 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.98 Total: 3.97 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -2.48 Total: -95.61 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.75 Total: -26.46 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.52 6.37 -66.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259864322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.889 kcal (2) G-P(sol) polarization free energy of solvation -72.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds