Wall clock time and date at job start Mon Mar 30 2020 04:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46829 * 2 1 4 4 C 1.52999 * 109.46982 * 119.99645 * 2 1 3 5 5 C 1.53002 * 109.47220 * 65.00461 * 4 2 1 6 6 H 1.09006 * 109.46780 * 305.00057 * 5 4 2 7 7 C 1.50692 * 109.47419 * 184.99965 * 5 4 2 8 8 H 1.08001 * 120.00131 * 120.00003 * 7 5 4 9 9 C 1.37880 * 119.99714 * 299.99658 * 7 5 4 10 10 N 1.31508 * 120.00397 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99662 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46800 * 90.00516 * 11 9 7 13 13 H 1.48506 * 109.47260 * 210.00016 * 11 9 7 14 14 H 1.48501 * 109.47490 * 330.00525 * 11 9 7 15 15 N 1.46506 * 109.46871 * 64.99613 * 5 4 2 16 16 C 1.34781 * 119.99806 * 205.00203 * 15 5 4 17 17 O 1.21603 * 119.99927 * 0.02562 * 16 15 5 18 18 C 1.47395 * 119.99634 * 180.02562 * 16 15 5 19 19 C 1.47106 * 128.56035 * 180.02562 * 18 16 15 20 20 N 1.30020 * 105.32903 * 179.97438 * 19 18 16 21 21 O 1.20659 * 112.29561 * 359.97438 * 20 19 18 22 22 C 1.33493 * 113.16192 * 0.02562 * 21 20 19 23 23 H 1.09002 * 109.47480 * 60.00426 * 1 2 3 24 24 H 1.09005 * 109.46821 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47543 * 300.00266 * 1 2 3 26 26 H 1.09000 * 109.47543 * 239.99734 * 2 1 3 27 27 H 1.09000 * 109.46909 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47216 * 300.00031 * 3 2 1 29 29 H 1.09000 * 109.47055 * 60.00075 * 3 2 1 30 30 H 1.08993 * 109.47391 * 305.00483 * 4 2 1 31 31 H 1.09000 * 109.47317 * 185.00243 * 4 2 1 32 32 H 0.97000 * 120.00050 * 179.97438 * 10 9 7 33 33 H 0.96990 * 120.00196 * 25.00227 * 15 5 4 34 34 H 1.08002 * 127.33908 * 359.71509 * 19 18 16 35 35 H 1.07994 * 126.82791 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5563 -2.2707 1.0527 7 6 2.0293 -2.8783 2.4723 8 1 1.2750 -3.3414 3.0912 9 6 3.3529 -2.9120 2.8572 10 7 4.2713 -2.3478 2.1038 11 14 3.8412 -3.7579 4.4495 12 1 4.1414 -5.1869 4.1789 13 1 5.0463 -3.0968 5.0118 14 1 2.7243 -3.6625 5.4235 15 7 2.3148 -2.8420 0.0626 16 6 1.7791 -3.9395 -0.5076 17 8 0.7315 -4.3927 -0.0882 18 6 2.4631 -4.5902 -1.6395 19 6 2.0523 -5.7831 -2.3959 20 7 2.9793 -5.9590 -3.2905 21 8 3.8469 -5.1233 -3.2210 22 6 3.6408 -4.2320 -2.2488 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6053 -0.2617 2.1369 31 1 3.1262 -0.6443 1.2953 32 1 5.2024 -2.3712 2.3748 33 1 3.1502 -2.4803 -0.2721 34 1 1.1708 -6.3870 -2.2388 35 1 4.2738 -3.3954 -1.9928 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259916469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:45 Heat of formation + Delta-G solvation = 5.734877 kcal Electronic energy + Delta-G solvation = -18984.778799 eV Core-core repulsion = 15985.746989 eV Total energy + Delta-G solvation = -2999.031810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.59101 -38.59801 -36.28375 -33.61692 -33.25611 -32.23098 -31.31500 -28.43973 -26.63577 -25.17696 -24.32701 -22.21422 -21.36357 -19.72768 -18.97856 -18.02238 -17.36863 -16.49182 -16.25836 -15.09245 -14.62808 -14.26755 -14.06170 -13.73055 -13.36388 -13.07587 -12.77436 -12.47070 -12.06236 -11.72597 -11.47057 -11.18134 -11.02991 -10.98168 -10.78968 -10.55862 -10.09716 -10.05737 -9.87353 -9.66312 -9.35123 -9.33669 -9.02410 -8.57714 -7.63631 -6.17848 -4.25380 1.50808 2.15948 3.22072 3.29373 3.30282 3.34925 4.07663 4.27961 4.34627 4.53742 4.84664 5.16481 5.32182 5.52619 5.60143 5.65843 5.74982 5.89032 6.06378 6.18418 6.28405 6.29199 6.36405 6.61212 6.68863 6.72357 6.87739 7.09135 7.21851 7.62110 7.80410 7.91035 8.21073 8.41008 8.64719 8.86887 9.33336 9.45671 10.84815 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.009005 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.988957 B = 3108.514687 C = 4270.408727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.142 4.142 4 C -0.114 4.114 5 C 0.264 3.736 6 H 0.046 0.954 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.076 3.924 10 N -0.889 5.889 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 N -0.672 5.672 16 C 0.576 3.424 17 O -0.556 6.556 18 C -0.232 4.232 19 C 0.035 3.965 20 N -0.369 5.369 21 O 0.085 5.915 22 C -0.021 4.021 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.262 0.738 33 H 0.389 0.611 34 H 0.199 0.801 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 3.232 -7.139 7.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.199 4.199 4 C -0.152 4.152 5 C 0.163 3.837 6 H 0.064 0.936 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.127 4.127 10 N -0.528 5.528 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 N -0.318 5.318 16 C 0.359 3.641 17 O -0.437 6.437 18 C -0.239 4.239 19 C -0.148 4.148 20 N -0.075 5.075 21 O 0.025 5.975 22 C -0.103 4.103 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.222 0.778 34 H 0.216 0.784 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.017 2.124 -7.772 8.057 hybrid contribution 0.574 0.072 1.484 1.593 sum 0.557 2.197 -6.288 6.684 Atomic orbital electron populations 1.21872 0.96458 1.01753 1.00182 1.21238 0.95046 0.95355 1.00321 1.21815 1.00754 0.96944 1.00396 1.21907 1.04018 0.94990 0.94306 1.18765 0.92237 0.88946 0.83750 0.93604 1.21519 0.93063 1.35677 1.05652 0.92291 1.24937 0.96520 0.94367 0.96830 1.69753 1.01165 1.43824 1.38043 0.86585 0.78023 0.79710 0.83650 1.20722 1.21169 1.19775 1.46486 1.25272 1.26660 1.33405 1.16828 0.84710 0.81429 0.81103 1.90705 1.23871 1.64416 1.64688 1.23069 0.98043 1.00006 1.02801 1.26313 0.99803 0.96690 0.91952 1.73628 1.00480 1.11082 1.22345 1.84492 1.39297 1.29369 1.44295 1.26444 0.97861 0.96174 0.89790 0.94243 0.92308 0.93241 0.92266 0.92977 0.94044 0.93274 0.92725 0.88578 0.92793 0.77760 0.78437 0.75911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.95 37.16 0.33 -2.00 16 2 C -0.10 -1.69 2.86 -90.62 -0.26 -1.95 16 3 C -0.14 -2.05 9.19 37.16 0.34 -1.71 16 4 C -0.11 -2.30 3.92 -26.73 -0.10 -2.41 16 5 C 0.26 6.04 2.01 -69.08 -0.14 5.91 16 6 H 0.05 1.11 5.78 -51.93 -0.30 0.81 16 7 C -0.52 -13.60 8.87 -34.44 -0.31 -13.90 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.08 1.94 5.23 -17.82 -0.09 1.84 16 10 N -0.89 -21.79 10.62 55.43 0.59 -21.20 16 11 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 N -0.67 -14.10 3.85 -56.02 -0.22 -14.32 16 16 C 0.58 12.38 7.77 -12.53 -0.10 12.29 16 17 O -0.56 -13.92 16.70 5.27 0.09 -13.83 16 18 C -0.23 -4.09 6.47 -102.90 -0.67 -4.76 16 19 C 0.03 0.57 12.38 -14.72 -0.18 0.39 16 20 N -0.37 -5.92 12.01 31.81 0.38 -5.54 16 21 O 0.09 1.25 11.06 18.65 0.21 1.46 16 22 C -0.02 -0.29 11.85 30.41 0.36 0.07 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 1.04 6.46 -51.93 -0.34 0.71 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.99 7.62 -51.93 -0.40 0.60 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 2.10 6.22 -51.93 -0.32 1.78 16 32 H 0.26 6.26 8.31 -40.82 -0.34 5.92 16 33 H 0.39 7.50 7.47 -40.82 -0.30 7.19 16 34 H 0.20 2.87 8.06 -52.49 -0.42 2.44 16 35 H 0.22 2.38 7.68 -52.49 -0.40 1.98 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -28.50 298.86 -4.85 -33.35 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.57 Total: 6.33 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.81 Total: -6.24 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.76 Total: -41.06 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.29 Total: -12.37 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.50 -4.85 -33.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259916469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.084 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds