Wall clock time and date at job start Mon Mar 30 2020 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33493 * 126.83321 * 2 1 4 4 N 1.20651 * 113.15910 * 179.97438 * 3 2 1 5 5 C 1.30008 * 112.30430 * 359.73619 * 4 3 2 6 6 C 1.37357 * 126.82607 * 180.02562 * 2 1 3 7 7 C 1.47398 * 128.56748 * 359.95985 * 6 2 1 8 8 O 1.21602 * 120.00088 * 0.02562 * 7 6 2 9 9 N 1.34782 * 119.99938 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99718 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47741 * 35.00295 * 10 9 7 12 12 C 1.50703 * 109.47316 * 155.00505 * 10 9 7 13 13 H 1.08001 * 119.99538 * 5.46366 * 12 10 9 14 14 C 1.37870 * 120.00198 * 185.73421 * 12 10 9 15 15 N 1.31512 * 120.00374 * 9.10469 * 14 12 10 16 16 Si 1.86804 * 120.00092 * 189.10092 * 14 12 10 17 17 H 1.48502 * 109.47154 * 89.99972 * 16 14 12 18 18 H 1.48493 * 109.47294 * 210.00346 * 16 14 12 19 19 H 1.48503 * 109.47071 * 330.00429 * 16 14 12 20 20 C 1.53007 * 109.47317 * 275.00176 * 10 9 7 21 21 C 1.52996 * 109.46976 * 305.48083 * 20 10 9 22 22 C 1.53003 * 109.46884 * 65.47677 * 20 10 9 23 23 H 1.08991 * 109.47100 * 270.00248 * 1 2 3 24 24 H 1.09002 * 109.46898 * 30.00418 * 1 2 3 25 25 H 1.09003 * 109.47130 * 149.99568 * 1 2 3 26 26 H 1.07997 * 127.34087 * 180.27365 * 5 4 3 27 27 H 0.96997 * 119.99745 * 0.02562 * 9 7 6 28 28 H 0.96994 * 120.00250 * 179.97438 * 15 14 12 29 29 H 1.09003 * 109.47250 * 185.47603 * 20 10 9 30 30 H 1.09003 * 109.46813 * 175.29917 * 21 20 10 31 31 H 1.08998 * 109.47235 * 295.29040 * 21 20 10 32 32 H 1.08995 * 109.47705 * 55.29315 * 21 20 10 33 33 H 1.09003 * 109.46748 * 60.00344 * 22 20 10 34 34 H 1.08996 * 109.46970 * 179.97438 * 22 20 10 35 35 H 1.09003 * 109.47116 * 300.00008 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3073 1.0685 0.0000 4 7 3.4796 0.7832 0.0005 5 6 3.6747 -0.5021 0.0064 6 6 2.3303 -1.0995 -0.0005 7 6 1.9586 -2.5258 -0.0003 8 8 0.7862 -2.8486 -0.0001 9 7 2.9182 -3.4723 -0.0014 10 6 2.5487 -4.8899 -0.0018 11 1 1.6421 -5.0290 -0.5907 12 6 3.6677 -5.7005 -0.6033 13 1 4.5987 -5.2219 -0.8692 14 6 3.5010 -7.0520 -0.8192 15 7 2.3150 -7.6003 -0.6706 16 14 4.9600 -8.1043 -1.3230 17 1 5.6313 -8.6336 -0.1087 18 1 4.4883 -9.2359 -2.1608 19 1 5.9202 -7.2798 -2.0998 20 6 2.2993 -5.3524 1.4352 21 6 3.5243 -5.0318 2.2939 22 6 1.0767 -4.6262 1.9997 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 4.6219 -1.0209 0.0123 27 1 3.8533 -3.2148 -0.0019 28 1 2.1977 -8.5510 -0.8229 29 1 2.1199 -6.4275 1.4449 30 1 3.3155 -5.2846 3.3335 31 1 4.3765 -5.6137 1.9428 32 1 3.7538 -3.9691 2.2174 33 1 0.2039 -4.8546 1.3879 34 1 0.8987 -4.9560 3.0233 35 1 1.2560 -3.5511 1.9900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:55 Heat of formation + Delta-G solvation = 9.217181 kcal Electronic energy + Delta-G solvation = -19079.273076 eV Core-core repulsion = 16080.392270 eV Total energy + Delta-G solvation = -2998.880806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.76270 -39.08421 -35.80333 -33.63513 -33.15701 -32.31968 -31.93953 -28.05132 -26.97063 -26.09230 -24.51100 -22.90184 -21.44839 -20.01908 -18.56960 -17.83925 -17.64133 -16.59444 -15.63817 -15.23202 -14.71814 -14.55680 -14.08622 -13.36585 -13.23021 -13.10404 -12.76676 -12.55971 -12.45781 -12.42452 -11.42484 -11.21331 -11.19200 -11.05249 -10.93742 -10.42921 -10.24898 -10.22321 -10.00138 -9.61971 -9.26492 -9.20898 -9.09310 -8.52327 -7.88245 -6.18255 -4.22866 1.30461 1.94654 2.97717 3.22304 3.30216 3.31019 3.82712 3.95795 4.31813 4.46635 4.51930 4.87675 5.15392 5.30878 5.48371 5.55360 5.75600 5.91776 6.11803 6.16506 6.19317 6.28768 6.53683 6.74568 6.87345 7.01077 7.24554 7.33425 7.37688 7.55901 7.66754 7.77458 8.03696 8.25857 8.58716 8.73907 9.02562 9.42268 10.89983 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.006184 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.793515 B = 4526.963635 C = 4870.034002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.033 3.967 3 O 0.084 5.916 4 N -0.363 5.363 5 C 0.020 3.980 6 C -0.251 4.251 7 C 0.581 3.419 8 O -0.541 6.541 9 N -0.694 5.694 10 C 0.276 3.724 11 H 0.058 0.942 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.071 3.929 15 N -0.879 5.879 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.098 4.098 21 C -0.128 4.128 22 C -0.134 4.134 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.199 0.801 27 H 0.388 0.612 28 H 0.265 0.735 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.024 0.976 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 11.087 2.737 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.031 4.031 3 O 0.024 5.976 4 N -0.069 5.069 5 C -0.162 4.162 6 C -0.258 4.258 7 C 0.366 3.634 8 O -0.421 6.421 9 N -0.340 5.340 10 C 0.174 3.826 11 H 0.076 0.924 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.133 4.133 15 N -0.516 5.516 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.118 4.118 21 C -0.185 4.185 22 C -0.191 4.191 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.129 0.871 26 H 0.216 0.784 27 H 0.220 0.780 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.481 11.703 2.710 12.023 hybrid contribution 1.196 -1.342 -0.216 1.811 sum 0.716 10.362 2.495 10.682 Atomic orbital electron populations 1.20552 0.82842 1.05315 1.04627 1.24803 0.96229 0.85175 0.96910 1.84516 1.11394 1.33595 1.68081 1.73599 0.96085 1.17691 1.19550 1.26412 0.99386 0.89496 1.00942 1.22564 0.92193 0.96545 1.14496 1.16784 0.86245 0.82605 0.77799 1.90749 1.17894 1.81929 1.51543 1.46298 1.07965 1.08441 1.71324 1.18831 0.97688 0.73406 0.92641 0.92407 1.21112 0.99891 0.93401 1.42783 0.92103 1.24842 0.95721 0.97846 0.94871 1.69967 1.21145 1.12352 1.48099 0.86558 0.82612 0.80093 0.78538 1.20458 1.21168 1.19887 1.21463 0.92521 1.01582 0.96236 1.21652 0.99672 0.99797 0.97418 1.21895 0.99323 0.99732 0.98151 0.89005 0.90116 0.87059 0.78433 0.77964 0.92532 0.89416 0.95379 0.92401 0.94652 0.92981 0.95716 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.00 36.01 0.36 -0.48 16 2 C 0.03 0.46 7.55 -34.63 -0.26 0.20 16 3 O 0.08 1.17 11.06 18.65 0.21 1.38 16 4 N -0.36 -5.32 12.01 31.80 0.38 -4.94 16 5 C 0.02 0.28 11.95 -14.72 -0.18 0.11 16 6 C -0.25 -3.98 6.47 -102.89 -0.67 -4.64 16 7 C 0.58 11.10 6.40 -12.53 -0.08 11.02 16 8 O -0.54 -11.62 12.38 5.28 0.07 -11.56 16 9 N -0.69 -13.64 3.95 -56.02 -0.22 -13.86 16 10 C 0.28 6.52 1.80 -69.08 -0.12 6.39 16 11 H 0.06 1.61 7.52 -51.93 -0.39 1.22 16 12 C -0.53 -13.37 7.74 -34.44 -0.27 -13.63 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 15 N -0.88 -24.02 12.16 55.43 0.67 -23.35 16 16 Si 0.89 20.07 29.55 -169.99 -5.02 15.04 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 20 C -0.10 -2.20 2.64 -90.62 -0.24 -2.44 16 21 C -0.13 -2.52 8.80 37.16 0.33 -2.19 16 22 C -0.13 -2.81 7.80 37.16 0.29 -2.52 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.11 1.43 6.78 -51.93 -0.35 1.08 16 26 H 0.20 2.18 7.88 -52.49 -0.41 1.77 16 27 H 0.39 6.69 7.86 -40.82 -0.32 6.37 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.09 2.22 6.80 -51.93 -0.35 1.87 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.18 7.55 -51.93 -0.39 0.79 16 32 H 0.03 0.64 7.28 -51.93 -0.38 0.26 16 33 H 0.05 1.17 7.87 -51.93 -0.41 0.76 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.88 5.63 -51.93 -0.29 0.59 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -28.71 292.54 -4.97 -33.68 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.53 Total: 5.64 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.93 Total: -6.44 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.83 Total: -42.15 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.27 Total: -10.18 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.71 -4.97 -33.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.898 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds