Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33493 * 126.83321 * 2 1 4 4 N 1.20651 * 113.15910 * 179.97438 * 3 2 1 5 5 C 1.30008 * 112.30430 * 359.73619 * 4 3 2 6 6 C 1.37357 * 126.82607 * 180.02562 * 2 1 3 7 7 C 1.47398 * 128.56748 * 359.95985 * 6 2 1 8 8 O 1.21602 * 120.00088 * 0.02562 * 7 6 2 9 9 N 1.34782 * 119.99938 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99718 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47741 * 35.00295 * 10 9 7 12 12 C 1.50703 * 109.47316 * 155.00505 * 10 9 7 13 13 H 1.08001 * 119.99538 * 5.46366 * 12 10 9 14 14 C 1.37870 * 120.00198 * 185.73421 * 12 10 9 15 15 N 1.31512 * 120.00374 * 9.10469 * 14 12 10 16 16 Si 1.86804 * 120.00092 * 189.10092 * 14 12 10 17 17 H 1.48502 * 109.47154 * 89.99972 * 16 14 12 18 18 H 1.48493 * 109.47294 * 210.00346 * 16 14 12 19 19 H 1.48503 * 109.47071 * 330.00429 * 16 14 12 20 20 C 1.53007 * 109.47317 * 275.00176 * 10 9 7 21 21 C 1.52996 * 109.46976 * 305.48083 * 20 10 9 22 22 C 1.53003 * 109.46884 * 65.47677 * 20 10 9 23 23 H 1.08991 * 109.47100 * 270.00248 * 1 2 3 24 24 H 1.09002 * 109.46898 * 30.00418 * 1 2 3 25 25 H 1.09003 * 109.47130 * 149.99568 * 1 2 3 26 26 H 1.07997 * 127.34087 * 180.27365 * 5 4 3 27 27 H 0.96997 * 119.99745 * 0.02562 * 9 7 6 28 28 H 0.96994 * 120.00250 * 179.97438 * 15 14 12 29 29 H 1.09003 * 109.47250 * 185.47603 * 20 10 9 30 30 H 1.09003 * 109.46813 * 175.29917 * 21 20 10 31 31 H 1.08998 * 109.47235 * 295.29040 * 21 20 10 32 32 H 1.08995 * 109.47705 * 55.29315 * 21 20 10 33 33 H 1.09003 * 109.46748 * 60.00344 * 22 20 10 34 34 H 1.08996 * 109.46970 * 179.97438 * 22 20 10 35 35 H 1.09003 * 109.47116 * 300.00008 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3073 1.0685 0.0000 4 7 3.4796 0.7832 0.0005 5 6 3.6747 -0.5021 0.0064 6 6 2.3303 -1.0995 -0.0005 7 6 1.9586 -2.5258 -0.0003 8 8 0.7862 -2.8486 -0.0001 9 7 2.9182 -3.4723 -0.0014 10 6 2.5487 -4.8899 -0.0018 11 1 1.6421 -5.0290 -0.5907 12 6 3.6677 -5.7005 -0.6033 13 1 4.5987 -5.2219 -0.8692 14 6 3.5010 -7.0520 -0.8192 15 7 2.3150 -7.6003 -0.6706 16 14 4.9600 -8.1043 -1.3230 17 1 5.6313 -8.6336 -0.1087 18 1 4.4883 -9.2359 -2.1608 19 1 5.9202 -7.2798 -2.0998 20 6 2.2993 -5.3524 1.4352 21 6 3.5243 -5.0318 2.2939 22 6 1.0767 -4.6262 1.9997 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 4.6219 -1.0209 0.0123 27 1 3.8533 -3.2148 -0.0019 28 1 2.1977 -8.5510 -0.8229 29 1 2.1199 -6.4275 1.4449 30 1 3.3155 -5.2846 3.3335 31 1 4.3765 -5.6137 1.9428 32 1 3.7538 -3.9691 2.2174 33 1 0.2039 -4.8546 1.3879 34 1 0.8987 -4.9560 3.0233 35 1 1.2560 -3.5511 1.9900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = -8.550009 kcal Electronic energy + Delta-G solvation = -19080.043519 eV Core-core repulsion = 16080.392270 eV Total energy + Delta-G solvation = -2999.651249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.88815 -40.68316 -37.52246 -34.87878 -34.34148 -34.12078 -33.56482 -29.42386 -28.51134 -27.73765 -25.91476 -24.58006 -22.74507 -21.44164 -20.32421 -19.28816 -18.76222 -18.12264 -17.06022 -17.05078 -16.34654 -16.14706 -15.49192 -14.84768 -14.48871 -14.36388 -14.24166 -14.14931 -13.95804 -13.46522 -13.25671 -12.92413 -12.80196 -12.73894 -12.26512 -12.20656 -11.97723 -11.75082 -11.43308 -11.35031 -10.96897 -10.83988 -10.49282 -10.40399 -9.57920 -8.15983 -6.26606 0.12650 0.81253 1.45339 1.46874 1.55481 1.84665 2.35037 2.39813 2.63461 3.16834 3.33279 3.39381 3.73291 4.19089 4.39071 4.44384 4.49488 4.55249 4.66298 4.76716 4.87178 4.92311 5.06092 5.13118 5.19225 5.30625 5.42897 5.56460 5.64029 5.70545 5.80208 5.96031 6.14015 6.80066 6.95032 7.16745 7.36252 7.53954 8.92711 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.006184 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.793515 B = 4526.963635 C = 4870.034002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 O 0.087 5.913 4 N -0.375 5.375 5 C 0.033 3.967 6 C -0.283 4.283 7 C 0.583 3.417 8 O -0.571 6.571 9 N -0.692 5.692 10 C 0.287 3.713 11 H 0.004 0.996 12 C -0.539 4.539 13 H 0.071 0.929 14 C 0.022 3.978 15 N -0.915 5.915 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.291 1.291 19 H -0.264 1.264 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.120 4.120 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.225 0.775 27 H 0.402 0.598 28 H 0.263 0.737 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 12.568 3.341 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.012 4.012 3 O 0.029 5.971 4 N -0.083 5.083 5 C -0.149 4.149 6 C -0.290 4.290 7 C 0.370 3.630 8 O -0.453 6.453 9 N -0.340 5.340 10 C 0.183 3.817 11 H 0.022 0.978 12 C -0.577 4.577 13 H 0.089 0.911 14 C -0.178 4.178 15 N -0.554 5.554 16 Si 0.783 3.217 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.189 1.189 20 C -0.117 4.117 21 C -0.176 4.176 22 C -0.178 4.178 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.109 0.891 26 H 0.242 0.758 27 H 0.236 0.764 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.952 13.230 3.316 13.672 hybrid contribution 0.680 -1.726 -0.431 1.905 sum 1.632 11.503 2.885 11.971 Atomic orbital electron populations 1.20688 0.80954 1.05938 1.05804 1.25266 0.97233 0.84631 0.94033 1.84531 1.11292 1.33271 1.67976 1.73599 0.96349 1.17896 1.20418 1.26781 0.99618 0.89141 0.99378 1.22229 0.93941 0.94965 1.17887 1.17091 0.85569 0.83763 0.76610 1.90738 1.19130 1.82759 1.52686 1.46029 1.08942 1.07077 1.71909 1.18381 0.95129 0.75566 0.92579 0.97775 1.21447 1.00362 0.93716 1.42159 0.91120 1.25633 0.97896 0.99213 0.95093 1.70113 1.23211 1.12437 1.49593 0.85560 0.79597 0.78257 0.78250 1.19800 1.21695 1.18863 1.21335 0.94533 0.99558 0.96281 1.21541 0.97651 1.00720 0.97657 1.21741 0.97670 0.99774 0.98597 0.87377 0.86758 0.89072 0.75814 0.76359 0.92761 0.92820 0.93602 0.93224 0.92925 0.95528 0.93714 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.00 71.24 0.71 -0.83 16 2 C 0.05 1.36 7.55 25.48 0.19 1.56 16 3 O 0.09 2.21 11.06 76.99 0.85 3.06 16 4 N -0.37 -10.07 12.01 -54.20 -0.65 -10.72 16 5 C 0.03 0.85 11.95 87.29 1.04 1.90 16 6 C -0.28 -8.55 6.47 -18.74 -0.12 -8.67 16 7 C 0.58 22.12 6.40 86.65 0.55 22.67 16 8 O -0.57 -25.02 12.38 -4.04 -0.05 -25.07 16 9 N -0.69 -26.94 3.95 -449.40 -1.77 -28.72 16 10 C 0.29 13.82 1.80 44.25 0.08 13.90 16 11 H 0.00 0.25 7.52 -2.39 -0.02 0.24 16 12 C -0.54 -27.06 7.74 25.60 0.20 -26.86 16 13 H 0.07 3.34 7.74 -2.91 -0.02 3.31 16 14 C 0.02 1.16 5.16 84.65 0.44 1.60 16 15 N -0.92 -51.59 12.16 21.44 0.26 -51.33 16 16 Si 0.96 41.10 29.55 68.60 2.03 43.13 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 20 C -0.10 -4.39 2.64 -10.79 -0.03 -4.42 16 21 C -0.12 -4.48 8.80 71.98 0.63 -3.84 16 22 C -0.12 -5.09 7.80 71.98 0.56 -4.53 16 23 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 2.29 6.78 -2.39 -0.02 2.27 16 26 H 0.23 4.23 7.88 -2.91 -0.02 4.21 16 27 H 0.40 13.26 7.86 -92.71 -0.73 12.53 16 28 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.05 2.80 6.80 -2.39 -0.02 2.79 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.94 7.55 -2.39 -0.02 1.93 16 32 H 0.05 1.78 7.28 -2.39 -0.02 1.77 16 33 H 0.03 1.21 7.87 -2.39 -0.02 1.20 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.94 5.63 -2.39 -0.01 1.93 16 Total: -1.00 -63.11 292.54 5.31 -57.81 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.38 Total: 19.39 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.26 Total: -7.54 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -2.16 Total: -90.76 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.80 Total: -22.02 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -63.11 5.31 -57.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.255 kcal (2) G-P(sol) polarization free energy of solvation -63.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds