Wall clock time and date at job start Mon Mar 30 2020 04:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09004 * 109.47057 * 55.00109 * 5 4 2 7 7 C 1.50705 * 109.47541 * 174.99649 * 5 4 2 8 8 H 1.07996 * 120.00742 * 240.00310 * 7 5 4 9 9 C 1.37877 * 119.99426 * 60.00129 * 7 5 4 10 10 N 1.31516 * 120.00292 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 120.00076 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46883 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47183 * 120.00034 * 11 9 7 14 14 H 1.48501 * 109.47258 * 240.00550 * 11 9 7 15 15 N 1.46498 * 109.47321 * 295.00158 * 5 4 2 16 16 C 1.34783 * 119.99964 * 154.99833 * 15 5 4 17 17 O 1.21687 * 120.00079 * 359.97438 * 16 15 5 18 18 C 1.46720 * 119.99725 * 180.02562 * 16 15 5 19 19 C 1.36341 * 126.64519 * 180.02562 * 18 16 15 20 20 N 1.33682 * 107.45735 * 179.97438 * 19 18 16 21 21 C 1.30618 * 108.99650 * 359.97438 * 20 19 18 22 22 O 1.33663 * 109.14966 * 359.73447 * 21 20 19 23 23 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.96996 * 120.00339 * 180.02562 * 10 9 7 33 33 H 0.96992 * 120.00062 * 334.99652 * 15 5 4 34 34 H 1.08009 * 126.26729 * 0.03459 * 19 18 16 35 35 H 1.07999 * 125.42707 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5562 -2.2706 -1.0528 7 6 2.0292 -2.8783 -2.4724 8 1 1.2749 -3.3413 -3.0914 9 6 3.3527 -2.9120 -2.8574 10 7 4.2713 -2.3486 -2.1035 11 14 3.8411 -3.7578 -4.4497 12 1 2.6299 -4.3079 -5.1096 13 1 4.4930 -2.7752 -5.3524 14 1 4.7885 -4.8622 -4.1532 15 7 2.3147 -2.8421 -0.0628 16 6 1.7789 -3.9395 0.5074 17 8 0.7305 -4.3930 0.0877 18 6 2.4591 -4.5868 1.6347 19 6 2.0417 -5.6961 2.3088 20 7 2.9466 -5.9521 3.2589 21 6 3.8939 -5.0549 3.1968 22 8 3.6262 -4.2029 2.2023 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6443 -1.2952 32 1 5.2024 -2.3720 -2.3744 33 1 3.1501 -2.4805 0.2719 34 1 1.1449 -6.2643 2.1106 35 1 4.7579 -5.0111 3.8432 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259927394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:41 Heat of formation + Delta-G solvation = -51.561063 kcal Electronic energy + Delta-G solvation = -19032.334825 eV Core-core repulsion = 16030.818477 eV Total energy + Delta-G solvation = -3001.516349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.34610 -40.36715 -37.96169 -35.94473 -35.27890 -33.87746 -31.64011 -29.97871 -27.92094 -27.01615 -25.20018 -23.65011 -22.95318 -21.58135 -20.52514 -19.36349 -18.48287 -17.76797 -17.71584 -16.89137 -16.38839 -15.70437 -15.48203 -15.16385 -14.96266 -14.83760 -14.38486 -14.26444 -13.67972 -13.04409 -12.94179 -12.81361 -12.70912 -12.52424 -12.50673 -12.14722 -11.91728 -11.81416 -11.40894 -11.38863 -11.17082 -10.92559 -10.51367 -10.16482 -9.50682 -8.15262 -6.30756 -0.06121 1.33930 1.39439 1.49130 1.51514 1.59892 2.26332 2.40234 2.63266 3.18476 3.33509 3.96701 4.08520 4.16064 4.25221 4.29030 4.55796 4.66667 4.83385 4.87093 4.90262 5.03401 5.08687 5.20345 5.23930 5.28777 5.34125 5.53816 5.62436 5.67687 5.92466 6.03773 6.25547 6.49115 6.66878 6.95259 7.40304 7.46666 8.84330 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014283 B = 0.009231 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.913963 B = 3032.613878 C = 4189.851106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.100 4.100 5 C 0.263 3.737 6 H 0.030 0.970 7 C -0.553 4.553 8 H 0.036 0.964 9 C 0.045 3.955 10 N -0.889 5.889 11 Si 0.942 3.058 12 H -0.280 1.280 13 H -0.271 1.271 14 H -0.284 1.284 15 N -0.660 5.660 16 C 0.582 3.418 17 O -0.578 6.578 18 C -0.114 4.114 19 C 0.036 3.964 20 N -0.519 5.519 21 C 0.212 3.788 22 O -0.196 6.196 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.266 0.734 33 H 0.399 0.601 34 H 0.199 0.801 35 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 2.884 9.437 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.192 4.192 4 C -0.139 4.139 5 C 0.162 3.838 6 H 0.048 0.952 7 C -0.592 4.592 8 H 0.055 0.945 9 C -0.157 4.157 10 N -0.526 5.526 11 Si 0.769 3.231 12 H -0.205 1.205 13 H -0.196 1.196 14 H -0.210 1.210 15 N -0.305 5.305 16 C 0.366 3.634 17 O -0.462 6.462 18 C -0.169 4.169 19 C -0.106 4.106 20 N -0.247 5.247 21 C -0.013 4.013 22 O -0.082 6.082 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.215 0.785 35 H 0.324 0.676 Dipole moment (debyes) X Y Z Total from point charges 1.412 2.249 9.519 9.882 hybrid contribution 0.688 -0.142 -1.415 1.580 sum 2.100 2.106 8.103 8.632 Atomic orbital electron populations 1.21818 0.95558 1.00656 1.01766 1.21167 0.95750 0.96692 0.97995 1.21739 1.00659 0.95023 1.01804 1.21699 1.02747 0.93491 0.95947 1.18722 0.91426 0.90565 0.83121 0.95150 1.21665 0.93275 1.37274 1.07000 0.94523 1.25438 0.96341 0.94840 0.99129 1.69834 1.01255 1.43285 1.38247 0.85760 0.77808 0.78676 0.80868 1.20546 1.19584 1.20993 1.46445 1.25280 1.26289 1.32504 1.16752 0.84242 0.81456 0.80929 1.90755 1.24669 1.65655 1.65084 1.23343 0.89252 1.02159 1.02178 1.23657 1.00404 0.94683 0.91898 1.70423 1.04227 1.27123 1.22939 1.29628 1.00186 0.83092 0.88372 1.84540 1.34182 1.49595 1.39864 0.92550 0.94717 0.91726 0.92814 0.91682 0.93155 0.92747 0.93469 0.90316 0.92440 0.76662 0.78458 0.67622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.95 71.98 0.64 -3.87 16 2 C -0.10 -3.33 2.86 -10.79 -0.03 -3.36 16 3 C -0.13 -3.79 9.19 71.98 0.66 -3.13 16 4 C -0.10 -4.26 3.92 30.59 0.12 -4.14 16 5 C 0.26 12.82 2.01 44.24 0.09 12.91 16 6 H 0.03 1.56 5.78 -2.39 -0.01 1.55 16 7 C -0.55 -30.40 8.87 25.60 0.23 -30.17 16 8 H 0.04 2.13 7.81 -2.91 -0.02 2.10 16 9 C 0.05 2.38 5.23 84.65 0.44 2.82 16 10 N -0.89 -45.28 10.62 21.45 0.23 -45.06 16 11 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 N -0.66 -30.26 3.85 -450.03 -1.73 -31.99 16 16 C 0.58 26.74 7.75 86.46 0.67 27.41 16 17 O -0.58 -30.02 16.55 -4.31 -0.07 -30.09 16 18 C -0.11 -4.30 7.18 24.05 0.17 -4.13 16 19 C 0.04 1.20 11.66 83.97 0.98 2.18 16 20 N -0.52 -15.06 11.26 -315.10 -3.55 -18.60 16 21 C 0.21 4.84 13.21 130.42 1.72 6.56 16 22 O -0.20 -6.17 10.57 -7.06 -0.07 -6.24 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.26 6.46 -2.39 -0.02 1.25 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.89 7.62 -2.39 -0.02 1.87 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 3.62 6.22 -2.38 -0.01 3.61 16 32 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 33 H 0.40 17.62 8.08 -92.71 -0.75 16.87 16 34 H 0.20 6.19 8.06 -2.91 -0.02 6.17 16 35 H 0.31 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -64.40 299.80 2.88 -61.52 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.35 Total: 22.51 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.70 Total: 3.07 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -5.05 Total: -95.65 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.15 Total: -36.34 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.40 2.88 -61.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259927394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.956 kcal (2) G-P(sol) polarization free energy of solvation -64.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds