Wall clock time and date at job start Mon Mar 30 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 C 1.52994 * 109.47636 * 120.00212 * 2 1 3 5 5 H 1.09004 * 109.46998 * 53.32260 * 4 2 1 6 6 C 1.50696 * 109.47463 * 173.32736 * 4 2 1 7 7 H 1.07999 * 120.00489 * 114.79573 * 6 4 2 8 8 C 1.37882 * 119.99867 * 294.79383 * 6 4 2 9 9 N 1.31513 * 119.99815 * 3.74136 * 8 6 4 10 10 Si 1.86800 * 120.00013 * 183.74139 * 8 6 4 11 11 H 1.48492 * 109.47160 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47101 * 120.00280 * 10 8 6 13 13 H 1.48504 * 109.46933 * 240.00057 * 10 8 6 14 14 C 1.53003 * 109.46981 * 293.32869 * 4 2 1 15 15 N 1.46496 * 109.47184 * 68.20744 * 14 4 2 16 16 C 1.34785 * 119.99547 * 184.81748 * 15 14 4 17 17 O 1.21494 * 120.00225 * 0.02562 * 16 15 14 18 18 C 1.48333 * 119.99498 * 179.72936 * 16 15 14 19 19 C 1.42272 * 126.93746 * 180.02562 * 18 16 15 20 20 C 1.35307 * 103.92348 * 179.97438 * 19 18 16 21 21 O 1.34016 * 106.67001 * 0.02562 * 20 19 18 22 22 N 1.20906 * 111.84534 * 359.70230 * 21 20 19 23 23 H 1.08993 * 109.46896 * 310.52659 * 1 2 3 24 24 H 1.08995 * 109.47278 * 70.53310 * 1 2 3 25 25 H 1.09003 * 109.46516 * 190.53217 * 1 2 3 26 26 H 1.09003 * 109.46737 * 240.00263 * 2 1 3 27 27 H 1.09006 * 109.47166 * 183.69460 * 3 2 1 28 28 H 1.09000 * 109.47328 * 303.68810 * 3 2 1 29 29 H 1.09000 * 109.47490 * 63.69383 * 3 2 1 30 30 H 0.97003 * 119.99981 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.46899 * 308.20777 * 14 4 2 32 32 H 1.09003 * 109.47082 * 188.21406 * 14 4 2 33 33 H 0.96994 * 120.00589 * 4.82257 * 15 14 4 34 34 H 1.07999 * 128.03830 * 0.02562 * 19 18 16 35 35 H 1.08005 * 126.66875 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.5826 -1.7087 1.3109 6 6 3.5380 -0.8658 1.1693 7 1 4.1687 -0.3537 1.8809 8 6 4.1034 -1.6519 0.1878 9 7 3.3409 -2.2162 -0.7232 10 14 5.9524 -1.9155 0.1519 11 1 6.5794 -1.1782 1.2780 12 1 6.2485 -3.3647 0.2838 13 1 6.4990 -1.4137 -1.1345 14 6 1.6716 0.0902 2.4928 15 7 0.2188 0.0656 2.6791 16 6 -0.3472 0.7962 3.6602 17 8 0.3474 1.4754 4.3898 18 6 -1.8189 0.7759 3.8451 19 6 -2.5673 1.4853 4.8253 20 6 -3.8493 1.1333 4.5737 21 8 -3.8193 0.2906 3.5321 22 7 -2.6922 0.1056 3.1354 23 1 -0.3633 0.6677 0.7811 24 1 -0.3633 0.3425 -0.9689 25 1 -0.3632 -1.0104 0.1879 26 1 1.8933 -0.5138 -0.8901 27 1 3.1280 1.4433 -0.0662 28 1 1.6237 1.9751 -0.8551 29 1 1.7317 1.9369 0.9212 30 1 3.7387 -2.7690 -1.4139 31 1 2.0043 1.1205 2.3661 32 1 2.1575 -0.3435 3.3668 33 1 -0.3359 -0.4764 2.0966 34 1 -2.1980 2.1508 5.5915 35 1 -4.7264 1.4661 5.1089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259946248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:37 Heat of formation + Delta-G solvation = 21.544712 kcal Electronic energy + Delta-G solvation = -18793.778296 eV Core-core repulsion = 15795.432051 eV Total energy + Delta-G solvation = -2998.346244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.13326 -39.37577 -36.81754 -34.00509 -33.38507 -32.04616 -31.74321 -28.91213 -26.30474 -25.67231 -23.80218 -23.01734 -21.85919 -20.21570 -19.05836 -18.02139 -17.79812 -16.80875 -15.91043 -15.39917 -15.07749 -14.64282 -14.33654 -13.81884 -13.50450 -13.16754 -13.07721 -12.60549 -12.01670 -11.73504 -11.68635 -11.18134 -11.09184 -10.97078 -10.68415 -10.45905 -10.20529 -10.07835 -9.87839 -9.78484 -9.66447 -9.16574 -8.85509 -8.40990 -8.32620 -6.06731 -4.12052 1.15791 1.66596 3.00612 3.27300 3.35064 3.37324 3.41220 3.43041 4.07173 4.40253 4.70957 4.95025 5.22715 5.25038 5.40245 5.76198 5.97945 6.06113 6.21549 6.31316 6.38944 6.47346 6.63187 6.72679 6.81872 6.85357 6.93036 7.32582 7.45825 7.66701 7.74606 7.85589 7.99627 8.08052 8.30881 8.48102 8.90813 9.52432 11.00121 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.038316 B = 0.005152 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.585421 B = 5433.176219 C = 5682.118624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.093 4.093 3 C -0.133 4.133 4 C 0.044 3.956 5 H 0.035 0.965 6 C -0.509 4.509 7 H 0.059 0.941 8 C 0.065 3.935 9 N -0.887 5.887 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.117 3.883 15 N -0.699 5.699 16 C 0.582 3.418 17 O -0.536 6.536 18 C -0.023 4.023 19 C -0.186 4.186 20 C -0.067 4.067 21 O 0.119 5.881 22 N -0.331 5.331 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.408 0.592 34 H 0.180 0.820 35 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 5.484 6.879 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.111 4.111 3 C -0.190 4.190 4 C 0.026 3.974 5 H 0.053 0.947 6 C -0.548 4.548 7 H 0.077 0.923 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.005 4.005 15 N -0.352 5.352 16 C 0.364 3.636 17 O -0.412 6.412 18 C -0.183 4.183 19 C -0.208 4.208 20 C -0.148 4.148 21 O 0.044 5.956 22 N -0.032 5.032 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.197 0.803 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.478 5.004 6.164 14.790 hybrid contribution 0.753 0.138 0.333 0.835 sum -11.725 5.141 6.497 14.357 Atomic orbital electron populations 1.22235 0.99171 1.00024 0.99933 1.21201 0.91220 0.95291 1.03428 1.21784 1.01654 0.96985 0.98568 1.18992 0.96647 0.93782 0.88024 0.94721 1.20980 0.90584 1.29025 1.14210 0.92275 1.24914 0.97981 0.95497 0.95319 1.69901 1.34874 1.32628 1.15088 0.86537 0.85613 0.77939 0.77951 1.19682 1.21032 1.21068 1.22045 0.75866 1.02045 1.00513 1.46734 1.10958 1.45690 1.31850 1.17004 0.83630 0.81156 0.81765 1.90763 1.61972 1.42566 1.45919 1.23886 0.97022 1.00262 0.97115 1.22786 0.91719 1.04031 1.02264 1.26016 1.00476 0.95731 0.92561 1.84804 1.23934 1.49013 1.37879 1.74219 0.90190 1.19080 1.19711 0.93522 0.94423 0.93609 0.88237 0.92231 0.95489 0.94314 0.92960 0.91167 0.92391 0.75317 0.80297 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 7.62 37.16 0.28 -2.72 16 2 C -0.09 -2.06 2.57 -90.62 -0.23 -2.29 16 3 C -0.13 -2.76 8.55 37.16 0.32 -2.44 16 4 C 0.04 1.05 1.69 -91.77 -0.16 0.89 16 5 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 6 C -0.51 -13.30 7.61 -34.44 -0.26 -13.56 16 7 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 8 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 9 N -0.89 -24.35 11.54 55.43 0.64 -23.71 16 10 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.12 2.49 4.70 -4.04 -0.02 2.47 16 15 N -0.70 -13.29 3.84 -61.09 -0.23 -13.53 16 16 C 0.58 10.81 7.85 -12.10 -0.09 10.72 16 17 O -0.54 -11.24 16.95 5.37 0.09 -11.15 16 18 C -0.02 -0.35 7.19 -82.52 -0.59 -0.95 16 19 C -0.19 -2.09 10.99 -39.08 -0.43 -2.52 16 20 C -0.07 -0.54 12.28 29.69 0.36 -0.18 16 21 O 0.12 1.34 11.18 17.24 0.19 1.53 16 22 N -0.33 -4.81 11.84 33.29 0.39 -4.41 16 23 H 0.05 0.86 5.82 -51.93 -0.30 0.55 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.86 7.58 -51.93 -0.39 0.47 16 26 H 0.10 2.54 6.23 -51.93 -0.32 2.21 16 27 H 0.06 1.31 7.55 -51.93 -0.39 0.92 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.78 5.93 -51.93 -0.31 0.47 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.07 1.53 5.77 -51.93 -0.30 1.23 16 32 H 0.06 1.28 8.12 -51.93 -0.42 0.85 16 33 H 0.41 7.45 5.44 -40.82 -0.22 7.23 16 34 H 0.18 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.22 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -29.77 291.60 -4.78 -34.55 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.32 Total: 5.52 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.92 Total: -8.96 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.80 Total: -41.65 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.28 Total: -9.62 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.77 -4.78 -34.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds