Wall clock time and date at job start Mon Mar 30 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47165 * 2 1 4 4 C 1.35315 * 126.66220 * 90.33510 * 3 2 1 5 5 C 1.42280 * 103.91938 * 180.10585 * 4 3 2 6 6 C 1.48326 * 126.93813 * 179.85414 * 5 4 3 7 7 O 1.21500 * 120.00355 * 353.62985 * 6 5 4 8 8 N 1.34771 * 120.00451 * 173.35290 * 6 5 4 9 9 C 1.46504 * 119.99534 * 3.72713 * 8 6 5 10 10 C 1.46496 * 120.00477 * 183.73393 * 8 6 5 11 11 C 1.52996 * 109.47457 * 89.99853 * 10 8 6 12 12 C 1.50697 * 109.47360 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00133 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00480 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99301 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00212 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46962 * 90.00100 * 16 14 12 18 18 H 1.48499 * 109.47087 * 210.00054 * 16 14 12 19 19 H 1.48494 * 109.47375 * 330.00374 * 16 14 12 20 20 N 1.30981 * 106.11884 * 359.58942 * 5 4 3 21 21 O 1.20894 * 111.44621 * 0.26278 * 20 5 4 22 22 H 1.08998 * 109.47326 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46663 * 299.99610 * 1 2 3 24 24 H 1.09000 * 109.46980 * 59.99437 * 1 2 3 25 25 H 1.09005 * 109.46663 * 240.00390 * 2 1 3 26 26 H 1.09000 * 109.46980 * 120.00563 * 2 1 3 27 27 H 1.07999 * 128.04695 * 359.96180 * 4 3 2 28 28 H 1.09003 * 109.47234 * 84.25642 * 9 8 6 29 29 H 1.08999 * 109.47183 * 204.25406 * 9 8 6 30 30 H 1.08998 * 109.47432 * 324.25942 * 9 8 6 31 31 H 1.09011 * 109.47113 * 209.99962 * 10 8 6 32 32 H 1.08995 * 109.46870 * 329.99219 * 10 8 6 33 33 H 1.08998 * 109.47307 * 299.99934 * 11 10 8 34 34 H 1.09003 * 109.47429 * 60.00099 * 11 10 8 35 35 H 0.97005 * 119.99561 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3077 2.1804 1.0854 5 6 2.7396 3.4195 0.5354 6 6 3.1667 4.6265 1.2842 7 8 3.0607 4.6601 2.4941 8 7 3.6776 5.6840 0.6231 9 6 3.7357 5.6743 -0.8407 10 6 4.1750 6.8431 1.3682 11 6 5.6594 6.6482 1.6835 12 6 6.1711 7.8408 2.4494 13 1 5.5044 8.6566 2.6872 14 6 7.4905 7.8907 2.8468 15 7 8.3025 6.8976 2.5568 16 14 8.1246 9.3688 3.7967 17 1 7.9538 9.1318 5.2528 18 1 9.5642 9.5715 3.4938 19 1 7.3600 10.5780 3.3991 20 7 2.6895 3.2770 -0.7657 21 8 2.2996 2.1752 -1.0750 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.2179 1.9100 2.1272 28 1 2.7779 6.0025 -1.2446 29 1 4.5225 6.3492 -1.1777 30 1 3.9498 4.6639 -1.1892 31 1 4.0464 7.7437 0.7675 32 1 3.6161 6.9441 2.2985 33 1 5.7880 5.7478 2.2842 34 1 6.2183 6.5472 0.7532 35 1 9.2306 6.9325 2.8367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:58 Heat of formation + Delta-G solvation = 23.156032 kcal Electronic energy + Delta-G solvation = -18166.938905 eV Core-core repulsion = 15168.662532 eV Total energy + Delta-G solvation = -2998.276372 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.05846 -39.31889 -35.53420 -35.04684 -33.93430 -32.95104 -30.48758 -29.83517 -26.53539 -25.69739 -24.37089 -23.62570 -22.28653 -20.91230 -18.75538 -17.81262 -17.32543 -16.63247 -16.46969 -15.28870 -14.93387 -14.82901 -14.48423 -14.31960 -13.58016 -13.28589 -12.91694 -12.80854 -12.70772 -12.28230 -12.27038 -12.02025 -11.49341 -11.34756 -11.02329 -10.91884 -10.68370 -10.36017 -9.95557 -9.90279 -9.75495 -9.49272 -9.17338 -8.35861 -8.06618 -6.00847 -4.04243 1.18818 1.71497 2.87046 3.24325 3.33267 3.39097 3.42548 3.49644 4.05684 4.34606 4.47289 4.70961 4.83367 4.94752 5.03297 5.21146 5.35285 5.39529 5.46112 5.58336 5.64652 5.76367 5.79086 5.88316 6.07430 6.17789 6.50657 6.81140 6.87686 7.54613 7.68208 7.86932 7.98206 8.04217 8.33406 8.48939 9.02087 9.59568 11.10715 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.046515 B = 0.004068 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.817432 B = 6881.995287 C = 7013.351207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.037 4.037 4 C -0.181 4.181 5 C -0.011 4.011 6 C 0.586 3.414 7 O -0.523 6.523 8 N -0.593 5.593 9 C 0.073 3.927 10 C 0.116 3.884 11 C 0.012 3.988 12 C -0.521 4.521 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.330 5.330 21 O 0.111 5.889 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.179 0.821 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 -13.242 -8.225 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.100 4.100 4 C -0.203 4.203 5 C -0.170 4.170 6 C 0.370 3.630 7 O -0.398 6.398 8 N -0.325 5.325 9 C -0.070 4.070 10 C -0.004 4.004 11 C -0.026 4.026 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.034 5.034 21 O 0.039 5.961 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.196 0.804 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.897 -12.385 -8.559 20.489 hybrid contribution 0.486 0.492 1.173 1.361 sum -13.412 -11.893 -7.386 19.388 Atomic orbital electron populations 1.21809 0.93497 1.02679 1.02967 1.20123 0.96609 0.86263 1.04899 1.24453 1.02814 0.97123 0.85660 1.22438 1.04672 0.91740 1.01463 1.23714 1.05193 0.98198 0.89942 1.16961 0.78568 0.81157 0.86277 1.90792 1.55592 1.80753 1.12685 1.47979 1.59102 1.17832 1.07564 1.22053 1.01627 1.03913 0.79414 1.22005 0.98619 0.84287 0.95492 1.19401 0.88223 0.97901 0.97026 1.21081 0.95139 1.04070 1.35689 0.92403 1.25012 0.96945 0.96324 0.96058 1.69984 1.05358 1.31401 1.46477 0.86531 0.77951 0.82844 0.80303 1.20562 1.21216 1.19796 1.74332 1.14465 0.98946 1.15693 1.84773 1.60034 1.17708 1.33631 0.91262 0.91963 0.92030 0.89210 0.88341 0.80384 0.92953 0.90490 0.89871 0.91298 0.90546 0.96046 0.96460 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.04 -0.25 6.50 -27.88 -0.18 -0.44 16 3 C -0.04 -0.40 6.73 -35.35 -0.24 -0.64 16 4 C -0.18 -2.42 10.93 -39.07 -0.43 -2.85 16 5 C -0.01 -0.19 6.87 -82.53 -0.57 -0.76 16 6 C 0.59 11.99 7.70 -12.11 -0.09 11.90 16 7 O -0.52 -12.28 16.52 5.37 0.09 -12.19 16 8 N -0.59 -11.84 2.87 -182.51 -0.52 -12.36 16 9 C 0.07 1.19 9.67 59.85 0.58 1.76 16 10 C 0.12 2.59 5.35 -4.05 -0.02 2.57 16 11 C 0.01 0.34 5.30 -27.89 -0.15 0.19 16 12 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 16 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 N -0.33 -4.99 8.70 33.29 0.29 -4.70 16 21 O 0.11 1.39 11.18 17.24 0.19 1.59 16 22 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.18 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 30 H 0.08 1.33 5.35 -51.93 -0.28 1.05 16 31 H 0.07 1.39 8.07 -51.92 -0.42 0.97 16 32 H 0.08 1.78 7.38 -51.93 -0.38 1.39 16 33 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -34.08 304.98 -5.63 -39.70 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.84 Total: -4.33 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.14 Total: -2.53 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.50 Total: -43.84 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.28 Total: -10.60 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.08 -5.63 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.858 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds