Wall clock time and date at job start Mon Mar 30 2020 04:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47007 * 2 1 4 4 C 1.53009 * 109.46769 * 119.99734 * 2 1 3 5 5 H 1.09002 * 109.46568 * 186.62053 * 4 2 1 6 6 C 1.50700 * 109.46981 * 66.62644 * 4 2 1 7 7 H 1.07997 * 120.00190 * 244.80937 * 6 4 2 8 8 C 1.37878 * 120.00040 * 64.80800 * 6 4 2 9 9 N 1.31519 * 120.00021 * 200.69014 * 8 6 4 10 10 Si 1.86805 * 120.00199 * 20.68922 * 8 6 4 11 11 H 1.48489 * 109.47187 * 90.38540 * 10 8 6 12 12 H 1.48500 * 109.47155 * 210.39292 * 10 8 6 13 13 H 1.48503 * 109.46960 * 330.38640 * 10 8 6 14 14 C 1.52991 * 109.47279 * 306.62323 * 4 2 1 15 15 N 1.46495 * 109.47254 * 292.62576 * 14 4 2 16 16 C 1.34781 * 119.99857 * 174.83425 * 15 14 4 17 17 O 1.21682 * 120.00092 * 359.97438 * 16 15 14 18 18 C 1.46724 * 119.99988 * 180.02562 * 16 15 14 19 19 C 1.36342 * 126.64782 * 179.97438 * 18 16 15 20 20 N 1.33689 * 107.45708 * 179.73253 * 19 18 16 21 21 C 1.30614 * 108.99350 * 0.24731 * 20 19 18 22 22 O 1.33664 * 109.15552 * 359.97438 * 21 20 19 23 23 H 1.08996 * 109.47052 * 305.73806 * 1 2 3 24 24 H 1.08997 * 109.46662 * 65.73768 * 1 2 3 25 25 H 1.09004 * 109.46769 * 185.73622 * 1 2 3 26 26 H 1.08995 * 109.47198 * 239.99684 * 2 1 3 27 27 H 1.09003 * 109.47162 * 171.70689 * 3 2 1 28 28 H 1.08996 * 109.47145 * 291.71056 * 3 2 1 29 29 H 1.09005 * 109.47525 * 51.71169 * 3 2 1 30 30 H 0.96996 * 119.99934 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.47267 * 172.62368 * 14 4 2 32 32 H 1.09005 * 109.47281 * 52.62643 * 14 4 2 33 33 H 0.97001 * 120.00506 * 354.83427 * 15 14 4 34 34 H 1.08000 * 126.27026 * 359.97438 * 19 18 16 35 35 H 1.07999 * 125.42102 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2494 5 1 3.1235 -0.6198 1.3106 6 6 1.6759 -2.1815 1.1702 7 1 0.9877 -2.6061 1.8860 8 6 2.2214 -2.9754 0.1837 9 7 1.6329 -4.1021 -0.1541 10 14 3.7964 -2.4510 -0.6730 11 1 4.9651 -3.0016 0.0590 12 1 3.7973 -2.9659 -2.0659 13 1 3.8787 -0.9684 -0.6934 14 6 1.3987 -0.1025 2.4929 15 7 1.8921 1.2658 2.6673 16 6 1.3845 2.0461 3.6420 17 8 0.5161 1.6142 4.3769 18 6 1.8782 3.4167 3.8164 19 6 1.4635 4.3184 4.7512 20 7 2.1692 5.4391 4.5683 21 6 2.9886 5.2666 3.5659 22 8 2.8320 4.0317 3.0789 23 1 -0.3633 0.6002 0.8341 24 1 -0.3632 0.4223 -0.9369 25 1 -0.3633 -1.0226 0.1027 26 1 1.8934 -0.5139 -0.8899 27 1 3.1199 1.4461 0.1482 28 1 1.8027 1.9117 -0.9547 29 1 1.5608 1.9973 0.8066 30 1 2.0165 -4.6604 -0.8483 31 1 1.6579 -0.6966 3.3693 32 1 0.3154 -0.0855 2.3729 33 1 2.5841 1.6103 2.0813 34 1 0.7066 4.1557 5.5042 35 1 3.6829 6.0040 3.1909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:38 Heat of formation + Delta-G solvation = -11.202308 kcal Electronic energy + Delta-G solvation = -18893.907740 eV Core-core repulsion = 15894.141478 eV Total energy + Delta-G solvation = -2999.766262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.55166 -39.51709 -37.12880 -35.12180 -33.48090 -32.22111 -30.73121 -29.17720 -26.55404 -25.68396 -23.56913 -22.77800 -21.79638 -20.56391 -19.40908 -18.13384 -16.97170 -16.95384 -16.37234 -15.53255 -15.44495 -14.54764 -14.37520 -13.97252 -13.70398 -13.39987 -13.37485 -12.76166 -12.56498 -11.90389 -11.68409 -11.54974 -11.38774 -11.05100 -11.03402 -10.53535 -10.41638 -10.14120 -10.10002 -9.80600 -9.41114 -9.29467 -9.19446 -8.55479 -8.40375 -6.21224 -4.13107 0.74738 2.30737 2.35872 3.18494 3.21726 3.31726 3.33737 3.42737 3.98055 4.34820 4.80826 4.86235 5.07771 5.34918 5.43417 5.60554 5.71664 5.85178 6.00962 6.02564 6.15008 6.24836 6.41023 6.47479 6.47836 6.58013 6.61062 7.01231 7.14794 7.24744 7.29935 7.33258 7.67407 7.69582 8.21930 8.39677 8.88524 9.45393 10.91227 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034003 B = 0.005722 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.270663 B = 4892.092286 C = 5152.186624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C -0.165 4.165 4 C 0.015 3.985 5 H 0.028 0.972 6 C -0.521 4.521 7 H 0.076 0.924 8 C 0.084 3.916 9 N -0.882 5.882 10 Si 0.860 3.140 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.257 1.257 14 C 0.127 3.873 15 N -0.707 5.707 16 C 0.593 3.407 17 O -0.521 6.521 18 C -0.097 4.097 19 C 0.041 3.959 20 N -0.495 5.495 21 C 0.190 3.810 22 O -0.191 6.191 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.264 0.736 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.406 0.594 34 H 0.196 0.804 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 16.170 2.928 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 C -0.223 4.223 4 C -0.004 4.004 5 H 0.046 0.954 6 C -0.559 4.559 7 H 0.094 0.906 8 C -0.120 4.120 9 N -0.518 5.518 10 Si 0.686 3.314 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.181 1.181 14 C 0.005 3.995 15 N -0.360 5.360 16 C 0.376 3.624 17 O -0.400 6.400 18 C -0.153 4.153 19 C -0.102 4.102 20 N -0.224 5.224 21 C -0.035 4.035 22 O -0.076 6.076 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.244 0.756 34 H 0.213 0.787 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.925 16.171 3.588 16.820 hybrid contribution 1.412 -0.158 -1.290 1.919 sum 4.337 16.012 2.298 16.748 Atomic orbital electron populations 1.21751 0.95749 1.02796 0.98862 1.21468 0.96045 0.93235 1.00460 1.22341 1.00072 0.98830 1.01037 1.19367 0.95452 0.96210 0.89378 0.95378 1.20651 1.28862 0.90898 1.15463 0.90600 1.24872 0.96714 0.94923 0.95502 1.70022 1.37585 1.14352 1.29821 0.87180 0.85262 0.79999 0.78912 1.20566 1.21461 1.18087 1.21819 0.99840 0.77959 0.99843 1.46829 1.40795 1.16011 1.32353 1.16470 0.82510 0.81439 0.81939 1.90887 1.31289 1.72268 1.45545 1.23579 0.96393 0.97219 0.98069 1.23578 1.00000 0.87335 0.99244 1.70425 1.08357 1.26693 1.16890 1.28363 0.99189 0.84398 0.91527 1.84522 1.46687 1.26224 1.50191 0.93972 0.94994 0.90720 0.91884 0.93548 0.93763 0.92300 0.92564 0.91611 0.90568 0.75572 0.78664 0.72997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.37 37.16 0.31 -2.25 16 2 C -0.09 -1.83 2.08 -90.62 -0.19 -2.02 16 3 C -0.17 -2.65 7.63 37.15 0.28 -2.36 16 4 C 0.02 0.32 1.32 -91.77 -0.12 0.20 16 5 H 0.03 0.60 6.58 -51.93 -0.34 0.26 16 6 C -0.52 -13.44 7.91 -34.44 -0.27 -13.71 16 7 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.08 2.24 5.24 -17.82 -0.09 2.15 16 9 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16 10 Si 0.86 19.99 25.93 -169.99 -4.41 15.58 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.26 -5.54 5.86 56.52 0.33 -5.21 16 14 C 0.13 2.44 4.68 -4.05 -0.02 2.43 16 15 N -0.71 -11.60 3.80 -61.61 -0.23 -11.84 16 16 C 0.59 9.74 7.79 -12.83 -0.10 9.64 16 17 O -0.52 -10.02 16.89 5.21 0.09 -9.93 16 18 C -0.10 -1.33 7.18 -36.84 -0.26 -1.60 16 19 C 0.04 0.52 11.66 -17.43 -0.20 0.32 16 20 N -0.50 -5.81 11.26 -14.67 -0.17 -5.97 16 21 C 0.19 1.71 13.21 52.24 0.69 2.40 16 22 O -0.19 -2.20 10.57 4.42 0.05 -2.16 16 23 H 0.04 0.76 6.50 -51.93 -0.34 0.42 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.61 7.27 -51.93 -0.38 1.23 16 26 H 0.06 1.35 5.53 -51.93 -0.29 1.07 16 27 H 0.05 0.70 7.74 -51.93 -0.40 0.30 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.89 5.57 -51.93 -0.29 0.60 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 32 H 0.08 1.53 6.02 -51.93 -0.31 1.22 16 33 H 0.41 6.05 5.44 -40.82 -0.22 5.82 16 34 H 0.20 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.25 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 287.02 15.07 4.33 4.33 Total: -1.00 -30.40 287.02 -3.86 -34.26 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.31 Total: 5.22 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 0.02 Total: -4.81 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.37 Total: -42.49 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.13 Total: -12.09 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.41 Total: 15.58 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.40 -3.86 -34.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.058 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds