Wall clock time and date at job start Mon Mar 30 2020 04:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46701 * 2 1 4 4 C 1.52998 * 109.47204 * 119.99854 * 2 1 3 5 5 H 1.08999 * 109.47225 * 52.72350 * 4 2 1 6 6 C 1.50691 * 109.47319 * 172.72954 * 4 2 1 7 7 H 1.07998 * 120.00260 * 115.52924 * 6 4 2 8 8 C 1.37882 * 120.00033 * 295.53496 * 6 4 2 9 9 N 1.31514 * 119.99894 * 173.50124 * 8 6 4 10 10 Si 1.86802 * 119.99716 * 353.49608 * 8 6 4 11 11 H 1.48498 * 109.46882 * 92.62274 * 10 8 6 12 12 H 1.48501 * 109.46981 * 212.62166 * 10 8 6 13 13 H 1.48505 * 109.47229 * 332.62282 * 10 8 6 14 14 C 1.53004 * 109.46885 * 292.72964 * 4 2 1 15 15 N 1.46496 * 109.47307 * 67.86635 * 14 4 2 16 16 C 1.34776 * 120.00484 * 186.95172 * 15 14 4 17 17 O 1.21690 * 119.99394 * 359.97438 * 16 15 14 18 18 C 1.46721 * 120.00807 * 179.97438 * 16 15 14 19 19 C 1.36332 * 126.64623 * 179.97438 * 18 16 15 20 20 N 1.33698 * 107.44962 * 179.79066 * 19 18 16 21 21 C 1.30613 * 108.99724 * 0.38638 * 20 19 18 22 22 O 1.33670 * 109.15350 * 359.61132 * 21 20 19 23 23 H 1.08998 * 109.47412 * 309.89861 * 1 2 3 24 24 H 1.09002 * 109.47026 * 69.90089 * 1 2 3 25 25 H 1.09003 * 109.46909 * 189.89336 * 1 2 3 26 26 H 1.08996 * 109.47141 * 239.99800 * 2 1 3 27 27 H 1.09004 * 109.47132 * 173.87262 * 3 2 1 28 28 H 1.09001 * 109.47373 * 293.86793 * 3 2 1 29 29 H 1.08999 * 109.47537 * 53.87418 * 3 2 1 30 30 H 0.97008 * 119.99520 * 179.97438 * 9 8 6 31 31 H 1.09002 * 109.47192 * 307.86243 * 14 4 2 32 32 H 1.09003 * 109.46839 * 187.85928 * 14 4 2 33 33 H 0.97007 * 119.99932 * 6.94460 * 15 14 4 34 34 H 1.08000 * 126.27435 * 0.02562 * 19 18 16 35 35 H 1.08001 * 125.42363 * 179.87064 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5744 -1.7044 1.3168 6 6 3.5362 -0.8788 1.1627 7 1 4.1741 -0.3791 1.8766 8 6 4.0908 -1.6610 0.1718 9 7 5.3962 -1.6973 0.0162 10 14 2.9880 -2.6691 -0.9493 11 1 2.6709 -1.8832 -2.1687 12 1 3.6867 -3.9214 -1.3352 13 1 1.7298 -3.0042 -0.2352 14 6 1.6846 0.0978 2.4918 15 7 0.2318 0.0931 2.6806 16 6 -0.3266 0.8662 3.6330 17 8 0.3762 1.5678 4.3363 18 6 -1.7816 0.8619 3.8218 19 6 -2.4853 1.5856 4.7381 20 7 -3.7793 1.2937 4.5713 21 6 -3.8976 0.4226 3.6053 22 8 -2.6849 0.1383 3.1202 23 1 -0.3634 0.6592 0.7884 24 1 -0.3633 0.3532 -0.9651 25 1 -0.3633 -1.0124 0.1766 26 1 1.8934 -0.5138 -0.8899 27 1 3.1244 1.4446 0.1097 28 1 1.7690 1.9237 -0.9398 29 1 1.5898 1.9871 0.8300 30 1 5.7864 -2.2479 -0.6807 31 1 2.0308 1.1232 2.3624 32 1 2.1659 -0.3407 3.3659 33 1 -0.3283 -0.4665 2.1201 34 1 -2.0734 2.2721 5.4630 35 1 -4.8275 0.0025 3.2516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:40 Heat of formation + Delta-G solvation = -36.726389 kcal Electronic energy + Delta-G solvation = -18910.278153 eV Core-core repulsion = 15909.405084 eV Total energy + Delta-G solvation = -3000.873069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.42398 -40.89469 -38.70581 -36.03444 -35.02142 -34.12325 -31.82126 -30.72473 -28.03210 -27.31571 -24.79123 -23.71762 -23.36428 -21.79983 -20.93128 -19.45624 -18.45560 -17.89515 -17.72550 -17.07891 -16.87974 -16.26880 -15.42714 -15.26429 -15.10243 -14.93525 -14.65210 -14.45350 -14.15262 -13.39933 -13.17263 -12.90226 -12.82729 -12.55657 -12.33169 -12.07540 -11.98921 -11.90768 -11.52992 -11.39936 -11.03274 -10.93765 -10.66655 -10.31852 -9.91152 -8.26762 -6.30239 -0.20858 1.34346 1.38814 1.42712 1.44209 1.48060 2.00189 2.21699 2.35579 3.08005 3.29537 3.77238 3.88809 4.02433 4.19265 4.31523 4.44768 4.51788 4.60205 4.62726 4.73556 4.86198 4.90384 5.06559 5.09072 5.18605 5.23755 5.37800 5.46267 5.55314 5.62655 5.76933 6.25225 6.32947 6.56314 6.74965 6.96466 7.33864 8.89692 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.034675 B = 0.005757 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.310746 B = 4862.890833 C = 5159.746562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.129 4.129 4 C 0.011 3.989 5 H 0.041 0.959 6 C -0.509 4.509 7 H 0.033 0.967 8 C 0.019 3.981 9 N -0.948 5.948 10 Si 0.936 3.064 11 H -0.266 1.266 12 H -0.299 1.299 13 H -0.235 1.235 14 C 0.143 3.857 15 N -0.700 5.700 16 C 0.598 3.402 17 O -0.558 6.558 18 C -0.125 4.125 19 C 0.052 3.948 20 N -0.525 5.525 21 C 0.227 3.773 22 O -0.192 6.192 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.415 0.585 34 H 0.201 0.799 35 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.907 2.026 1.862 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.122 4.122 3 C -0.186 4.186 4 C -0.008 4.008 5 H 0.059 0.941 6 C -0.547 4.547 7 H 0.052 0.948 8 C -0.178 4.178 9 N -0.588 5.588 10 Si 0.761 3.239 11 H -0.192 1.192 12 H -0.226 1.226 13 H -0.158 1.158 14 C 0.020 3.980 15 N -0.352 5.352 16 C 0.384 3.616 17 O -0.439 6.439 18 C -0.180 4.180 19 C -0.090 4.090 20 N -0.253 5.253 21 C 0.003 3.997 22 O -0.079 6.079 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.255 0.745 34 H 0.218 0.782 35 H 0.324 0.676 Dipole moment (debyes) X Y Z Total from point charges -20.747 2.626 2.526 21.065 hybrid contribution 0.863 -0.970 -1.072 1.683 sum -19.885 1.656 1.454 20.007 Atomic orbital electron populations 1.22219 0.94501 1.02017 1.02728 1.21418 0.95623 0.96894 0.98217 1.21671 1.00720 0.95643 1.00609 1.19407 0.94856 0.95053 0.91454 0.94109 1.21002 0.90996 1.29162 1.13579 0.94820 1.25763 0.95908 0.97551 0.98622 1.70064 1.12528 1.41530 1.34672 0.85955 0.80349 0.77768 0.79806 1.19206 1.22647 1.15787 1.21346 0.77741 1.00859 0.98091 1.46465 1.09512 1.44071 1.35199 1.16658 0.83877 0.80412 0.80632 1.90868 1.61495 1.43860 1.47725 1.22829 0.90560 1.03508 1.01114 1.23768 0.88115 0.98907 0.98228 1.70504 1.19043 1.16559 1.19179 1.29692 0.88736 0.92077 0.89235 1.84524 1.17711 1.54186 1.51448 0.91411 0.91637 0.91886 0.93632 0.94318 0.92654 0.92910 0.92641 0.91682 0.93384 0.74453 0.78249 0.67553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 7.64 71.98 0.55 -3.81 16 2 C -0.10 -3.84 2.26 -10.79 -0.02 -3.86 16 3 C -0.13 -4.78 8.34 71.98 0.60 -4.18 16 4 C 0.01 0.48 1.33 -11.54 -0.02 0.47 16 5 H 0.04 1.68 6.57 -2.39 -0.02 1.66 16 6 C -0.51 -27.37 8.05 25.60 0.21 -27.17 16 7 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 8 C 0.02 1.05 5.42 84.66 0.46 1.51 16 9 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 10 Si 0.94 41.89 24.93 68.60 1.71 43.60 16 11 H -0.27 -11.43 6.85 99.48 0.68 -10.75 16 12 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 13 H -0.23 -9.33 6.31 99.48 0.63 -8.70 16 14 C 0.14 5.52 4.69 86.38 0.41 5.93 16 15 N -0.70 -21.83 3.77 -467.03 -1.76 -23.59 16 16 C 0.60 18.97 7.79 86.46 0.67 19.64 16 17 O -0.56 -21.53 16.87 -4.32 -0.07 -21.61 16 18 C -0.12 -3.13 7.18 24.04 0.17 -2.96 16 19 C 0.05 1.21 11.66 83.96 0.98 2.19 16 20 N -0.52 -10.47 11.26 -315.09 -3.55 -14.01 16 21 C 0.23 2.94 13.21 130.42 1.72 4.66 16 22 O -0.19 -3.65 10.57 -7.17 -0.08 -3.73 16 23 H 0.07 1.77 5.72 -2.39 -0.01 1.76 16 24 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.56 7.66 -2.39 -0.02 1.55 16 26 H 0.05 1.86 4.43 -2.39 -0.01 1.85 16 27 H 0.04 1.67 7.29 -2.38 -0.02 1.65 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.83 6.49 -2.39 -0.02 1.82 16 30 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 31 H 0.06 2.67 5.97 -2.39 -0.01 2.66 16 32 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 33 H 0.42 11.09 5.61 -92.70 -0.52 10.57 16 34 H 0.20 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.31 -0.08 8.06 -2.91 -0.02 -0.10 16 Total: -1.00 -70.12 285.75 2.77 -67.35 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.49 Total: 16.99 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.73 Total: -7.57 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -5.01 Total: -95.03 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.15 Total: -25.34 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.71 Total: 43.60 kcal Total: -70.12 2.77 -67.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.620 kcal (2) G-P(sol) polarization free energy of solvation -70.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds