Wall clock time and date at job start Mon Mar 30 2020 03:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.50742 * 59.91100 * 9 7 2 11 11 C 1.53096 * 109.50788 * 299.77944 * 9 7 2 12 12 O 1.43016 * 109.26005 * 183.21573 * 11 9 7 13 13 C 1.43013 * 113.73603 * 58.67254 * 12 11 9 14 14 C 1.53096 * 109.26088 * 301.32972 * 13 12 11 15 15 N 1.47013 * 109.25908 * 56.84836 * 14 13 12 16 16 C 1.46896 * 111.00409 * 177.61157 * 15 14 13 17 17 C 1.53000 * 109.46841 * 313.63696 * 16 15 14 18 18 C 1.50702 * 109.47234 * 180.02562 * 17 16 15 19 19 N 1.30256 * 125.62570 * 89.99694 * 18 17 16 20 20 C 1.34474 * 108.70243 * 179.97438 * 19 18 17 21 21 C 1.34329 * 107.66943 * 359.97438 * 20 19 18 22 22 O 1.33975 * 125.61671 * 269.68840 * 18 17 16 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08996 * 109.50597 * 303.15652 * 11 9 7 25 25 H 1.09007 * 109.50453 * 63.28589 * 11 9 7 26 26 H 1.09007 * 109.50776 * 181.39574 * 13 12 11 27 27 H 1.09003 * 109.50601 * 61.26389 * 13 12 11 28 28 H 1.09001 * 109.50586 * 296.91551 * 14 13 12 29 29 H 1.09003 * 109.51104 * 176.78430 * 14 13 12 30 30 H 1.09000 * 109.47247 * 73.62948 * 16 15 14 31 31 H 1.08995 * 109.47567 * 193.63867 * 16 15 14 32 32 H 1.09004 * 109.47075 * 299.99679 * 17 16 15 33 33 H 1.08999 * 109.47393 * 59.99726 * 17 16 15 34 34 H 1.07994 * 126.16711 * 179.97438 * 20 19 18 35 35 H 1.08000 * 126.44233 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6233 -2.5609 -0.8775 11 6 0.3742 -2.5777 1.2640 12 8 -0.2806 -3.8486 1.3025 13 6 0.6194 -4.9599 1.3095 14 6 1.4988 -4.9056 0.0575 15 7 2.2057 -3.6172 0.0170 16 6 3.1057 -3.5466 -1.1419 17 6 3.9112 -4.8436 -1.2417 18 6 4.8349 -4.7710 -2.4302 19 7 6.0543 -4.3131 -2.4166 20 6 6.5642 -4.4074 -3.6573 21 6 5.6184 -4.9420 -4.4473 22 8 4.5393 -5.1722 -3.6738 23 1 -0.4850 0.8401 -0.0041 24 1 0.9962 -2.4617 2.1516 25 1 -0.3726 -1.7842 1.2359 26 1 0.0500 -5.8894 1.3143 27 1 1.2486 -4.9132 2.1984 28 1 0.8745 -5.0062 -0.8304 29 1 2.2247 -5.7182 0.0868 30 1 2.5184 -3.4129 -2.0503 31 1 3.7869 -2.7042 -1.0222 32 1 4.4984 -4.9774 -0.3332 33 1 3.2300 -5.6861 -1.3614 34 1 7.5554 -4.1075 -3.9634 35 1 5.7074 -5.1515 -5.5030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:25 Heat of formation + Delta-G solvation = -11.077476 kcal Electronic energy + Delta-G solvation = -18836.650903 eV Core-core repulsion = 15836.890055 eV Total energy + Delta-G solvation = -2999.760849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.21716 -38.72387 -35.61426 -34.61587 -33.33552 -31.89786 -29.90233 -28.70742 -26.09838 -25.17012 -22.52091 -22.40681 -22.32068 -20.56627 -19.23673 -17.41480 -16.75981 -16.38528 -15.67226 -15.15668 -15.06109 -14.57245 -14.38716 -14.03702 -13.72508 -13.40067 -13.11497 -12.73189 -12.45809 -11.95777 -11.84823 -11.20692 -11.02590 -10.92215 -10.79255 -10.64857 -10.46911 -10.34903 -10.16152 -9.73414 -9.13844 -8.82881 -8.67504 -8.39224 -7.36172 -6.13903 -4.18150 1.52784 2.76963 2.84028 3.26795 3.33710 3.38441 4.12489 4.33610 4.78980 4.90195 4.96469 5.06761 5.19915 5.33306 5.40934 5.66296 5.68162 5.79448 5.85430 5.91245 5.92901 6.22481 6.31147 6.37155 6.44220 6.55035 6.67860 6.87970 7.22148 7.46692 7.66296 7.82256 7.83717 8.10812 8.14403 8.48297 8.88730 9.47666 10.94167 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.007212 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.162232 B = 3881.246068 C = 5212.939527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.189 3.811 10 H 0.010 0.990 11 C 0.069 3.931 12 O -0.404 6.404 13 C 0.067 3.933 14 C 0.009 3.991 15 N -0.530 5.530 16 C 0.076 3.924 17 C -0.032 4.032 18 C 0.210 3.790 19 N -0.485 5.485 20 C -0.044 4.044 21 C -0.088 4.088 22 O -0.204 6.204 23 H 0.265 0.735 24 H 0.035 0.965 25 H 0.124 0.876 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.181 0.819 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 -10.239 -4.979 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.086 0.914 9 C 0.083 3.917 10 H 0.027 0.973 11 C -0.007 4.007 12 O -0.323 6.323 13 C -0.010 4.010 14 C -0.120 4.120 15 N -0.256 5.256 16 C -0.053 4.053 17 C -0.070 4.070 18 C 0.002 3.998 19 N -0.214 5.214 20 C -0.182 4.182 21 C -0.159 4.159 22 O -0.091 6.091 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.141 0.859 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.198 0.802 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.333 -9.861 -4.004 12.925 hybrid contribution 0.141 0.672 -1.688 1.822 sum 7.474 -9.189 -5.692 13.142 Atomic orbital electron populations 1.69844 1.05920 1.27077 1.50349 1.24983 0.94956 0.99435 0.94755 0.86451 0.79869 0.82760 0.78161 1.20695 1.21066 1.19627 1.21073 0.93521 0.89213 1.51035 0.91438 1.19889 0.89320 0.87953 0.94525 0.97251 1.23138 0.97501 0.82808 0.97222 1.87914 1.33850 1.15572 1.94988 1.22437 0.92008 0.90270 0.96320 1.22862 0.96791 0.93909 0.98402 1.62411 1.21074 1.02360 1.39764 1.21890 0.95561 0.95151 0.92707 1.20472 0.95353 1.01147 0.90067 1.26510 0.92670 0.95611 0.84991 1.70506 1.08031 1.19766 1.23135 1.23363 1.01771 1.04045 0.89053 1.24962 0.85890 1.06710 0.98311 1.84469 1.39533 1.64463 1.20591 0.92545 0.94646 0.85889 0.90268 0.93390 0.95056 0.90952 0.95062 0.89195 0.87004 0.89179 0.80172 0.77147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 11.37 55.43 0.63 -24.35 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.69 8.03 -34.44 -0.28 -13.97 16 8 H 0.07 1.82 6.56 -52.49 -0.34 1.47 16 9 C 0.19 4.75 1.93 -68.75 -0.13 4.62 16 10 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 11 C 0.07 1.71 6.02 37.21 0.22 1.94 16 12 O -0.40 -9.10 10.83 -35.23 -0.38 -9.48 16 13 C 0.07 1.21 7.01 37.21 0.26 1.47 16 14 C 0.01 0.16 4.94 -3.71 -0.02 0.14 16 15 N -0.53 -11.10 4.68 -227.73 -1.07 -12.17 16 16 C 0.08 1.45 4.70 -3.83 -0.02 1.44 16 17 C -0.03 -0.48 5.11 -27.88 -0.14 -0.63 16 18 C 0.21 3.31 7.60 -12.95 -0.10 3.21 16 19 N -0.49 -7.92 11.29 -11.10 -0.13 -8.04 16 20 C -0.04 -0.56 11.89 -17.77 -0.21 -0.77 16 21 C -0.09 -1.02 12.18 29.35 0.36 -0.66 16 22 O -0.20 -3.01 10.78 5.36 0.06 -2.95 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.12 3.32 6.19 -51.93 -0.32 3.00 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.03 6.05 -51.93 -0.31 0.72 16 30 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.09 1.90 6.72 -51.93 -0.35 1.55 16 32 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.09 1.19 6.28 -51.93 -0.33 0.86 16 34 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.21 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 287.66 15.07 4.33 4.33 Total: -1.00 -30.65 287.66 -6.31 -36.96 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.59 Total: 1.30 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.15 Total: -1.68 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.56 Total: -44.56 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.32 Total: -12.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.65 -6.31 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.885 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds