Wall clock time and date at job start Mon Mar 30 2020 03:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.50742 * 59.91100 * 9 7 2 11 11 C 1.53096 * 109.50788 * 299.77944 * 9 7 2 12 12 O 1.43016 * 109.26005 * 183.21573 * 11 9 7 13 13 C 1.43013 * 113.73603 * 58.67254 * 12 11 9 14 14 C 1.53096 * 109.26088 * 301.32972 * 13 12 11 15 15 N 1.47013 * 109.25908 * 56.84836 * 14 13 12 16 16 C 1.46896 * 111.00409 * 177.61157 * 15 14 13 17 17 C 1.53000 * 109.46841 * 313.63696 * 16 15 14 18 18 C 1.50702 * 109.47234 * 180.02562 * 17 16 15 19 19 N 1.30256 * 125.62570 * 89.99694 * 18 17 16 20 20 C 1.34474 * 108.70243 * 179.97438 * 19 18 17 21 21 C 1.34329 * 107.66943 * 359.97438 * 20 19 18 22 22 O 1.33975 * 125.61671 * 269.68840 * 18 17 16 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.08996 * 109.50597 * 303.15652 * 11 9 7 25 25 H 1.09007 * 109.50453 * 63.28589 * 11 9 7 26 26 H 1.09007 * 109.50776 * 181.39574 * 13 12 11 27 27 H 1.09003 * 109.50601 * 61.26389 * 13 12 11 28 28 H 1.09001 * 109.50586 * 296.91551 * 14 13 12 29 29 H 1.09003 * 109.51104 * 176.78430 * 14 13 12 30 30 H 1.09000 * 109.47247 * 73.62948 * 16 15 14 31 31 H 1.08995 * 109.47567 * 193.63867 * 16 15 14 32 32 H 1.09004 * 109.47075 * 299.99679 * 17 16 15 33 33 H 1.08999 * 109.47393 * 59.99726 * 17 16 15 34 34 H 1.07994 * 126.16711 * 179.97438 * 20 19 18 35 35 H 1.08000 * 126.44233 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6233 -2.5609 -0.8775 11 6 0.3742 -2.5777 1.2640 12 8 -0.2806 -3.8486 1.3025 13 6 0.6194 -4.9599 1.3095 14 6 1.4988 -4.9056 0.0575 15 7 2.2057 -3.6172 0.0170 16 6 3.1057 -3.5466 -1.1419 17 6 3.9112 -4.8436 -1.2417 18 6 4.8349 -4.7710 -2.4302 19 7 6.0543 -4.3131 -2.4166 20 6 6.5642 -4.4074 -3.6573 21 6 5.6184 -4.9420 -4.4473 22 8 4.5393 -5.1722 -3.6738 23 1 -0.4850 0.8401 -0.0041 24 1 0.9962 -2.4617 2.1516 25 1 -0.3726 -1.7842 1.2359 26 1 0.0500 -5.8894 1.3143 27 1 1.2486 -4.9132 2.1984 28 1 0.8745 -5.0062 -0.8304 29 1 2.2247 -5.7182 0.0868 30 1 2.5184 -3.4129 -2.0503 31 1 3.7869 -2.7042 -1.0222 32 1 4.4984 -4.9774 -0.3332 33 1 3.2300 -5.6861 -1.3614 34 1 7.5554 -4.1075 -3.9634 35 1 5.7074 -5.1515 -5.5030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:25 Heat of formation + Delta-G solvation = -35.768509 kcal Electronic energy + Delta-G solvation = -18837.721587 eV Core-core repulsion = 15836.890055 eV Total energy + Delta-G solvation = -3000.831532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.27398 -40.41965 -37.22170 -35.74363 -35.26568 -33.29060 -31.67393 -29.96702 -27.72954 -27.04313 -24.12642 -23.79206 -23.49775 -21.87462 -20.94346 -18.73357 -18.41752 -17.62344 -17.29493 -16.79780 -16.39397 -16.27189 -15.78426 -15.60209 -15.44922 -15.02936 -14.25062 -14.20941 -13.99859 -13.58790 -13.32076 -12.90043 -12.69258 -12.51064 -12.45386 -12.24154 -12.05680 -11.99167 -11.58074 -11.42479 -11.02534 -10.71448 -10.28059 -9.79867 -9.10880 -8.21364 -6.33013 0.49304 1.39414 1.41019 1.52186 1.71117 1.83153 2.37212 2.96108 3.04575 3.27810 3.39958 3.91961 3.98937 4.15655 4.18575 4.27601 4.40386 4.41235 4.50815 4.62174 4.72674 4.82844 4.86051 4.94013 4.96907 5.04735 5.09038 5.29011 5.34878 5.50982 5.62827 5.94982 6.17277 6.43600 6.61602 6.77719 6.80547 7.36633 8.86206 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.007212 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.162232 B = 3881.246068 C = 5212.939527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.196 3.804 10 H -0.033 1.033 11 C 0.084 3.916 12 O -0.420 6.420 13 C 0.058 3.942 14 C 0.007 3.993 15 N -0.535 5.535 16 C 0.084 3.916 17 C -0.016 4.016 18 C 0.184 3.816 19 N -0.513 5.513 20 C -0.066 4.066 21 C -0.070 4.070 22 O -0.216 6.216 23 H 0.266 0.734 24 H 0.031 0.969 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.117 0.883 30 H 0.010 0.990 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.210 0.790 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -11.615 -5.580 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.787 3.213 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.089 3.911 10 H -0.016 1.016 11 C 0.007 3.993 12 O -0.340 6.340 13 C -0.019 4.019 14 C -0.120 4.120 15 N -0.260 5.260 16 C -0.045 4.045 17 C -0.054 4.054 18 C -0.023 4.023 19 N -0.243 5.243 20 C -0.204 4.204 21 C -0.140 4.140 22 O -0.103 6.103 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.112 0.888 26 H 0.138 0.862 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.135 0.865 30 H 0.028 0.972 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.227 0.773 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 8.727 -11.266 -4.608 14.977 hybrid contribution -0.246 1.015 -1.588 1.901 sum 8.481 -10.250 -6.196 14.676 Atomic orbital electron populations 1.69972 1.07184 1.27861 1.50860 1.25753 0.95722 1.02601 0.94343 0.85495 0.78738 0.78907 0.78193 1.20364 1.20336 1.19208 1.21306 0.93369 0.90506 1.51133 0.92049 1.19617 0.89456 0.89210 0.92834 1.01564 1.22701 0.96335 0.83590 0.96650 1.87866 1.35254 1.15768 1.95081 1.22845 0.92326 0.89978 0.96719 1.23039 0.97658 0.93283 0.98066 1.62329 1.20459 1.02722 1.40493 1.21714 0.94815 0.96872 0.91051 1.20261 0.95268 0.99153 0.90730 1.26435 0.92905 0.97333 0.85605 1.70462 1.08612 1.19962 1.25287 1.23936 1.03474 1.04853 0.88146 1.25930 0.84273 1.04085 0.99693 1.84468 1.40753 1.64501 1.20544 0.92431 0.95060 0.88840 0.86194 0.92419 0.95747 0.86521 0.97162 0.91928 0.86124 0.86876 0.77330 0.72506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.99 11.37 21.45 0.24 -52.75 16 2 C 0.02 0.85 5.31 84.66 0.45 1.29 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.52 -29.09 8.03 25.60 0.21 -28.88 16 8 H 0.06 3.40 6.56 -2.91 -0.02 3.38 16 9 C 0.20 10.19 1.93 44.18 0.09 10.28 16 10 H -0.03 -1.96 8.14 -2.38 -0.02 -1.98 16 11 C 0.08 4.26 6.02 72.01 0.43 4.70 16 12 O -0.42 -18.89 10.83 -148.98 -1.61 -20.50 16 13 C 0.06 1.95 7.01 72.01 0.50 2.45 16 14 C 0.01 0.25 4.94 86.31 0.43 0.68 16 15 N -0.53 -22.46 4.68 -874.40 -4.09 -26.55 16 16 C 0.08 3.29 4.70 86.30 0.41 3.69 16 17 C -0.02 -0.47 5.11 29.85 0.15 -0.32 16 18 C 0.18 5.62 7.60 88.34 0.67 6.29 16 19 N -0.51 -16.21 11.29 -303.82 -3.43 -19.64 16 20 C -0.07 -1.56 11.89 83.39 0.99 -0.57 16 21 C -0.07 -1.42 12.18 66.93 0.81 -0.61 16 22 O -0.22 -5.99 10.78 -3.74 -0.04 -6.03 16 23 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 5.27 6.19 -2.38 -0.01 5.26 16 26 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 2.89 6.05 -2.39 -0.01 2.88 16 30 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 31 H 0.06 2.74 6.72 -2.39 -0.02 2.73 16 32 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.11 2.69 6.28 -2.39 -0.01 2.68 16 34 H 0.21 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.26 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -69.18 287.66 -0.68 -69.86 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.09 Total: 10.70 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.14 Total: -0.99 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -7.28 Total: -98.94 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.65 Total: -26.53 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.18 -0.68 -69.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.090 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds