Wall clock time and date at job start Mon Mar 30 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 126.66763 * 2 1 4 4 C 1.42270 * 103.92139 * 180.12806 * 3 2 1 5 5 C 1.48335 * 126.93900 * 179.91264 * 4 3 2 6 6 O 1.21497 * 119.99749 * 359.70633 * 5 4 3 7 7 N 1.34776 * 120.00345 * 179.70939 * 5 4 3 8 8 C 1.46494 * 120.00296 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.47017 * 325.00341 * 8 7 5 10 10 C 1.50694 * 109.47294 * 205.00222 * 8 7 5 11 11 H 1.08004 * 120.00227 * 267.72133 * 10 8 7 12 12 C 1.37878 * 120.00188 * 88.00027 * 10 8 7 13 13 N 1.31513 * 120.00365 * 183.33611 * 12 10 8 14 14 Si 1.86803 * 119.99681 * 3.33189 * 12 10 8 15 15 H 1.48500 * 109.47201 * 89.88208 * 14 12 10 16 16 H 1.48507 * 109.47027 * 209.87813 * 14 12 10 17 17 H 1.48494 * 109.47467 * 329.87742 * 14 12 10 18 18 C 1.53000 * 109.47194 * 84.99951 * 8 7 5 19 19 C 1.53001 * 109.47431 * 175.51532 * 18 8 7 20 20 C 1.53002 * 109.46993 * 295.51808 * 18 8 7 21 21 N 1.30981 * 106.12584 * 359.65075 * 4 3 2 22 22 O 1.20902 * 111.43751 * 0.22563 * 21 4 3 23 23 H 1.09006 * 109.47256 * 180.28122 * 1 2 3 24 24 H 1.08989 * 109.47099 * 300.28393 * 1 2 3 25 25 H 1.09005 * 109.46742 * 60.28512 * 1 2 3 26 26 H 1.07994 * 128.03903 * 0.02562 * 3 2 1 27 27 H 0.96998 * 119.99741 * 0.02562 * 7 5 4 28 28 H 0.96999 * 120.00077 * 180.02562 * 13 12 10 29 29 H 1.09004 * 109.46802 * 55.51369 * 18 8 7 30 30 H 1.09000 * 109.46952 * 53.21719 * 19 18 8 31 31 H 1.09000 * 109.47307 * 173.22128 * 19 18 8 32 32 H 1.08995 * 109.46835 * 293.22091 * 19 18 8 33 33 H 1.08994 * 109.47457 * 59.99856 * 20 18 8 34 34 H 1.09008 * 109.46810 * 179.97438 * 20 18 8 35 35 H 1.08996 * 109.47177 * 299.99164 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6271 0.5353 -0.0031 5 6 4.9076 1.2840 -0.0062 6 8 4.9009 2.4990 -0.0117 7 7 6.0785 0.6166 -0.0030 8 6 7.3432 1.3561 -0.0066 9 1 7.2318 2.2634 -0.6004 10 6 8.4267 0.4952 -0.6030 11 1 9.0391 -0.1228 0.0370 12 6 8.6403 0.5008 -1.9652 13 7 9.5412 -0.2989 -2.4929 14 14 7.6498 1.6442 -3.0611 15 1 8.3597 2.9419 -3.1925 16 1 7.4910 1.0288 -4.4033 17 1 6.3115 1.8708 -2.4590 18 6 7.7200 1.7290 1.4286 19 6 9.0939 2.4024 1.4366 20 6 6.6762 2.6931 1.9958 21 7 3.4761 -0.7658 0.0031 22 8 2.3073 -1.0750 0.0049 23 1 -0.3634 -1.0277 0.0050 24 1 -0.3633 0.5182 0.8873 25 1 -0.3633 0.5094 -0.8926 26 1 2.0302 2.1271 0.0004 27 1 6.0839 -0.3533 0.0009 28 1 9.6917 -0.2946 -3.4511 29 1 7.7534 0.8280 2.0412 30 1 9.0954 3.2331 0.7310 31 1 9.3098 2.7755 2.4377 32 1 9.8551 1.6781 1.1468 33 1 5.6975 2.2135 1.9901 34 1 6.9445 2.9584 3.0185 35 1 6.6429 3.5941 1.3833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:58 Heat of formation + Delta-G solvation = 8.504837 kcal Electronic energy + Delta-G solvation = -18926.498360 eV Core-core repulsion = 15927.586665 eV Total energy + Delta-G solvation = -2998.911696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.90344 -39.10399 -35.84673 -33.96017 -33.39993 -32.54214 -32.11091 -27.91906 -27.69081 -26.20923 -24.33648 -22.65808 -22.12651 -19.48147 -19.11638 -17.68550 -17.55034 -17.01786 -16.09532 -15.36344 -14.81088 -14.30704 -14.04035 -13.71761 -13.46661 -13.40768 -13.04040 -12.68268 -12.49231 -12.11794 -11.90786 -11.44657 -11.33693 -11.13671 -11.02230 -10.40267 -10.30449 -10.19664 -9.86253 -9.79371 -9.49284 -9.35575 -9.20151 -8.76074 -7.97528 -6.31359 -4.38508 1.36348 1.87050 3.04647 3.21990 3.31462 3.43843 3.71661 3.80604 4.29257 4.30357 4.69186 5.00236 5.18045 5.18409 5.23067 5.43969 5.60426 5.74378 5.81401 5.89761 6.00120 6.06672 6.38731 6.57362 6.64535 6.67603 6.85423 6.95419 7.17881 7.22165 7.38336 7.57908 8.07709 8.21485 8.59490 8.76059 8.94551 9.31518 10.78508 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.022410 B = 0.007282 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.127738 B = 3844.207057 C = 4452.426511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.017 4.017 5 C 0.575 3.425 6 O -0.541 6.541 7 N -0.687 5.687 8 C 0.232 3.768 9 H 0.055 0.945 10 C -0.521 4.521 11 H 0.082 0.918 12 C 0.088 3.912 13 N -0.878 5.878 14 Si 0.869 3.131 15 H -0.273 1.273 16 H -0.287 1.287 17 H -0.256 1.256 18 C -0.092 4.092 19 C -0.127 4.127 20 C -0.138 4.138 21 N -0.333 5.333 22 O 0.114 5.886 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.177 0.823 27 H 0.396 0.604 28 H 0.269 0.731 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.033 0.967 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 1.274 5.254 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.111 4.111 3 C -0.211 4.211 4 C -0.177 4.177 5 C 0.357 3.643 6 O -0.419 6.419 7 N -0.336 5.336 8 C 0.133 3.867 9 H 0.073 0.927 10 C -0.559 4.559 11 H 0.100 0.900 12 C -0.119 4.119 13 N -0.513 5.513 14 Si 0.696 3.304 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.180 1.180 18 C -0.112 4.112 19 C -0.184 4.184 20 C -0.196 4.196 21 N -0.035 5.035 22 O 0.040 5.960 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.194 0.806 27 H 0.231 0.769 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.153 1.084 5.080 15.076 hybrid contribution -0.826 0.778 -0.793 1.384 sum -14.979 1.863 4.288 15.691 Atomic orbital electron populations 1.20306 0.83786 1.04574 1.04067 1.24445 0.96400 0.85885 1.04342 1.22435 0.90194 1.01303 1.07120 1.24132 0.97806 0.89930 1.05798 1.17228 0.81968 0.86776 0.78330 1.90718 1.86799 1.12536 1.51876 1.47749 1.05631 1.10904 1.69353 1.19349 0.80776 0.93465 0.93159 0.92738 1.21079 1.15050 1.27018 0.92782 0.89954 1.25108 0.94216 0.94482 0.98109 1.69902 1.32602 1.36122 1.12670 0.86923 0.82292 0.81338 0.79887 1.19814 1.21360 1.17956 1.21342 0.94807 0.97457 0.97544 1.21629 0.97181 1.00623 0.99009 1.21934 0.98931 1.00016 0.98682 1.74190 0.96646 1.16036 1.16635 1.84779 1.11336 1.33430 1.66433 0.89874 0.89216 0.89233 0.80593 0.76854 0.92146 0.92382 0.93453 0.94711 0.91435 0.93392 0.94806 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.45 36.01 0.38 -0.07 16 2 C -0.05 -0.57 7.47 -35.35 -0.26 -0.83 16 3 C -0.19 -2.75 10.92 -39.08 -0.43 -3.17 16 4 C -0.02 -0.31 7.19 -82.53 -0.59 -0.90 16 5 C 0.57 12.41 6.33 -12.11 -0.08 12.34 16 6 O -0.54 -12.63 14.08 5.37 0.08 -12.55 16 7 N -0.69 -15.31 5.00 -55.73 -0.28 -15.58 16 8 C 0.23 5.48 1.22 -69.09 -0.08 5.40 16 9 H 0.05 1.40 5.14 -51.93 -0.27 1.13 16 10 C -0.52 -13.77 7.79 -34.44 -0.27 -14.03 16 11 H 0.08 2.32 7.88 -52.48 -0.41 1.91 16 12 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 13 N -0.88 -25.52 13.96 55.43 0.77 -24.74 16 14 Si 0.87 21.79 27.07 -169.99 -4.60 17.19 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.26 -6.57 6.72 56.52 0.38 -6.19 16 18 C -0.09 -1.91 2.70 -90.62 -0.24 -2.16 16 19 C -0.13 -2.47 8.73 37.16 0.32 -2.15 16 20 C -0.14 -2.70 7.78 37.16 0.29 -2.41 16 21 N -0.33 -5.88 11.84 33.29 0.39 -5.49 16 22 O 0.11 1.66 11.18 17.24 0.19 1.85 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.09 0.44 8.14 -51.94 -0.42 0.02 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.18 2.25 8.06 -52.49 -0.42 1.82 16 27 H 0.40 8.59 8.35 -40.82 -0.34 8.25 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.39 7.24 -51.93 -0.38 1.02 16 33 H 0.05 0.97 5.66 -51.93 -0.29 0.67 16 34 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.05 1.11 7.81 -51.93 -0.41 0.70 16 LS Contribution 295.55 15.07 4.45 4.45 Total: -1.00 -30.95 295.55 -4.69 -35.65 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.63 Total: 4.89 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.07 Total: -5.67 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.89 Total: -45.81 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.27 Total: -10.70 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.60 Total: 17.19 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.95 -4.69 -35.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.151 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds