Wall clock time and date at job start Mon Mar 30 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 126.66763 * 2 1 4 4 C 1.42270 * 103.92139 * 180.12806 * 3 2 1 5 5 C 1.48335 * 126.93900 * 179.91264 * 4 3 2 6 6 O 1.21497 * 119.99749 * 359.70633 * 5 4 3 7 7 N 1.34776 * 120.00345 * 179.70939 * 5 4 3 8 8 C 1.46494 * 120.00296 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.47017 * 325.00341 * 8 7 5 10 10 C 1.50694 * 109.47294 * 205.00222 * 8 7 5 11 11 H 1.08004 * 120.00227 * 267.72133 * 10 8 7 12 12 C 1.37878 * 120.00188 * 88.00027 * 10 8 7 13 13 N 1.31513 * 120.00365 * 183.33611 * 12 10 8 14 14 Si 1.86803 * 119.99681 * 3.33189 * 12 10 8 15 15 H 1.48500 * 109.47201 * 89.88208 * 14 12 10 16 16 H 1.48507 * 109.47027 * 209.87813 * 14 12 10 17 17 H 1.48494 * 109.47467 * 329.87742 * 14 12 10 18 18 C 1.53000 * 109.47194 * 84.99951 * 8 7 5 19 19 C 1.53001 * 109.47431 * 175.51532 * 18 8 7 20 20 C 1.53002 * 109.46993 * 295.51808 * 18 8 7 21 21 N 1.30981 * 106.12584 * 359.65075 * 4 3 2 22 22 O 1.20902 * 111.43751 * 0.22563 * 21 4 3 23 23 H 1.09006 * 109.47256 * 180.28122 * 1 2 3 24 24 H 1.08989 * 109.47099 * 300.28393 * 1 2 3 25 25 H 1.09005 * 109.46742 * 60.28512 * 1 2 3 26 26 H 1.07994 * 128.03903 * 0.02562 * 3 2 1 27 27 H 0.96998 * 119.99741 * 0.02562 * 7 5 4 28 28 H 0.96999 * 120.00077 * 180.02562 * 13 12 10 29 29 H 1.09004 * 109.46802 * 55.51369 * 18 8 7 30 30 H 1.09000 * 109.46952 * 53.21719 * 19 18 8 31 31 H 1.09000 * 109.47307 * 173.22128 * 19 18 8 32 32 H 1.08995 * 109.46835 * 293.22091 * 19 18 8 33 33 H 1.08994 * 109.47457 * 59.99856 * 20 18 8 34 34 H 1.09008 * 109.46810 * 179.97438 * 20 18 8 35 35 H 1.08996 * 109.47177 * 299.99164 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6271 0.5353 -0.0031 5 6 4.9076 1.2840 -0.0062 6 8 4.9009 2.4990 -0.0117 7 7 6.0785 0.6166 -0.0030 8 6 7.3432 1.3561 -0.0066 9 1 7.2318 2.2634 -0.6004 10 6 8.4267 0.4952 -0.6030 11 1 9.0391 -0.1228 0.0370 12 6 8.6403 0.5008 -1.9652 13 7 9.5412 -0.2989 -2.4929 14 14 7.6498 1.6442 -3.0611 15 1 8.3597 2.9419 -3.1925 16 1 7.4910 1.0288 -4.4033 17 1 6.3115 1.8708 -2.4590 18 6 7.7200 1.7290 1.4286 19 6 9.0939 2.4024 1.4366 20 6 6.6762 2.6931 1.9958 21 7 3.4761 -0.7658 0.0031 22 8 2.3073 -1.0750 0.0049 23 1 -0.3634 -1.0277 0.0050 24 1 -0.3633 0.5182 0.8873 25 1 -0.3633 0.5094 -0.8926 26 1 2.0302 2.1271 0.0004 27 1 6.0839 -0.3533 0.0009 28 1 9.6917 -0.2946 -3.4511 29 1 7.7534 0.8280 2.0412 30 1 9.0954 3.2331 0.7310 31 1 9.3098 2.7755 2.4377 32 1 9.8551 1.6781 1.1468 33 1 5.6975 2.2135 1.9901 34 1 6.9445 2.9584 3.0185 35 1 6.6429 3.5941 1.3833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260002417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:58 Heat of formation + Delta-G solvation = -12.911501 kcal Electronic energy + Delta-G solvation = -18927.427043 eV Core-core repulsion = 15927.586665 eV Total energy + Delta-G solvation = -2999.840378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.14165 -40.84221 -37.61418 -35.16438 -34.64584 -34.55162 -33.71298 -29.66586 -28.67790 -27.80261 -25.93192 -24.25502 -23.55788 -21.06115 -20.85955 -19.28632 -18.92008 -18.45740 -17.69950 -17.12171 -16.60406 -16.17619 -15.39251 -15.00561 -14.86306 -14.57498 -14.36857 -13.96530 -13.86479 -13.75698 -13.30375 -13.09940 -13.04892 -12.81881 -12.39847 -12.17782 -12.06451 -11.89323 -11.63164 -11.43705 -11.24531 -11.13379 -10.88672 -10.38481 -9.77169 -8.46969 -6.55346 0.11886 0.70510 1.19961 1.25655 1.39441 1.99523 2.16272 2.20094 2.23760 2.89479 3.16554 3.66308 3.96279 4.09858 4.17371 4.26338 4.34500 4.43292 4.79198 4.80149 4.84936 4.87025 4.87104 4.92215 5.04281 5.18955 5.26064 5.28111 5.33191 5.50560 5.62868 5.77324 6.05630 6.56721 6.71621 7.06941 7.16469 7.22047 8.66820 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.022410 B = 0.007282 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.127738 B = 3844.207057 C = 4452.426511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.017 4.017 3 C -0.203 4.203 4 C -0.051 4.051 5 C 0.576 3.424 6 O -0.563 6.563 7 N -0.694 5.694 8 C 0.238 3.762 9 H 0.036 0.964 10 C -0.513 4.513 11 H 0.057 0.943 12 C 0.047 3.953 13 N -0.918 5.918 14 Si 0.921 3.079 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.127 4.127 21 N -0.356 5.356 22 O 0.125 5.875 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.192 0.808 27 H 0.398 0.602 28 H 0.271 0.729 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.946 1.813 5.979 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.226 4.226 4 C -0.209 4.209 5 C 0.360 3.640 6 O -0.442 6.442 7 N -0.343 5.343 8 C 0.137 3.863 9 H 0.054 0.946 10 C -0.552 4.552 11 H 0.075 0.925 12 C -0.156 4.156 13 N -0.556 5.556 14 Si 0.747 3.253 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.112 4.112 19 C -0.180 4.180 20 C -0.184 4.184 21 N -0.056 5.056 22 O 0.048 5.952 23 H 0.120 0.880 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.209 0.791 27 H 0.233 0.767 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.867 1.629 5.811 17.914 hybrid contribution -0.121 0.554 -0.938 1.096 sum -16.988 2.184 4.873 17.807 Atomic orbital electron populations 1.20670 0.79290 1.06567 1.06093 1.25357 0.98252 0.83906 1.00555 1.22666 0.88756 1.02853 1.08342 1.23836 0.97648 0.90675 1.08761 1.17451 0.82660 0.86685 0.77203 1.90687 1.87386 1.13470 1.52647 1.47368 1.05817 1.10855 1.70229 1.19172 0.80504 0.92000 0.94622 0.94617 1.21147 1.15310 1.26316 0.92378 0.92476 1.25649 0.95049 0.95608 0.99315 1.69983 1.34471 1.38006 1.13094 0.86114 0.80490 0.80147 0.78552 1.19128 1.20913 1.19159 1.21339 0.96037 0.98135 0.95698 1.21572 0.95751 0.99798 1.00841 1.21795 0.97772 0.98792 1.00034 1.74190 0.98294 1.15781 1.17380 1.84743 1.10745 1.34312 1.65358 0.87951 0.86856 0.87171 0.79118 0.76684 0.91937 0.92248 0.93968 0.91397 0.93276 0.94471 0.91842 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.45 71.24 0.74 0.19 16 2 C -0.02 -0.36 7.47 25.01 0.19 -0.17 16 3 C -0.20 -5.53 10.92 22.60 0.25 -5.28 16 4 C -0.05 -1.88 7.19 42.96 0.31 -1.57 16 5 C 0.58 24.97 6.33 86.93 0.55 25.52 16 6 O -0.56 -26.28 14.08 -3.71 -0.05 -26.33 16 7 N -0.69 -31.37 5.00 -448.52 -2.24 -33.61 16 8 C 0.24 11.38 1.22 44.24 0.05 11.44 16 9 H 0.04 1.86 5.14 -2.39 -0.01 1.85 16 10 C -0.51 -27.82 7.79 25.60 0.20 -27.62 16 11 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 12 C 0.05 2.62 5.47 84.66 0.46 3.08 16 13 N -0.92 -54.62 13.96 21.45 0.30 -54.32 16 14 Si 0.92 45.87 27.07 68.60 1.86 47.73 16 15 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 17 H -0.27 -13.69 6.72 99.48 0.67 -13.02 16 18 C -0.09 -3.82 2.70 -10.79 -0.03 -3.84 16 19 C -0.12 -4.67 8.73 71.98 0.63 -4.04 16 20 C -0.13 -4.78 7.78 71.98 0.56 -4.22 16 21 N -0.36 -12.32 11.84 -49.53 -0.59 -12.91 16 22 O 0.13 3.39 11.18 71.86 0.80 4.19 16 23 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 24 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.19 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.40 17.70 8.35 -92.71 -0.77 16.93 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 2.04 7.24 -2.39 -0.02 2.02 16 33 H 0.04 1.46 5.66 -2.39 -0.01 1.45 16 34 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.04 1.73 7.81 -2.39 -0.02 1.71 16 Total: -1.00 -68.51 295.55 4.29 -64.23 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.29 Total: 17.54 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 3.91 Total: -6.52 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -2.53 Total: -100.84 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.75 Total: -22.14 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.86 Total: 47.73 kcal Total: -68.51 4.29 -64.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.316 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds