Wall clock time and date at job start Mon Mar 30 2020 03:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99743 * 2 1 4 4 H 1.48497 * 109.47068 * 270.00213 * 3 2 1 5 5 H 1.48500 * 109.47283 * 30.00061 * 3 2 1 6 6 H 1.48501 * 109.47125 * 150.00166 * 3 2 1 7 7 C 1.37872 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00177 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99973 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.07482 * 60.00310 * 9 7 2 11 11 C 1.54399 * 109.03237 * 300.97417 * 9 7 2 12 12 C 1.50724 * 109.13886 * 164.10937 * 11 9 7 13 13 O 1.44222 * 112.85472 * 91.52091 * 12 11 9 14 14 C 1.43939 * 116.11557 * 318.69098 * 13 12 11 15 15 C 1.50736 * 111.87592 * 319.24445 * 14 13 12 16 16 N 1.40462 * 109.08784 * 179.06431 * 9 7 2 17 17 C 1.46899 * 110.99571 * 308.26879 * 16 9 7 18 18 C 1.50709 * 109.47074 * 189.99751 * 17 16 9 19 19 C 1.34325 * 126.44019 * 89.99642 * 18 17 16 20 20 N 1.34479 * 107.66840 * 180.02562 * 19 18 17 21 21 C 1.30251 * 108.69949 * 0.02562 * 20 19 18 22 22 O 1.33972 * 108.76208 * 359.72573 * 21 20 19 23 23 H 0.97002 * 120.00134 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.52041 * 284.00300 * 11 9 7 25 25 H 1.08995 * 109.52653 * 44.20817 * 11 9 7 26 26 H 1.09000 * 108.80688 * 330.64858 * 12 11 9 27 27 H 1.09005 * 108.80537 * 212.39156 * 12 11 9 28 28 H 1.08999 * 108.99598 * 198.62636 * 14 13 12 29 29 H 1.09001 * 109.00067 * 79.86004 * 14 13 12 30 30 H 1.09006 * 109.63834 * 333.68664 * 15 14 13 31 31 H 1.09006 * 109.80915 * 213.17169 * 15 14 13 32 32 H 1.08994 * 109.47639 * 309.99619 * 17 16 9 33 33 H 1.09006 * 109.47388 * 69.99979 * 17 16 9 34 34 H 1.07999 * 126.16729 * 0.02562 * 19 18 17 35 35 H 1.08004 * 125.62375 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8681 -0.6784 0.8916 11 6 4.0145 -0.4437 -1.2522 12 6 5.4704 -0.0987 -1.0700 13 8 6.3555 -1.1121 -1.5892 14 6 5.9754 -2.4767 -1.3336 15 6 5.4398 -2.6582 0.0636 16 7 3.9709 -2.5212 0.0223 17 6 3.3407 -3.2780 1.1124 18 6 4.0288 -4.6104 1.2621 19 6 5.0864 -4.8786 2.0457 20 7 5.3905 -6.1793 1.8897 21 6 4.5546 -6.7046 1.0400 22 8 3.6960 -5.7577 0.6387 23 1 -0.4850 0.8401 -0.0004 24 1 3.8980 -1.0800 -2.1295 25 1 3.4372 0.4712 -1.3851 26 1 5.6703 0.0310 -0.0063 27 1 5.6752 0.8421 -1.5810 28 1 6.8465 -3.1184 -1.4660 29 1 5.2075 -2.7712 -2.0490 30 1 5.8607 -1.8958 0.7192 31 1 5.7052 -3.6480 0.4353 32 1 3.4290 -2.7169 2.0426 33 1 2.2871 -3.4370 0.8826 34 1 5.5999 -4.1763 2.6855 35 1 4.5509 -7.7350 0.7163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260002962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:32 Heat of formation + Delta-G solvation = -11.318323 kcal Electronic energy + Delta-G solvation = -19562.614070 eV Core-core repulsion = 16562.842777 eV Total energy + Delta-G solvation = -2999.771292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.34728 -40.86590 -37.63670 -35.71366 -35.22453 -33.52653 -31.96228 -30.19424 -28.68721 -26.36422 -25.01204 -23.63425 -22.60166 -21.90681 -21.24253 -19.17311 -18.44922 -18.18747 -17.39858 -17.26749 -16.58124 -16.28151 -15.97304 -15.41306 -15.33257 -14.74823 -14.62526 -14.51837 -13.92401 -13.60592 -13.48066 -13.10301 -13.00020 -12.53028 -12.42541 -12.17013 -12.04327 -11.86658 -11.50142 -11.42147 -11.10897 -10.74321 -10.48536 -9.76645 -9.06481 -8.31253 -6.36533 0.48555 1.27929 1.34320 1.43394 1.71138 1.86412 2.28525 2.83013 2.97420 3.09524 3.43398 3.80401 3.96624 3.97951 4.10372 4.12073 4.21720 4.32905 4.35839 4.43734 4.59673 4.72886 4.78443 4.83260 4.84878 4.94655 5.06734 5.13924 5.31646 5.42209 5.52832 5.94977 6.18720 6.20092 6.69549 6.71786 6.75472 7.30236 8.83766 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.008282 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.281549 B = 3380.125296 C = 4248.029083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.019 3.981 3 Si 0.936 3.064 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.244 1.244 7 C -0.517 4.517 8 H 0.050 0.950 9 C 0.208 3.792 10 H -0.011 1.011 11 C -0.153 4.153 12 C 0.061 3.939 13 O -0.404 6.404 14 C 0.067 3.933 15 C 0.016 3.984 16 N -0.543 5.543 17 C 0.157 3.843 18 C -0.038 4.038 19 C -0.042 4.042 20 N -0.514 5.514 21 C 0.179 3.821 22 O -0.211 6.211 23 H 0.267 0.733 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.195 0.805 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 -7.393 1.269 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.167 1.167 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.099 3.901 10 H 0.006 0.994 11 C -0.191 4.191 12 C -0.015 4.015 13 O -0.324 6.324 14 C -0.009 4.009 15 C -0.111 4.111 16 N -0.268 5.268 17 C 0.030 3.970 18 C -0.091 4.091 19 C -0.180 4.180 20 N -0.243 5.243 21 C -0.047 4.047 22 O -0.097 6.097 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.212 0.788 35 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 12.399 -7.755 1.028 14.660 hybrid contribution -1.021 1.489 0.479 1.868 sum 11.377 -6.266 1.507 13.076 Atomic orbital electron populations 1.70018 1.08046 1.28069 1.51967 1.25754 0.95382 1.02627 0.94178 0.86052 0.79628 0.79230 0.78781 1.18915 1.22626 1.16707 1.21319 0.90214 0.93559 1.50375 0.93220 1.18528 0.93927 0.85354 0.92306 0.99390 1.22347 0.95490 1.00531 1.00697 1.22440 0.88993 0.91290 0.98780 1.88172 1.49520 1.15303 1.79377 1.22430 1.00514 0.82539 0.95459 1.22719 0.87039 1.03209 0.98115 1.59093 1.06835 1.15030 1.45878 1.20232 0.98198 0.84682 0.93879 1.23418 0.99675 0.87875 0.98158 1.23259 0.97779 0.93630 1.03372 1.70471 1.27400 1.08162 1.18258 1.29180 0.84777 0.97279 0.93474 1.84500 1.50361 1.18490 1.56377 0.92435 0.91056 0.92090 0.93473 0.88457 0.87125 0.93159 0.93590 0.88031 0.91340 0.90536 0.78806 0.69039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 13.96 21.45 0.30 -56.35 16 2 C 0.02 1.05 5.44 84.65 0.46 1.51 16 3 Si 0.94 42.36 24.38 68.60 1.67 44.03 16 4 H -0.26 -11.32 6.75 99.48 0.67 -10.65 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.24 -10.07 6.51 99.48 0.65 -9.42 16 7 C -0.52 -27.77 8.44 25.60 0.22 -27.55 16 8 H 0.05 2.97 6.31 -2.91 -0.02 2.95 16 9 C 0.21 9.18 1.05 45.81 0.05 9.23 16 10 H -0.01 -0.50 6.67 -2.39 -0.02 -0.51 16 11 C -0.15 -6.26 4.26 30.33 0.13 -6.13 16 12 C 0.06 2.11 6.26 71.24 0.45 2.55 16 13 O -0.40 -13.60 10.92 -148.98 -1.63 -15.23 16 14 C 0.07 2.06 6.35 71.25 0.45 2.52 16 15 C 0.02 0.50 5.02 85.44 0.43 0.93 16 16 N -0.54 -21.05 4.02 -894.83 -3.60 -24.65 16 17 C 0.16 5.79 5.15 85.56 0.44 6.23 16 18 C -0.04 -1.16 5.52 24.79 0.14 -1.03 16 19 C -0.04 -1.14 9.81 83.39 0.82 -0.32 16 20 N -0.51 -13.39 11.29 -316.06 -3.57 -16.96 16 21 C 0.18 3.84 13.23 130.48 1.73 5.57 16 22 O -0.21 -6.18 10.78 -3.73 -0.04 -6.22 16 23 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.07 3.02 7.25 -2.39 -0.02 3.00 16 25 H 0.06 2.62 3.24 -2.39 -0.01 2.61 16 26 H 0.05 1.60 6.61 -2.39 -0.02 1.59 16 27 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.05 1.71 7.26 -2.39 -0.02 1.69 16 30 H 0.05 1.45 6.85 -2.38 -0.02 1.44 16 31 H 0.10 2.92 4.33 -2.38 -0.01 2.91 16 32 H 0.07 2.46 8.06 -2.39 -0.02 2.44 16 33 H 0.08 3.29 6.29 -2.38 -0.01 3.27 16 34 H 0.20 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.29 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -65.81 269.85 -0.55 -66.35 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.02 Total: 15.52 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 5.30 Total: -6.49 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -6.87 Total: -97.97 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.67 Total: -21.45 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.03 kcal Total: -65.81 -0.55 -66.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.036 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds