Wall clock time and date at job start Mon Mar 30 2020 03:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.52176 * 2 1 4 4 N 1.31128 * 126.55302 * 299.99604 * 3 2 1 5 5 C 1.34493 * 105.61712 * 179.97438 * 4 3 2 6 6 C 1.50707 * 126.28963 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47007 * 89.99466 * 6 5 4 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 N 1.29941 * 107.42567 * 0.24166 * 5 4 3 16 16 O 1.21302 * 110.25003 * 359.58052 * 15 5 4 17 17 C 1.53179 * 109.52195 * 120.12401 * 2 1 3 18 18 C 1.53177 * 109.03525 * 176.94834 * 17 2 1 19 19 C 1.53092 * 109.16565 * 303.01820 * 18 17 2 20 20 O 1.42910 * 109.41165 * 57.61099 * 19 18 17 21 21 C 1.43034 * 114.13048 * 298.83674 * 20 19 18 22 22 H 1.08999 * 109.47486 * 60.00185 * 1 2 3 23 23 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47337 * 300.00192 * 1 2 3 25 25 H 1.09005 * 109.46877 * 329.99743 * 6 5 4 26 26 H 1.09002 * 109.46993 * 210.00089 * 6 5 4 27 27 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.54374 * 296.81785 * 17 2 1 29 29 H 1.09002 * 109.54186 * 57.08155 * 17 2 1 30 30 H 1.08998 * 109.52071 * 62.92888 * 18 17 2 31 31 H 1.08999 * 109.51976 * 183.11458 * 18 17 2 32 32 H 1.08996 * 109.48240 * 177.59265 * 19 18 17 33 33 H 1.08997 * 109.48084 * 297.62024 * 19 18 17 34 34 H 1.09001 * 109.46912 * 301.19057 * 21 20 19 35 35 H 1.09002 * 109.56815 * 181.11123 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4203 0.0000 4 7 1.7982 2.3324 -0.9123 5 6 2.4439 3.4362 -0.4958 6 6 2.4832 4.7667 -1.2025 7 6 1.3359 5.6212 -0.7287 8 1 0.6474 5.2392 0.0106 9 6 1.1652 6.8907 -1.2390 10 7 0.1642 7.6366 -0.8251 11 14 2.3556 7.5510 -2.5181 12 1 3.4788 8.2444 -1.8378 13 1 2.8866 6.4252 -3.3279 14 1 1.6476 8.5083 -3.4056 15 7 3.0325 3.1431 0.6250 16 8 2.8049 1.9913 0.9301 17 6 2.0418 -0.7246 1.2487 18 6 3.5716 -0.7851 1.1994 19 6 4.0057 -1.4795 -0.0941 20 8 3.4707 -0.7728 -1.2151 21 6 2.0416 -0.7243 -1.2480 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.3992 4.6095 -2.2779 26 1 3.4254 5.2680 -0.9811 27 1 0.0443 8.5299 -1.1839 28 1 1.7269 -0.1818 2.1401 29 1 1.6375 -1.7365 1.2746 30 1 3.9771 0.2264 1.2237 31 1 3.9417 -1.3475 2.0566 32 1 5.0939 -1.4873 -0.1550 33 1 3.6339 -2.5041 -0.0990 34 1 1.6440 -1.7390 -1.2681 35 1 1.7149 -0.1880 -2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260045154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:53 Heat of formation + Delta-G solvation = 8.340234 kcal Electronic energy + Delta-G solvation = -19107.952130 eV Core-core repulsion = 16109.033296 eV Total energy + Delta-G solvation = -2998.918833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.85456 -39.81188 -35.63777 -35.22905 -33.07743 -32.29516 -31.15437 -29.13393 -27.11777 -25.38006 -23.98807 -23.69915 -22.15591 -21.35259 -19.30586 -17.60410 -16.86203 -16.63836 -16.30558 -16.04000 -15.13435 -14.64784 -14.61644 -14.27276 -13.28470 -13.05066 -12.89940 -12.55870 -12.30977 -12.25185 -12.14099 -11.78593 -11.58719 -11.34859 -11.19614 -10.84139 -10.69781 -10.56509 -10.49963 -10.24606 -10.04979 -9.67323 -9.50832 -8.89560 -8.63614 -6.12796 -4.13574 1.84820 3.12555 3.20543 3.27888 3.34802 3.37736 3.76227 4.11142 4.37148 4.53387 4.54683 4.66942 4.77512 5.00087 5.05499 5.18048 5.20709 5.27482 5.37765 5.45230 5.52293 5.58603 5.68833 5.73975 5.82135 5.94127 6.10772 6.17235 6.49475 6.75196 6.87873 7.02843 7.06773 7.53345 8.38967 8.87376 9.00562 9.44244 11.00041 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.005545 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.750980 B = 5048.304498 C = 5192.157944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.005 3.995 3 C 0.170 3.830 4 N -0.471 5.471 5 C 0.222 3.778 6 C 0.068 3.932 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.878 3.122 12 H -0.273 1.273 13 H -0.263 1.263 14 H -0.283 1.283 15 N -0.400 5.400 16 O 0.063 5.937 17 C -0.116 4.116 18 C -0.165 4.165 19 C 0.057 3.943 20 O -0.376 6.376 21 C 0.075 3.925 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.267 0.733 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -20.906 1.967 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.002 3.998 3 C -0.051 4.051 4 N -0.204 5.204 5 C -0.050 4.050 6 C 0.029 3.971 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.705 3.295 12 H -0.199 1.199 13 H -0.187 1.187 14 H -0.209 1.209 15 N -0.111 5.111 16 O 0.009 5.991 17 C -0.154 4.154 18 C -0.203 4.203 19 C -0.019 4.019 20 O -0.295 6.295 21 C -0.002 4.002 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.396 -19.895 1.885 20.462 hybrid contribution 0.256 0.346 -0.230 0.488 sum 4.652 -19.550 1.655 20.164 Atomic orbital electron populations 1.21835 0.90758 1.02882 1.04327 1.19803 0.97149 0.84082 0.98761 1.28160 0.93238 0.97894 0.85850 1.71791 1.22435 0.99704 1.26484 1.26266 0.91121 0.97497 0.90128 1.18229 0.99302 0.84072 0.95524 1.20693 1.10729 0.98607 1.25433 0.90994 1.24894 0.95344 0.96278 0.96275 1.69884 1.29953 1.10037 1.43400 0.86795 0.81370 0.79401 0.81982 1.19888 1.18718 1.20853 1.74589 1.23946 0.94537 1.18008 1.85225 1.51950 1.18530 1.43422 1.21746 0.95968 1.00893 0.96771 1.22339 0.96002 1.03318 0.98653 1.22636 0.99282 0.94357 0.85655 1.88048 1.19896 1.76354 1.45166 1.22756 0.81276 0.99310 0.96881 0.90499 0.90867 0.91458 0.93143 0.94106 0.92356 0.90207 0.90082 0.90009 0.90240 0.88854 0.93009 0.91436 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.47 37.16 0.31 -1.19 16 2 C 0.00 0.06 0.75 -155.52 -0.12 -0.06 16 3 C 0.17 3.05 5.90 -13.06 -0.08 2.97 16 4 N -0.47 -10.24 11.55 -9.87 -0.11 -10.35 16 5 C 0.22 5.40 7.41 -156.37 -1.16 4.24 16 6 C 0.07 1.76 4.67 -29.03 -0.14 1.62 16 7 C -0.52 -15.35 9.65 -34.44 -0.33 -15.68 16 8 H 0.07 2.36 7.98 -52.49 -0.42 1.94 16 9 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 10 N -0.89 -27.77 13.96 55.43 0.77 -26.99 16 11 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.40 -9.27 12.16 30.90 0.38 -8.90 16 16 O 0.06 1.23 8.88 18.10 0.16 1.39 16 17 C -0.12 -1.12 4.57 -26.55 -0.12 -1.24 16 18 C -0.17 -1.65 5.84 -26.59 -0.16 -1.80 16 19 C 0.06 0.56 6.84 37.21 0.25 0.81 16 20 O -0.38 -4.98 10.45 -35.23 -0.37 -5.35 16 21 C 0.08 0.86 5.54 37.21 0.21 1.07 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 26 H 0.04 1.03 7.57 -51.93 -0.39 0.64 16 27 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.06 5.91 -51.93 -0.31 0.75 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 288.72 15.07 4.35 4.35 Total: -1.00 -34.09 288.72 -5.80 -39.89 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.89 Total: -3.84 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.42 Total: -7.16 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 1.04 Total: -46.24 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.21 Total: -3.96 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.09 -5.80 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.230 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds