Wall clock time and date at job start Mon Mar 30 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.52176 * 2 1 4 4 N 1.31128 * 126.55302 * 299.99604 * 3 2 1 5 5 C 1.34493 * 105.61712 * 179.97438 * 4 3 2 6 6 C 1.50707 * 126.28963 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47007 * 89.99466 * 6 5 4 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 N 1.29941 * 107.42567 * 0.24166 * 5 4 3 16 16 O 1.21302 * 110.25003 * 359.58052 * 15 5 4 17 17 C 1.53179 * 109.52195 * 120.12401 * 2 1 3 18 18 C 1.53177 * 109.03525 * 176.94834 * 17 2 1 19 19 C 1.53092 * 109.16565 * 303.01820 * 18 17 2 20 20 O 1.42910 * 109.41165 * 57.61099 * 19 18 17 21 21 C 1.43034 * 114.13048 * 298.83674 * 20 19 18 22 22 H 1.08999 * 109.47486 * 60.00185 * 1 2 3 23 23 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47337 * 300.00192 * 1 2 3 25 25 H 1.09005 * 109.46877 * 329.99743 * 6 5 4 26 26 H 1.09002 * 109.46993 * 210.00089 * 6 5 4 27 27 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.54374 * 296.81785 * 17 2 1 29 29 H 1.09002 * 109.54186 * 57.08155 * 17 2 1 30 30 H 1.08998 * 109.52071 * 62.92888 * 18 17 2 31 31 H 1.08999 * 109.51976 * 183.11458 * 18 17 2 32 32 H 1.08996 * 109.48240 * 177.59265 * 19 18 17 33 33 H 1.08997 * 109.48084 * 297.62024 * 19 18 17 34 34 H 1.09001 * 109.46912 * 301.19057 * 21 20 19 35 35 H 1.09002 * 109.56815 * 181.11123 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4203 0.0000 4 7 1.7982 2.3324 -0.9123 5 6 2.4439 3.4362 -0.4958 6 6 2.4832 4.7667 -1.2025 7 6 1.3359 5.6212 -0.7287 8 1 0.6474 5.2392 0.0106 9 6 1.1652 6.8907 -1.2390 10 7 0.1642 7.6366 -0.8251 11 14 2.3556 7.5510 -2.5181 12 1 3.4788 8.2444 -1.8378 13 1 2.8866 6.4252 -3.3279 14 1 1.6476 8.5083 -3.4056 15 7 3.0325 3.1431 0.6250 16 8 2.8049 1.9913 0.9301 17 6 2.0418 -0.7246 1.2487 18 6 3.5716 -0.7851 1.1994 19 6 4.0057 -1.4795 -0.0941 20 8 3.4707 -0.7728 -1.2151 21 6 2.0416 -0.7243 -1.2480 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.3992 4.6095 -2.2779 26 1 3.4254 5.2680 -0.9811 27 1 0.0443 8.5299 -1.1839 28 1 1.7269 -0.1818 2.1401 29 1 1.6375 -1.7365 1.2746 30 1 3.9771 0.2264 1.2237 31 1 3.9417 -1.3475 2.0566 32 1 5.0939 -1.4873 -0.1550 33 1 3.6339 -2.5041 -0.0990 34 1 1.6440 -1.7390 -1.2681 35 1 1.7149 -0.1880 -2.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260045154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:52 Heat of formation + Delta-G solvation = -17.731419 kcal Electronic energy + Delta-G solvation = -19109.082681 eV Core-core repulsion = 16109.033296 eV Total energy + Delta-G solvation = -3000.049385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.54845 -40.69859 -37.24595 -36.40706 -35.10768 -33.42683 -32.66238 -31.15332 -27.93822 -26.36012 -25.73601 -25.25233 -23.37390 -22.74200 -20.62640 -19.46654 -18.76642 -18.25733 -17.31596 -17.01452 -16.51892 -16.06386 -15.64285 -15.42790 -15.09854 -14.39315 -14.19153 -13.90299 -13.73712 -13.41884 -13.34928 -13.09542 -12.96813 -12.74083 -12.56948 -12.41053 -12.09103 -12.03478 -11.87943 -11.79457 -11.56825 -11.32245 -10.89835 -10.75688 -10.41171 -8.41424 -6.50648 0.29620 1.33101 1.34987 1.36410 1.47494 1.88588 2.27897 2.72868 2.91628 2.97838 3.24468 3.62394 3.64418 3.77375 4.03436 4.11347 4.27849 4.47627 4.50117 4.58747 4.71436 4.73609 4.73786 4.79885 4.87255 4.91396 4.98443 5.03980 5.15497 5.17574 5.28670 5.33698 5.38360 6.05127 6.25241 6.49376 7.11922 7.34577 8.75400 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.005545 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.750980 B = 5048.304498 C = 5192.157944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.000 4.000 3 C 0.190 3.810 4 N -0.500 5.500 5 C 0.192 3.808 6 C 0.075 3.925 7 C -0.532 4.532 8 H 0.020 0.980 9 C 0.018 3.982 10 N -0.940 5.940 11 Si 0.955 3.045 12 H -0.261 1.261 13 H -0.245 1.245 14 H -0.272 1.272 15 N -0.421 5.421 16 O 0.075 5.925 17 C -0.113 4.113 18 C -0.166 4.166 19 C 0.053 3.947 20 O -0.410 6.410 21 C 0.076 3.924 22 H 0.055 0.945 23 H 0.121 0.879 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.274 0.726 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.042 0.958 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -23.575 1.468 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 C -0.031 4.031 4 N -0.233 5.233 5 C -0.080 4.080 6 C 0.036 3.964 7 C -0.570 4.570 8 H 0.038 0.962 9 C -0.181 4.181 10 N -0.579 5.579 11 Si 0.776 3.224 12 H -0.185 1.185 13 H -0.168 1.168 14 H -0.197 1.197 15 N -0.131 5.131 16 O 0.018 5.982 17 C -0.150 4.150 18 C -0.204 4.204 19 C -0.023 4.023 20 O -0.330 6.330 21 C -0.002 4.002 22 H 0.074 0.926 23 H 0.139 0.861 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.205 -22.574 1.386 23.208 hybrid contribution -0.069 1.039 0.043 1.042 sum 5.136 -21.536 1.429 22.186 Atomic orbital electron populations 1.21880 0.89376 1.05511 1.02776 1.20387 0.98087 0.80619 1.01199 1.29471 0.90558 0.99414 0.83646 1.71737 1.23469 0.99895 1.28163 1.26098 0.92938 0.97949 0.91048 1.18004 0.97852 0.84641 0.95877 1.20782 1.11407 0.99897 1.24960 0.96168 1.25924 0.97355 0.96152 0.98643 1.70025 1.32050 1.10776 1.45046 0.85604 0.78760 0.79216 0.78854 1.18528 1.16797 1.19658 1.74524 1.24551 0.96189 1.17801 1.85190 1.52069 1.17413 1.43490 1.21844 0.95728 1.02755 0.94708 1.22355 0.96232 1.01605 1.00180 1.22857 0.99618 0.95616 0.84237 1.88009 1.20827 1.77351 1.46765 1.22850 0.80839 1.01249 0.95214 0.92627 0.86090 0.92503 0.92505 0.93376 0.91727 0.90763 0.85579 0.93892 0.87409 0.88622 0.89498 0.86743 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.47 71.98 0.61 -2.04 16 2 C 0.00 -0.01 0.75 -52.84 -0.04 -0.05 16 3 C 0.19 6.84 5.90 88.38 0.52 7.36 16 4 N -0.50 -22.42 11.55 -303.21 -3.50 -25.93 16 5 C 0.19 9.67 7.41 138.47 1.03 10.69 16 6 C 0.08 3.99 4.67 29.10 0.14 4.13 16 7 C -0.53 -33.05 9.65 25.60 0.25 -32.80 16 8 H 0.02 1.41 7.98 -2.91 -0.02 1.38 16 9 C 0.02 1.08 5.47 84.66 0.46 1.54 16 10 N -0.94 -60.01 13.96 21.45 0.30 -59.71 16 11 Si 0.95 44.67 27.47 68.60 1.88 46.56 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 13 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 N -0.42 -20.15 12.16 -60.32 -0.73 -20.88 16 16 O 0.07 2.99 8.88 74.81 0.66 3.65 16 17 C -0.11 -1.77 4.57 30.71 0.14 -1.63 16 18 C -0.17 -2.85 5.84 30.68 0.18 -2.67 16 19 C 0.05 0.85 6.84 72.01 0.49 1.35 16 20 O -0.41 -10.03 10.45 -148.98 -1.56 -11.59 16 21 C 0.08 1.53 5.54 72.01 0.40 1.93 16 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.06 2.90 7.20 -2.38 -0.02 2.89 16 26 H 0.05 2.45 7.57 -2.39 -0.02 2.43 16 27 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 1.07 5.91 -2.39 -0.01 1.06 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -79.13 288.72 2.26 -76.87 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.03 Total: 3.22 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 4.17 Total: -12.19 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.94 Total: -106.52 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.89 Total: -7.93 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -79.13 2.26 -76.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260045154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.140 kcal (2) G-P(sol) polarization free energy of solvation -79.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds