Wall clock time and date at job start Mon Mar 30 2020 03:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30010 * 127.33838 * 2 1 4 4 O 1.20655 * 112.30690 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15509 * 359.71725 * 4 3 2 6 6 C 1.37360 * 106.34193 * 0.45076 * 5 4 3 7 7 C 1.47394 * 128.56984 * 179.85119 * 6 5 4 8 8 O 1.21606 * 120.00221 * 179.68031 * 7 6 5 9 9 N 1.34785 * 119.99499 * 359.67796 * 7 6 5 10 10 C 1.46504 * 119.99699 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47198 * 35.00347 * 10 9 7 12 12 C 1.50696 * 109.46968 * 155.00227 * 10 9 7 13 13 H 1.08004 * 119.99776 * 26.27888 * 12 10 9 14 14 C 1.37877 * 120.00108 * 206.54993 * 12 10 9 15 15 N 1.31520 * 119.99983 * 185.32810 * 14 12 10 16 16 Si 1.86797 * 120.00004 * 5.32983 * 14 12 10 17 17 H 1.48500 * 109.47311 * 84.63022 * 16 14 12 18 18 H 1.48496 * 109.47296 * 204.63227 * 16 14 12 19 19 H 1.48507 * 109.47040 * 324.63266 * 16 14 12 20 20 C 1.52997 * 109.47289 * 275.00444 * 10 9 7 21 21 C 1.53001 * 109.46946 * 305.56020 * 20 10 9 22 22 C 1.53001 * 109.47343 * 65.56033 * 20 10 9 23 23 H 1.08997 * 109.47087 * 270.03906 * 1 2 3 24 24 H 1.09000 * 109.46875 * 30.04368 * 1 2 3 25 25 H 1.09006 * 109.47065 * 150.04154 * 1 2 3 26 26 H 1.08003 * 126.83188 * 180.30443 * 5 4 3 27 27 H 0.96996 * 120.00228 * 0.02562 * 9 7 6 28 28 H 0.96997 * 119.99624 * 180.02562 * 15 14 12 29 29 H 1.08997 * 109.47452 * 185.56330 * 20 10 9 30 30 H 1.09006 * 109.47169 * 60.00402 * 21 20 10 31 31 H 1.09008 * 109.47049 * 180.02562 * 21 20 10 32 32 H 1.08994 * 109.47422 * 299.99968 * 21 20 10 33 33 H 1.08997 * 109.47041 * 299.99965 * 22 20 10 34 34 H 1.09003 * 109.46947 * 60.00017 * 22 20 10 35 35 H 1.08994 * 109.47161 * 180.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 2.3992 -1.1697 0.0006 7 6 2.0400 -2.5992 0.0008 8 8 0.8705 -2.9323 0.0004 9 7 3.0080 -3.5372 0.0013 10 6 2.6511 -4.9580 0.0020 11 1 1.7462 -5.1057 -0.5874 12 6 3.7776 -5.7592 -0.5979 13 1 4.7894 -5.3836 -0.5561 14 6 3.5160 -6.9691 -1.2053 15 7 4.5084 -7.7172 -1.6354 16 14 1.7519 -7.5456 -1.4172 17 1 1.1830 -6.9540 -2.6548 18 1 1.7239 -9.0268 -1.5184 19 1 0.9461 -7.1141 -0.2467 20 6 2.4047 -5.4213 1.4392 21 6 3.6255 -5.0873 2.2990 22 6 1.1741 -4.7071 2.0015 23 1 -0.3633 0.0007 1.0276 24 1 -0.3633 0.8896 -0.5145 25 1 -0.3633 -0.8904 -0.5132 26 1 4.5967 -1.1195 0.0133 27 1 3.9409 -3.2714 0.0019 28 1 4.3243 -8.5681 -2.0630 29 1 2.2364 -6.4982 1.4501 30 1 3.7938 -4.0104 2.2882 31 1 3.4501 -5.4178 3.3229 32 1 4.5022 -5.5961 1.8985 33 1 1.3424 -3.6302 1.9907 34 1 0.3044 -4.9450 1.3889 35 1 0.9989 -5.0368 3.0255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260058909.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:08 Heat of formation + Delta-G solvation = -9.539293 kcal Electronic energy + Delta-G solvation = -19109.944767 eV Core-core repulsion = 16110.250619 eV Total energy + Delta-G solvation = -2999.694148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.90263 -40.79608 -37.60294 -35.41322 -34.44727 -34.23500 -32.68782 -29.89292 -29.32193 -27.85261 -25.85365 -24.10460 -22.27344 -21.83401 -20.37461 -19.66431 -18.72846 -18.45437 -17.35027 -17.24293 -16.50369 -16.08208 -15.42834 -14.87879 -14.73882 -14.52378 -14.29714 -14.18674 -14.11367 -13.58894 -13.37982 -12.98655 -12.87883 -12.82185 -12.30557 -12.12780 -12.05166 -11.80129 -11.47864 -11.08564 -10.93928 -10.89354 -10.75616 -10.71989 -9.70793 -8.34262 -6.37319 0.15466 0.76314 1.30542 1.36605 1.45610 2.01345 2.30095 2.30714 2.48454 3.03176 3.09448 3.37845 3.91097 4.10349 4.26545 4.36267 4.39554 4.46895 4.62647 4.64820 4.78748 4.84205 4.91407 5.06065 5.15047 5.17501 5.23155 5.39861 5.43177 5.50751 5.67970 5.78184 6.17110 6.65709 6.86136 7.21451 7.25379 7.42149 8.80171 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.027153 B = 0.006604 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.949164 B = 4238.518510 C = 4358.434645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.055 3.945 3 N -0.380 5.380 4 O 0.097 5.903 5 C 0.026 3.974 6 C -0.278 4.278 7 C 0.584 3.416 8 O -0.571 6.571 9 N -0.688 5.688 10 C 0.254 3.746 11 H 0.025 0.975 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.037 3.963 15 N -0.929 5.929 16 Si 0.912 3.088 17 H -0.279 1.279 18 H -0.283 1.283 19 H -0.250 1.250 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.129 4.129 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.270 0.730 27 H 0.406 0.594 28 H 0.268 0.732 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.031 0.969 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 12.650 5.688 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 N -0.089 5.089 4 O 0.039 5.961 5 C -0.056 4.056 6 C -0.285 4.285 7 C 0.371 3.629 8 O -0.452 6.452 9 N -0.337 5.337 10 C 0.150 3.850 11 H 0.043 0.957 12 C -0.553 4.553 13 H 0.082 0.918 14 C -0.164 4.164 15 N -0.568 5.568 16 Si 0.738 3.262 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.174 1.174 20 C -0.127 4.127 21 C -0.178 4.178 22 C -0.186 4.186 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.285 0.715 27 H 0.242 0.758 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.233 13.536 5.597 15.000 hybrid contribution -0.305 -1.566 -0.522 1.679 sum -3.538 11.970 5.075 13.474 Atomic orbital electron populations 1.20263 0.84311 1.04249 1.04329 1.25172 0.99778 0.86575 0.99209 1.73637 0.89825 1.23862 1.21545 1.84526 1.20899 1.23739 1.66909 1.27162 1.00977 0.82991 0.94444 1.22405 0.94282 0.94848 1.17006 1.17123 0.85560 0.83754 0.76474 1.90732 1.19631 1.82507 1.52327 1.45975 1.09116 1.06383 1.72240 1.18843 0.95151 0.77797 0.93234 0.95728 1.21122 0.94272 1.03678 1.36189 0.91773 1.25436 0.99558 0.96758 0.94620 1.69965 1.32848 1.13032 1.40961 0.86290 0.82567 0.77541 0.79807 1.20450 1.20905 1.17363 1.21670 0.95687 0.98841 0.96522 1.21537 0.97220 1.01049 0.97993 1.21823 0.97113 1.00299 0.99394 0.89052 0.89098 0.90053 0.71483 0.75833 0.92287 0.93153 0.92467 0.92851 0.93163 0.93042 0.94945 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 10.15 71.24 0.72 -1.08 16 2 C 0.05 1.53 7.58 45.16 0.34 1.87 16 3 N -0.38 -10.17 12.01 -44.78 -0.54 -10.71 16 4 O 0.10 2.19 11.06 76.98 0.85 3.04 16 5 C 0.03 0.52 11.85 67.61 0.80 1.32 16 6 C -0.28 -7.77 6.47 -18.74 -0.12 -7.89 16 7 C 0.58 20.36 6.41 86.65 0.56 20.92 16 8 O -0.57 -23.49 12.83 -4.05 -0.05 -23.54 16 9 N -0.69 -24.15 4.02 -449.40 -1.81 -25.95 16 10 C 0.25 10.97 1.49 44.24 0.07 11.03 16 11 H 0.02 1.21 5.24 -2.39 -0.01 1.19 16 12 C -0.51 -25.67 8.07 25.60 0.21 -25.47 16 13 H 0.06 3.36 8.03 -2.91 -0.02 3.33 16 14 C 0.04 1.96 5.47 84.65 0.46 2.42 16 15 N -0.93 -53.38 13.96 21.45 0.30 -53.08 16 16 Si 0.91 42.98 26.27 68.60 1.80 44.79 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.25 -11.37 6.29 99.48 0.63 -10.75 16 20 C -0.11 -4.24 2.40 -10.79 -0.03 -4.26 16 21 C -0.12 -4.06 8.79 71.98 0.63 -3.42 16 22 C -0.13 -4.73 7.81 71.98 0.56 -4.17 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.08 2.25 7.11 -2.38 -0.02 2.23 16 26 H 0.27 2.59 7.68 -2.91 -0.02 2.57 16 27 H 0.41 11.73 7.75 -92.71 -0.72 11.01 16 28 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.05 2.16 6.99 -2.39 -0.02 2.14 16 30 H 0.06 1.69 7.46 -2.38 -0.02 1.68 16 31 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.05 1.85 7.40 -2.39 -0.02 1.84 16 33 H 0.05 1.87 5.63 -2.39 -0.01 1.85 16 34 H 0.03 1.28 7.88 -2.39 -0.02 1.26 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -64.89 289.18 5.07 -59.81 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.31 Total: 14.36 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.20 Total: -8.72 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -2.05 Total: -89.74 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.80 Total: -20.50 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.80 Total: 44.79 kcal Total: -64.89 5.07 -59.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058909.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.275 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds