Wall clock time and date at job start Mon Mar 30 2020 04:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34479 * 126.16372 * 2 1 4 4 C 1.30252 * 108.70236 * 179.97438 * 3 2 1 5 5 O 1.33965 * 108.76086 * 359.73556 * 4 3 2 6 6 C 1.34324 * 126.16811 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.44260 * 359.97438 * 6 2 1 8 8 N 1.46899 * 109.46909 * 90.00405 * 7 6 2 9 9 C 1.47018 * 110.99949 * 293.62939 * 8 7 6 10 10 C 1.53091 * 109.26046 * 177.61119 * 9 8 7 11 11 O 1.43015 * 109.26132 * 56.85088 * 10 9 8 12 12 C 1.43019 * 113.73789 * 301.33167 * 11 10 9 13 13 C 1.47015 * 111.00025 * 170.00249 * 8 7 6 14 14 H 1.09002 * 109.50921 * 62.45295 * 13 8 7 15 15 C 1.50705 * 109.54016 * 302.34195 * 13 8 7 16 16 H 1.07996 * 119.99492 * 0.11326 * 15 13 8 17 17 C 1.37875 * 120.00165 * 180.10685 * 15 13 8 18 18 N 1.31520 * 119.99873 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00002 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47040 * 90.00544 * 19 17 15 21 21 H 1.48507 * 109.46777 * 210.00147 * 19 17 15 22 22 H 1.48499 * 109.47130 * 330.00085 * 19 17 15 23 23 H 1.09000 * 109.46937 * 269.99604 * 1 2 3 24 24 H 1.08995 * 109.47380 * 29.99553 * 1 2 3 25 25 H 1.09003 * 109.46871 * 150.00220 * 1 2 3 26 26 H 1.07999 * 125.62134 * 180.02562 * 4 3 2 27 27 H 1.08992 * 109.47108 * 330.00171 * 7 6 2 28 28 H 1.09001 * 109.46892 * 209.99806 * 7 6 2 29 29 H 1.09008 * 109.50418 * 57.67149 * 9 8 7 30 30 H 1.09004 * 109.54409 * 297.57420 * 9 8 7 31 31 H 1.09004 * 109.50597 * 296.91615 * 10 9 8 32 32 H 1.09002 * 109.50802 * 176.78885 * 10 9 8 33 33 H 1.09005 * 109.50538 * 298.73550 * 12 11 10 34 34 H 1.08997 * 109.54429 * 178.62382 * 12 11 10 35 35 H 0.96994 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5735 -0.6444 0.0068 6 6 2.2998 -1.0844 -0.0005 7 6 1.8494 -2.5225 -0.0006 8 7 1.7027 -2.9895 -1.3856 9 6 0.6050 -2.2862 -2.0653 10 6 0.5259 -2.7590 -3.5192 11 8 0.3571 -4.1790 -3.5450 12 6 1.4086 -4.8957 -2.8923 13 6 1.4967 -4.4444 -1.4320 14 1 0.5703 -4.6976 -0.9164 15 6 2.6529 -5.1389 -0.7596 16 1 3.4599 -4.5584 -0.3377 17 6 2.6802 -6.5152 -0.6830 18 7 1.6976 -7.2221 -1.1972 19 14 4.1130 -7.3760 0.1511 20 1 3.8133 -7.5496 1.5951 21 1 4.3231 -8.7064 -0.4743 22 1 5.3414 -6.5562 -0.0046 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 4.4066 1.3436 0.0011 27 1 0.8917 -2.6033 0.5135 28 1 2.5903 -3.1353 0.5128 29 1 0.7908 -1.2123 -2.0413 30 1 -0.3359 -2.5040 -1.5599 31 1 1.4460 -2.4924 -4.0392 32 1 -0.3221 -2.2827 -4.0112 33 1 2.3545 -4.6912 -3.3941 34 1 1.1999 -5.9648 -2.9310 35 1 1.7170 -8.1904 -1.1437 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260081155.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:44 Heat of formation + Delta-G solvation = -11.749562 kcal Electronic energy + Delta-G solvation = -19362.495228 eV Core-core repulsion = 16362.705236 eV Total energy + Delta-G solvation = -2999.789992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.06960 -38.70507 -35.43173 -34.79079 -33.26353 -31.38463 -30.00489 -28.68781 -26.36333 -25.35097 -23.72052 -22.41190 -21.73612 -20.39543 -19.34958 -16.97913 -16.76018 -16.34259 -15.48280 -15.26436 -14.73213 -14.64030 -14.19867 -13.86055 -13.74588 -13.11515 -13.04763 -12.95023 -12.39891 -12.16974 -11.84946 -11.61321 -11.06721 -10.93599 -10.78432 -10.75090 -10.42840 -10.40087 -10.14193 -9.76446 -9.23547 -8.82379 -8.52983 -8.34965 -7.47162 -6.21191 -4.26542 1.73939 2.86088 3.07722 3.21598 3.29254 3.33141 4.26581 4.33770 4.69034 4.85881 5.07706 5.10784 5.15486 5.51082 5.62739 5.68587 5.73433 5.76684 5.84662 5.95536 6.08240 6.20331 6.21592 6.34002 6.46461 6.56873 6.61226 6.78463 7.14115 7.36974 7.57714 7.71930 7.93846 8.02640 8.06128 8.39747 8.79691 9.39686 10.86593 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.007861 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.246635 B = 3561.082271 C = 4485.878280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.032 4.032 3 N -0.488 5.488 4 C 0.152 3.848 5 O -0.193 6.193 6 C -0.006 4.006 7 C 0.137 3.863 8 N -0.528 5.528 9 C 0.012 3.988 10 C 0.068 3.932 11 O -0.402 6.402 12 C 0.070 3.930 13 C 0.190 3.810 14 H 0.013 0.987 15 C -0.515 4.515 16 H 0.068 0.932 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.244 0.756 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.125 0.875 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 10.744 1.158 10.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.152 4.152 3 N -0.218 5.218 4 C -0.075 4.075 5 O -0.078 6.078 6 C -0.060 4.060 7 C 0.009 3.991 8 N -0.254 5.254 9 C -0.116 4.116 10 C -0.010 4.010 11 O -0.322 6.322 12 C -0.007 4.007 13 C 0.084 3.916 14 H 0.031 0.969 15 C -0.554 4.554 16 H 0.086 0.914 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.260 0.740 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.143 0.857 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.273 11.126 0.790 11.157 hybrid contribution 0.670 -0.993 1.002 1.562 sum 0.397 10.133 1.792 10.298 Atomic orbital electron populations 1.20296 0.86986 1.03524 1.02649 1.21418 0.97733 0.87716 1.08299 1.70259 1.01468 1.31957 1.18115 1.27827 0.97348 0.79868 1.02417 1.84477 1.30506 1.24017 1.68834 1.23591 0.80306 0.98198 1.03904 1.20450 1.00804 0.85381 0.92420 1.62238 1.41963 1.08268 1.12973 1.22968 0.93229 0.98892 0.96555 1.22431 1.00394 0.83558 0.94607 1.87918 1.49363 1.16464 1.78417 1.23143 0.87716 0.98052 0.91752 1.19894 0.97057 0.80254 0.94368 0.96920 1.21051 1.06104 0.91133 1.37076 0.91408 1.24974 0.96300 0.97386 0.95299 1.69834 1.31461 1.06728 1.44847 0.86437 0.82391 0.78913 0.79414 1.20564 1.21017 1.19688 0.91206 0.90925 0.90188 0.74019 0.92178 0.87180 0.90954 0.94699 0.93545 0.90100 0.94705 0.85703 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.47 36.01 0.34 -0.69 16 2 C -0.03 -0.51 6.19 -82.81 -0.51 -1.02 16 3 N -0.49 -7.75 11.29 -11.18 -0.13 -7.88 16 4 C 0.15 2.09 13.23 52.09 0.69 2.78 16 5 O -0.19 -3.29 10.78 5.35 0.06 -3.23 16 6 C -0.01 -0.10 6.29 -35.69 -0.22 -0.32 16 7 C 0.14 2.61 4.99 -4.98 -0.02 2.59 16 8 N -0.53 -11.10 4.52 -229.15 -1.04 -12.14 16 9 C 0.01 0.22 4.07 -3.71 -0.02 0.21 16 10 C 0.07 1.25 7.01 37.20 0.26 1.51 16 11 O -0.40 -9.00 10.83 -35.23 -0.38 -9.38 16 12 C 0.07 1.69 6.02 37.21 0.22 1.91 16 13 C 0.19 4.62 1.97 -68.75 -0.14 4.49 16 14 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 15 C -0.52 -13.34 7.81 -34.44 -0.27 -13.61 16 16 H 0.07 1.76 6.57 -52.49 -0.34 1.41 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.14 11.36 55.43 0.63 -23.51 16 19 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 1.07 4.70 -51.93 -0.24 0.82 16 26 H 0.24 1.99 8.06 -52.49 -0.42 1.57 16 27 H 0.06 1.07 7.77 -51.93 -0.40 0.67 16 28 H 0.11 2.25 6.05 -51.93 -0.31 1.94 16 29 H 0.07 1.22 5.43 -51.92 -0.28 0.94 16 30 H 0.03 0.63 7.26 -51.93 -0.38 0.25 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.13 3.30 6.17 -51.93 -0.32 2.98 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -29.42 281.17 -5.78 -35.20 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.38 Total: 1.95 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 0.24 Total: -0.61 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.53 Total: -43.53 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.32 Total: -12.61 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.42 -5.78 -35.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081155.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.449 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds