Wall clock time and date at job start Mon Mar 30 2020 04:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.42270 * 128.03814 * 2 1 4 4 C 1.48330 * 126.94304 * 0.02562 * 3 2 1 5 5 O 1.21499 * 119.99794 * 0.32662 * 4 3 2 6 6 N 1.34769 * 120.00100 * 180.32953 * 4 3 2 7 7 C 1.46501 * 120.00208 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47400 * 180.02562 * 7 6 4 9 9 H 1.07996 * 120.00426 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99857 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00422 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99941 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47311 * 89.99647 * 12 10 8 14 14 H 1.48500 * 109.47153 * 209.99738 * 12 10 8 15 15 H 1.48503 * 109.47088 * 329.99771 * 12 10 8 16 16 N 1.30990 * 106.11707 * 180.26337 * 3 2 1 17 17 O 1.20897 * 111.44228 * 359.74743 * 16 3 2 18 18 C 1.34018 * 111.84866 * 0.02562 * 17 16 3 19 19 C 1.50697 * 126.66559 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47466 * 60.02334 * 19 18 17 21 21 C 1.53006 * 109.47239 * 300.02045 * 19 18 17 22 22 H 1.08997 * 109.47515 * 270.15484 * 1 2 3 23 23 H 1.08999 * 109.46920 * 30.15358 * 1 2 3 24 24 H 1.08997 * 109.47432 * 150.15018 * 1 2 3 25 25 H 0.97002 * 119.99909 * 359.97438 * 6 4 3 26 26 H 1.09005 * 109.47145 * 300.00076 * 7 6 4 27 27 H 1.08999 * 109.47161 * 59.99645 * 7 6 4 28 28 H 0.96994 * 120.00424 * 180.02562 * 11 10 8 29 29 H 1.08998 * 109.46862 * 180.02562 * 19 18 17 30 30 H 1.09002 * 109.47153 * 59.99773 * 20 19 18 31 31 H 1.09001 * 109.46832 * 299.99964 * 20 19 18 32 32 H 1.09004 * 109.47261 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.47050 * 300.00336 * 21 19 18 34 34 H 1.09001 * 109.47002 * 60.00070 * 21 19 18 35 35 H 1.08993 * 109.46955 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3836 1.1205 0.0000 4 6 1.9993 2.5531 0.0005 5 8 0.8256 2.8672 0.0070 6 7 2.9519 3.5064 -0.0063 7 6 2.5723 4.9214 -0.0052 8 6 3.8143 5.7748 -0.0143 9 1 4.7890 5.3098 -0.0199 10 6 3.7063 7.1493 -0.0144 11 7 2.5194 7.7157 -0.0071 12 14 5.2459 8.2072 -0.0250 13 1 5.6449 8.4866 -1.4278 14 1 4.9717 9.4873 0.6759 15 1 6.3450 7.4886 0.6684 16 7 3.5988 0.6315 -0.0058 17 8 3.5887 -0.5774 -0.0042 18 6 2.3407 -1.0658 0.0024 19 6 1.9432 -2.5194 0.0067 20 6 2.5097 -3.1994 1.2547 21 6 2.4990 -3.2038 -1.2438 22 1 -0.3634 0.0028 1.0276 23 1 -0.3633 0.8886 -0.5162 24 1 -0.3634 -0.8913 -0.5115 25 1 3.8889 3.2557 -0.0111 26 1 1.9763 5.1384 -0.8917 27 1 1.9873 5.1400 0.8882 28 1 2.4434 8.6827 -0.0076 29 1 0.8561 -2.5987 0.0114 30 1 2.1137 -2.7118 2.1456 31 1 3.5968 -3.1200 1.2499 32 1 2.2217 -4.2507 1.2580 33 1 2.0954 -2.7194 -2.1329 34 1 3.5861 -3.1245 -1.2486 35 1 2.2111 -4.2550 -1.2409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260114576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:14 Heat of formation + Delta-G solvation = -0.718314 kcal Electronic energy + Delta-G solvation = -18149.093509 eV Core-core repulsion = 15149.781867 eV Total energy + Delta-G solvation = -2999.311642 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.94534 -38.77234 -36.46351 -34.44107 -34.15042 -32.45199 -31.25128 -28.07878 -27.48253 -27.38909 -24.62973 -22.94460 -21.77734 -21.13351 -19.30818 -17.66179 -17.38806 -16.55190 -15.79821 -15.46215 -15.05139 -14.38731 -14.36106 -14.23109 -13.59041 -13.20770 -13.08257 -12.93171 -12.56340 -12.51146 -12.00907 -11.92661 -11.59067 -11.56998 -11.39391 -11.08627 -10.97569 -10.90400 -10.34695 -10.03483 -9.47573 -9.40893 -9.13240 -8.77206 -7.98621 -6.18505 -4.25494 1.34055 1.82328 3.00642 3.24858 3.30653 3.33754 3.69960 3.73419 4.19290 4.32162 4.50892 4.66357 4.75359 4.87261 5.08993 5.17895 5.23176 5.31394 5.48756 5.50558 5.57055 5.69944 5.72485 5.78911 5.87251 5.91221 5.97311 6.36092 7.21143 7.29113 7.44581 7.62140 7.91914 8.16530 8.53202 8.69832 8.93826 9.40656 10.91751 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.043124 B = 0.004207 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.134816 B = 6653.762225 C = 7106.519866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.148 4.148 3 C -0.015 4.015 4 C 0.578 3.422 5 O -0.536 6.536 6 N -0.691 5.691 7 C 0.249 3.751 8 C -0.545 4.545 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.886 5.886 12 Si 0.906 3.094 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 N -0.334 5.334 17 O 0.120 5.880 18 C -0.045 4.045 19 C -0.008 4.008 20 C -0.150 4.150 21 C -0.150 4.150 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.397 0.603 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.267 0.733 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -22.013 0.003 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.153 4.153 3 C -0.175 4.175 4 C 0.360 3.640 5 O -0.413 6.413 6 N -0.339 5.339 7 C 0.128 3.872 8 C -0.583 4.583 9 H 0.082 0.918 10 C -0.139 4.139 11 N -0.523 5.523 12 Si 0.733 3.267 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.197 1.197 16 N -0.035 5.035 17 O 0.046 5.954 18 C -0.109 4.109 19 C -0.027 4.027 20 C -0.207 4.207 21 C -0.208 4.208 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.231 0.769 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.771 -20.914 0.005 20.928 hybrid contribution 0.552 0.518 0.000 0.757 sum -0.220 -20.396 0.005 20.397 Atomic orbital electron populations 1.20212 0.86783 1.03572 1.03017 1.21031 0.98757 0.89657 1.05849 1.23795 0.89112 0.97962 1.06631 1.16968 0.86269 0.82007 0.78765 1.90728 1.17551 1.81503 1.51560 1.46438 1.08770 1.08593 1.70145 1.19240 0.96779 0.73009 0.98125 1.21211 0.92273 0.91401 1.53426 0.91759 1.24940 0.96644 0.97769 0.94554 1.69967 1.22552 1.10966 1.48804 0.86379 0.82494 0.79582 0.78283 1.20391 1.20937 1.19671 1.74175 1.21753 0.90967 1.16621 1.84718 1.28799 1.15450 1.66474 1.24126 0.83551 0.97532 1.05651 1.19745 1.01353 0.84410 0.97224 1.21885 1.01933 1.00451 0.96454 1.21894 1.02002 1.00436 0.96449 0.90745 0.89198 0.91494 0.76915 0.95030 0.95021 0.92376 0.87950 0.92054 0.91738 0.91401 0.92061 0.91731 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.68 36.01 0.35 -0.65 16 2 C -0.15 -2.21 6.34 -104.12 -0.66 -2.87 16 3 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 4 C 0.58 12.80 7.85 -12.11 -0.10 12.71 16 5 O -0.54 -13.07 15.35 5.37 0.08 -12.99 16 6 N -0.69 -16.05 5.55 -62.28 -0.35 -16.39 16 7 C 0.25 6.78 5.43 -5.20 -0.03 6.75 16 8 C -0.54 -15.23 9.28 -34.44 -0.32 -15.55 16 9 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 10 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 11 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 12 Si 0.91 21.24 29.54 -169.99 -5.02 16.21 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 N -0.33 -5.78 11.84 33.29 0.39 -5.39 16 17 O 0.12 1.73 11.18 17.24 0.19 1.92 16 18 C -0.05 -0.56 5.98 -35.35 -0.21 -0.77 16 19 C -0.01 -0.06 3.31 -91.77 -0.30 -0.37 16 20 C -0.15 -1.03 9.18 37.16 0.34 -0.69 16 21 C -0.15 -1.03 9.18 37.16 0.34 -0.69 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.09 1.35 6.90 -51.93 -0.36 0.99 16 24 H 0.07 0.62 7.40 -51.93 -0.38 0.23 16 25 H 0.40 8.52 8.08 -40.82 -0.33 8.19 16 26 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.10 0.68 7.09 -51.93 -0.37 0.31 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -31.91 305.58 -5.41 -37.32 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.78 Total: 1.51 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.28 Total: -1.28 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.79 Total: -47.30 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.28 Total: -11.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.91 -5.41 -37.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260114576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.602 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds