Wall clock time and date at job start Mon Mar 30 2020 04:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.42332 * 128.03447 * 2 1 4 4 C 1.48166 * 126.95270 * 0.04835 * 3 2 1 5 5 O 1.21544 * 119.99891 * 5.93598 * 4 3 2 6 6 N 1.34783 * 120.00301 * 185.92945 * 4 3 2 7 7 C 1.46499 * 119.99731 * 5.34471 * 6 4 3 8 8 C 1.36772 * 120.00077 * 185.34272 * 6 4 3 9 9 H 1.07996 * 120.00487 * 342.77369 * 8 6 4 10 10 C 1.39114 * 119.99878 * 162.77869 * 8 6 4 11 11 N 1.31318 * 120.00112 * 327.93325 * 10 8 6 12 12 Si 1.86805 * 120.00221 * 147.94201 * 10 8 6 13 13 H 1.48498 * 109.47192 * 94.98659 * 12 10 8 14 14 H 1.48502 * 109.47115 * 214.98836 * 12 10 8 15 15 H 1.48498 * 109.46817 * 334.98597 * 12 10 8 16 16 N 1.31071 * 106.10182 * 180.26517 * 3 2 1 17 17 O 1.20909 * 111.41584 * 359.78914 * 16 3 2 18 18 C 1.34027 * 111.86151 * 359.97438 * 17 16 3 19 19 C 1.50706 * 126.65259 * 179.97438 * 18 17 16 20 20 C 1.52992 * 109.47250 * 60.02745 * 19 18 17 21 21 C 1.53000 * 109.46874 * 300.02448 * 19 18 17 22 22 H 1.08994 * 109.47435 * 270.08552 * 1 2 3 23 23 H 1.09005 * 109.47550 * 30.08404 * 1 2 3 24 24 H 1.09004 * 109.47400 * 150.08253 * 1 2 3 25 25 H 1.09006 * 109.47202 * 35.44501 * 7 6 4 26 26 H 1.08998 * 109.47412 * 155.44221 * 7 6 4 27 27 H 1.08997 * 109.47277 * 275.44400 * 7 6 4 28 28 H 0.96994 * 120.00357 * 180.02562 * 11 10 8 29 29 H 1.09003 * 109.46892 * 180.02562 * 19 18 17 30 30 H 1.09003 * 109.47299 * 299.99905 * 20 19 18 31 31 H 1.09002 * 109.47325 * 179.97438 * 20 19 18 32 32 H 1.08998 * 109.47564 * 59.99748 * 20 19 18 33 33 H 1.09002 * 109.46832 * 179.97438 * 21 19 18 34 34 H 1.08999 * 109.47279 * 299.99754 * 21 19 18 35 35 H 1.08993 * 109.47068 * 60.00345 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3839 1.1211 0.0000 4 6 2.0001 2.5521 0.0010 5 8 0.8316 2.8678 0.1108 6 7 2.9468 3.5039 -0.1197 7 6 4.3396 3.1242 -0.3692 8 6 2.6072 4.8242 -0.0094 9 1 1.5747 5.1260 -0.1047 10 6 3.5919 5.7784 0.2256 11 7 4.6517 5.4671 0.9358 12 14 3.4064 7.5026 -0.4689 13 1 2.8019 8.3878 0.5588 14 1 4.7415 8.0283 -0.8517 15 1 2.5285 7.4622 -1.6659 16 7 3.5998 0.6315 -0.0058 17 8 3.5889 -0.5775 -0.0051 18 6 2.3406 -1.0654 0.0020 19 6 1.9427 -2.5190 0.0044 20 6 2.5101 -3.2010 1.2509 21 6 2.4972 -3.2016 -1.2475 22 1 -0.3634 0.0015 1.0276 23 1 -0.3634 0.8892 -0.5151 24 1 -0.3634 -0.8907 -0.5126 25 1 4.3668 2.2458 -1.0140 26 1 4.8594 3.9489 -0.8567 27 1 4.8289 2.8952 0.5775 28 1 5.3380 6.1325 1.1000 29 1 0.8556 -2.5981 0.0101 30 1 3.5973 -3.1219 1.2453 31 1 2.2220 -4.2522 1.2529 32 1 2.1151 -2.7147 2.1428 33 1 2.2099 -4.2530 -1.2455 34 1 2.0929 -2.7157 -2.1355 35 1 3.5843 -3.1224 -1.2532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260116506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:16 Heat of formation + Delta-G solvation = 25.573963 kcal Electronic energy + Delta-G solvation = -18897.971540 eV Core-core repulsion = 15899.800017 eV Total energy + Delta-G solvation = -2998.171523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.41736 -38.30296 -36.18369 -34.82677 -33.72549 -31.98777 -30.70747 -27.60774 -27.28458 -26.39151 -25.22088 -23.43204 -21.95648 -20.62153 -18.59582 -17.19699 -16.97839 -16.41723 -15.79274 -15.11744 -14.75456 -14.16251 -13.92149 -13.86729 -13.34874 -12.89329 -12.79394 -12.57959 -12.31986 -12.28482 -11.89762 -11.60925 -11.42360 -11.36082 -11.23929 -11.10831 -10.90566 -10.56720 -10.34300 -10.29421 -9.48405 -9.05098 -8.73116 -8.61617 -7.82278 -6.57399 -3.86036 1.80717 2.30024 3.12479 3.20826 3.29297 3.44945 4.01109 4.21883 4.48733 4.65362 4.82497 4.97632 4.98536 5.06018 5.26580 5.41996 5.49296 5.61401 5.69810 5.74239 5.82583 6.00005 6.01689 6.09185 6.11424 6.20530 6.28388 6.50942 6.72777 6.77509 7.10379 7.44501 8.00641 8.35149 8.72858 9.06511 9.29166 9.90356 10.48024 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.043539 B = 0.005460 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.951335 B = 5127.282960 C = 5498.514131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.156 4.156 3 C 0.010 3.990 4 C 0.494 3.506 5 O -0.582 6.582 6 N -0.409 5.409 7 C 0.105 3.895 8 C -0.322 4.322 9 H 0.109 0.891 10 C 0.043 3.957 11 N -0.840 5.840 12 Si 0.915 3.085 13 H -0.275 1.275 14 H -0.280 1.280 15 H -0.265 1.265 16 N -0.344 5.344 17 O 0.099 5.901 18 C -0.054 4.054 19 C -0.006 4.006 20 C -0.148 4.148 21 C -0.149 4.149 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.273 0.727 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -14.843 -2.553 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.161 4.161 3 C -0.149 4.149 4 C 0.282 3.718 5 O -0.467 6.467 6 N -0.125 5.125 7 C -0.039 4.039 8 C -0.450 4.450 9 H 0.127 0.873 10 C -0.165 4.165 11 N -0.475 5.475 12 Si 0.739 3.261 13 H -0.201 1.201 14 H -0.205 1.205 15 H -0.189 1.189 16 N -0.051 5.051 17 O 0.032 5.968 18 C -0.117 4.117 19 C -0.026 4.026 20 C -0.206 4.206 21 C -0.206 4.206 22 H 0.088 0.912 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.859 -14.021 -2.435 14.257 hybrid contribution -0.428 0.791 -0.125 0.908 sum -1.287 -13.230 -2.559 13.536 Atomic orbital electron populations 1.20112 0.87376 1.02891 1.02549 1.20974 0.98439 0.90048 1.06654 1.23892 0.88388 0.98266 1.04378 1.16614 0.86389 0.81459 0.87351 1.90570 1.17581 1.80733 1.57810 1.43534 1.06733 1.05710 1.56545 1.21655 0.83076 0.98575 1.00627 1.19663 0.96319 0.80006 1.48989 0.87345 1.25345 0.95762 1.00504 0.94923 1.70167 1.10927 1.36821 1.29610 0.86131 0.78036 0.81669 0.80218 1.20075 1.20509 1.18929 1.74430 1.21712 0.90140 1.18803 1.84716 1.28447 1.16266 1.67417 1.23971 0.84211 0.97085 1.06483 1.19668 1.01061 0.84973 0.96881 1.21865 1.01889 1.00134 0.96693 1.21873 1.01947 1.00151 0.96629 0.91226 0.89472 0.92142 0.93347 0.91442 0.92594 0.91698 0.88331 0.91832 0.91706 0.92150 0.91711 0.92190 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 9.64 36.01 0.35 -0.80 16 2 C -0.16 -2.91 6.34 -104.11 -0.66 -3.57 16 3 C 0.01 0.22 6.80 -82.54 -0.56 -0.34 16 4 C 0.49 13.30 7.64 -12.18 -0.09 13.21 16 5 O -0.58 -16.71 15.06 5.33 0.08 -16.63 16 6 N -0.41 -11.29 3.01 -123.17 -0.37 -11.66 16 7 C 0.10 2.59 7.78 59.85 0.47 3.06 16 8 C -0.32 -9.22 9.25 -15.02 -0.14 -9.36 16 9 H 0.11 3.21 7.43 -52.49 -0.39 2.82 16 10 C 0.04 1.15 4.55 -17.45 -0.08 1.07 16 11 N -0.84 -22.78 11.73 55.50 0.65 -22.13 16 12 Si 0.91 20.29 29.66 -169.99 -5.04 15.24 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 N -0.34 -7.33 8.96 33.29 0.30 -7.03 16 17 O 0.10 1.78 11.18 17.21 0.19 1.97 16 18 C -0.05 -0.85 5.98 -35.36 -0.21 -1.06 16 19 C -0.01 -0.07 3.31 -91.77 -0.30 -0.37 16 20 C -0.15 -1.39 9.17 37.15 0.34 -1.05 16 21 C -0.15 -1.35 9.18 37.16 0.34 -1.01 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.09 1.60 7.02 -51.93 -0.36 1.23 16 24 H 0.06 0.73 7.40 -51.93 -0.38 0.35 16 25 H 0.05 1.11 5.97 -51.93 -0.31 0.80 16 26 H 0.07 1.68 6.76 -51.93 -0.35 1.32 16 27 H 0.06 1.44 8.05 -51.93 -0.42 1.02 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.10 0.92 7.09 -51.93 -0.37 0.55 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 295.57 15.07 4.45 4.45 Total: -1.00 -31.79 295.57 -4.97 -36.76 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.68 Total: -0.76 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.55 Total: -0.23 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.58 Total: -40.82 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.27 Total: -14.66 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.04 Total: 15.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.79 -4.97 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.336 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds