Wall clock time and date at job start Mon Mar 30 2020 04:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.42332 * 128.03447 * 2 1 4 4 C 1.48166 * 126.95270 * 0.04835 * 3 2 1 5 5 O 1.21544 * 119.99891 * 5.93598 * 4 3 2 6 6 N 1.34783 * 120.00301 * 185.92945 * 4 3 2 7 7 C 1.46499 * 119.99731 * 5.34471 * 6 4 3 8 8 C 1.36772 * 120.00077 * 185.34272 * 6 4 3 9 9 H 1.07996 * 120.00487 * 342.77369 * 8 6 4 10 10 C 1.39114 * 119.99878 * 162.77869 * 8 6 4 11 11 N 1.31318 * 120.00112 * 327.93325 * 10 8 6 12 12 Si 1.86805 * 120.00221 * 147.94201 * 10 8 6 13 13 H 1.48498 * 109.47192 * 94.98659 * 12 10 8 14 14 H 1.48502 * 109.47115 * 214.98836 * 12 10 8 15 15 H 1.48498 * 109.46817 * 334.98597 * 12 10 8 16 16 N 1.31071 * 106.10182 * 180.26517 * 3 2 1 17 17 O 1.20909 * 111.41584 * 359.78914 * 16 3 2 18 18 C 1.34027 * 111.86151 * 359.97438 * 17 16 3 19 19 C 1.50706 * 126.65259 * 179.97438 * 18 17 16 20 20 C 1.52992 * 109.47250 * 60.02745 * 19 18 17 21 21 C 1.53000 * 109.46874 * 300.02448 * 19 18 17 22 22 H 1.08994 * 109.47435 * 270.08552 * 1 2 3 23 23 H 1.09005 * 109.47550 * 30.08404 * 1 2 3 24 24 H 1.09004 * 109.47400 * 150.08253 * 1 2 3 25 25 H 1.09006 * 109.47202 * 35.44501 * 7 6 4 26 26 H 1.08998 * 109.47412 * 155.44221 * 7 6 4 27 27 H 1.08997 * 109.47277 * 275.44400 * 7 6 4 28 28 H 0.96994 * 120.00357 * 180.02562 * 11 10 8 29 29 H 1.09003 * 109.46892 * 180.02562 * 19 18 17 30 30 H 1.09003 * 109.47299 * 299.99905 * 20 19 18 31 31 H 1.09002 * 109.47325 * 179.97438 * 20 19 18 32 32 H 1.08998 * 109.47564 * 59.99748 * 20 19 18 33 33 H 1.09002 * 109.46832 * 179.97438 * 21 19 18 34 34 H 1.08999 * 109.47279 * 299.99754 * 21 19 18 35 35 H 1.08993 * 109.47068 * 60.00345 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3839 1.1211 0.0000 4 6 2.0001 2.5521 0.0010 5 8 0.8316 2.8678 0.1108 6 7 2.9468 3.5039 -0.1197 7 6 4.3396 3.1242 -0.3692 8 6 2.6072 4.8242 -0.0094 9 1 1.5747 5.1260 -0.1047 10 6 3.5919 5.7784 0.2256 11 7 4.6517 5.4671 0.9358 12 14 3.4064 7.5026 -0.4689 13 1 2.8019 8.3878 0.5588 14 1 4.7415 8.0283 -0.8517 15 1 2.5285 7.4622 -1.6659 16 7 3.5998 0.6315 -0.0058 17 8 3.5889 -0.5775 -0.0051 18 6 2.3406 -1.0654 0.0020 19 6 1.9427 -2.5190 0.0044 20 6 2.5101 -3.2010 1.2509 21 6 2.4972 -3.2016 -1.2475 22 1 -0.3634 0.0015 1.0276 23 1 -0.3634 0.8892 -0.5151 24 1 -0.3634 -0.8907 -0.5126 25 1 4.3668 2.2458 -1.0140 26 1 4.8594 3.9489 -0.8567 27 1 4.8289 2.8952 0.5775 28 1 5.3380 6.1325 1.1000 29 1 0.8556 -2.5981 0.0101 30 1 3.5973 -3.1219 1.2453 31 1 2.2220 -4.2522 1.2529 32 1 2.1151 -2.7147 2.1428 33 1 2.2099 -4.2530 -1.2455 34 1 2.0929 -2.7157 -2.1355 35 1 3.5843 -3.1224 -1.2532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260116506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:15 Heat of formation + Delta-G solvation = 5.627734 kcal Electronic energy + Delta-G solvation = -18898.836474 eV Core-core repulsion = 15899.800017 eV Total energy + Delta-G solvation = -2999.036456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.01483 -40.36034 -37.27760 -36.79986 -35.30340 -33.96239 -32.21277 -29.00954 -28.43363 -27.97499 -27.19030 -25.06260 -23.25992 -22.19176 -20.26322 -19.07179 -18.77985 -17.84551 -17.62003 -16.77402 -16.27673 -15.99932 -15.84589 -15.04581 -14.56401 -14.31586 -14.13340 -13.98652 -13.80262 -13.74743 -13.48667 -13.23752 -12.96837 -12.75800 -12.50200 -12.22279 -12.18162 -12.13633 -12.10506 -11.72419 -11.16901 -11.07906 -10.71994 -10.11426 -9.91592 -8.62251 -6.03544 0.25310 0.74801 1.34903 1.39197 1.54347 2.10056 2.18465 2.26044 2.70921 2.91581 3.19160 3.55909 3.81247 3.99071 4.17573 4.20721 4.35472 4.46784 4.60208 4.74284 4.75830 4.77978 4.87330 4.90251 5.02118 5.02273 5.04788 5.18851 5.33649 5.38412 5.42136 5.44939 5.88767 6.26566 6.93266 7.16458 7.25551 7.81456 8.44705 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.043539 B = 0.005460 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.951335 B = 5127.282960 C = 5498.514131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.175 4.175 3 C -0.031 4.031 4 C 0.484 3.516 5 O -0.612 6.612 6 N -0.427 5.427 7 C 0.124 3.876 8 C -0.371 4.371 9 H 0.084 0.916 10 C 0.013 3.987 11 N -0.865 5.865 12 Si 0.990 3.010 13 H -0.268 1.268 14 H -0.261 1.261 15 H -0.267 1.267 16 N -0.359 5.359 17 O 0.118 5.882 18 C -0.024 4.024 19 C -0.006 4.006 20 C -0.148 4.148 21 C -0.147 4.147 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.106 0.894 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.283 0.717 29 H 0.123 0.877 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 -16.951 -3.016 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.180 4.180 3 C -0.188 4.188 4 C 0.274 3.726 5 O -0.500 6.500 6 N -0.144 5.144 7 C -0.019 4.019 8 C -0.498 4.498 9 H 0.102 0.898 10 C -0.194 4.194 11 N -0.500 5.500 12 Si 0.811 3.189 13 H -0.193 1.193 14 H -0.186 1.186 15 H -0.191 1.191 16 N -0.062 5.062 17 O 0.046 5.954 18 C -0.088 4.088 19 C -0.025 4.025 20 C -0.205 4.205 21 C -0.204 4.204 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.124 0.876 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.722 -16.095 -2.889 16.368 hybrid contribution -0.454 1.237 0.069 1.320 sum -1.176 -14.858 -2.820 15.169 Atomic orbital electron populations 1.20146 0.85671 1.03539 1.03086 1.21327 0.99784 0.89271 1.07590 1.23604 0.90329 0.97154 1.07681 1.17212 0.86032 0.83201 0.86193 1.90514 1.18732 1.81973 1.58746 1.43758 1.07650 1.05793 1.57182 1.21476 0.81791 0.98753 0.99914 1.19658 0.96118 0.81375 1.52614 0.89780 1.26246 0.94895 1.04347 0.93874 1.70190 1.11585 1.38699 1.29498 0.85032 0.78683 0.76072 0.79142 1.19343 1.18554 1.19144 1.74380 1.21447 0.91581 1.18832 1.84674 1.29883 1.14921 1.65967 1.24883 0.82162 0.98933 1.02824 1.20064 1.02651 0.81302 0.98507 1.21892 1.01413 1.01834 0.95358 1.21895 1.01500 1.01798 0.95243 0.90705 0.92675 0.87558 0.91824 0.92028 0.94085 0.90686 0.85918 0.92452 0.88467 0.93024 0.88541 0.92710 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 9.64 71.24 0.69 -1.40 16 2 C -0.17 -6.38 6.34 -19.53 -0.12 -6.50 16 3 C -0.03 -1.43 6.80 42.92 0.29 -1.14 16 4 C 0.48 27.40 7.64 86.88 0.66 28.06 16 5 O -0.61 -37.19 15.06 -3.85 -0.06 -37.25 16 6 N -0.43 -24.74 3.01 -661.88 -1.99 -26.73 16 7 C 0.12 6.38 7.78 127.77 0.99 7.37 16 8 C -0.37 -22.22 9.25 84.13 0.78 -21.44 16 9 H 0.08 5.31 7.43 -2.91 -0.02 5.29 16 10 C 0.01 0.72 4.55 84.98 0.39 1.10 16 11 N -0.86 -47.58 11.73 21.69 0.25 -47.32 16 12 Si 0.99 42.09 29.66 68.60 2.03 44.12 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 N -0.36 -15.41 8.96 -49.48 -0.44 -15.86 16 17 O 0.12 4.10 11.18 71.77 0.80 4.90 16 18 C -0.02 -0.71 5.98 25.00 0.15 -0.56 16 19 C -0.01 -0.11 3.31 -11.54 -0.04 -0.14 16 20 C -0.15 -2.18 9.17 71.98 0.66 -1.52 16 21 C -0.15 -2.06 9.18 71.98 0.66 -1.40 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.05 2.06 7.02 -2.38 -0.02 2.05 16 24 H 0.11 2.22 7.40 -2.38 -0.02 2.20 16 25 H 0.06 3.00 5.97 -2.38 -0.01 2.99 16 26 H 0.06 3.15 6.76 -2.39 -0.02 3.14 16 27 H 0.04 2.18 8.05 -2.39 -0.02 2.16 16 28 H 0.28 14.16 8.31 -92.71 -0.77 13.38 16 29 H 0.12 1.63 7.09 -2.39 -0.02 1.62 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -73.05 295.57 6.80 -66.25 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.09 Total: 9.45 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.11 Total: 2.43 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -2.18 Total: -89.91 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: 0.74 Total: -32.35 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.05 6.80 -66.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260116506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.880 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds