Wall clock time and date at job start Mon Mar 30 2020 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30261 * 125.61753 * 2 1 4 4 C 1.34475 * 108.70201 * 180.02562 * 3 2 1 5 5 C 1.34335 * 107.66871 * 0.02562 * 4 3 2 6 6 C 1.50693 * 126.44436 * 180.02562 * 5 4 3 7 7 N 1.46890 * 109.47508 * 89.99771 * 6 5 4 8 8 C 1.47016 * 111.00239 * 66.04360 * 7 6 5 9 9 C 1.53095 * 109.26218 * 182.39479 * 8 7 6 10 10 O 1.43020 * 109.29124 * 303.13039 * 9 8 7 11 11 C 1.43091 * 113.68830 * 58.65137 * 10 9 8 12 12 C 1.47013 * 111.00431 * 189.68380 * 7 6 5 13 13 H 1.09000 * 109.50641 * 297.53969 * 12 7 6 14 14 C 1.50699 * 109.50711 * 57.66951 * 12 7 6 15 15 H 1.07991 * 120.00332 * 0.02562 * 14 12 7 16 16 C 1.37880 * 119.99507 * 180.02562 * 14 12 7 17 17 N 1.31513 * 120.00716 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99400 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47455 * 89.99909 * 18 16 14 20 20 H 1.48501 * 109.47105 * 209.99904 * 18 16 14 21 21 H 1.48497 * 109.47268 * 329.99838 * 18 16 14 22 22 O 1.33966 * 125.62128 * 180.34294 * 2 1 3 23 23 H 1.08989 * 109.47400 * 89.97075 * 1 2 3 24 24 H 1.08999 * 109.46574 * 209.97841 * 1 2 3 25 25 H 1.09003 * 109.47009 * 329.96638 * 1 2 3 26 26 H 1.08003 * 126.16606 * 179.97438 * 4 3 2 27 27 H 1.09007 * 109.47491 * 329.99354 * 6 5 4 28 28 H 1.09007 * 109.47057 * 210.00376 * 6 5 4 29 29 H 1.09008 * 109.50469 * 62.46058 * 8 7 6 30 30 H 1.09003 * 109.50515 * 302.33528 * 8 7 6 31 31 H 1.09002 * 109.50646 * 63.08857 * 9 8 7 32 32 H 1.09003 * 109.50955 * 183.17410 * 9 8 7 33 33 H 1.08995 * 109.49266 * 181.41560 * 11 10 9 34 34 H 1.08998 * 109.53565 * 61.32062 * 11 10 9 35 35 H 0.96997 * 120.00235 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 3.5698 -0.6756 -0.0015 6 6 4.7937 -1.5548 -0.0018 7 7 5.1912 -1.8414 1.3829 8 6 4.1753 -2.6565 2.0647 9 6 4.5999 -2.8807 3.5184 10 8 5.8917 -3.4941 3.5441 11 6 6.9058 -2.7264 2.8886 12 6 6.5045 -2.5006 1.4285 13 1 6.4483 -3.4599 0.9140 14 6 7.5301 -1.6262 0.7541 15 1 7.2368 -0.6757 0.3338 16 6 8.8428 -2.0400 0.6737 17 7 9.2002 -3.1974 1.1860 18 14 10.1142 -0.9559 -0.1615 19 1 10.7228 -0.0444 0.8406 20 1 11.1720 -1.8070 -0.7632 21 1 9.4587 -0.1544 -1.2260 22 8 2.2873 -1.0890 -0.0065 23 1 -0.3633 0.0005 -1.0275 24 1 -0.3632 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5144 26 1 4.4156 1.3164 -0.0011 27 1 5.6082 -1.0436 -0.5153 28 1 4.5697 -2.4892 -0.5165 29 1 4.0818 -3.6183 1.5604 30 1 3.2168 -2.1379 2.0413 31 1 4.6414 -1.9230 4.0373 32 1 3.8782 -3.5313 4.0123 33 1 7.8521 -3.2660 2.9267 34 1 7.0151 -1.7643 3.3890 35 1 10.1238 -3.4882 1.1298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260131016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:16 Heat of formation + Delta-G solvation = -37.203200 kcal Electronic energy + Delta-G solvation = -19059.230749 eV Core-core repulsion = 16058.337004 eV Total energy + Delta-G solvation = -3000.893745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.29725 -40.38084 -36.94765 -35.73622 -35.12087 -33.16425 -31.73247 -30.50700 -27.83905 -27.07457 -24.93366 -24.13121 -23.10474 -21.90496 -21.11501 -18.72083 -17.92952 -17.89583 -17.21025 -16.91930 -16.40419 -15.89676 -15.84046 -15.42924 -14.92086 -14.75093 -14.62515 -14.06321 -13.77746 -13.73580 -13.37821 -13.13717 -12.84925 -12.68337 -12.54988 -12.26115 -12.18211 -12.10349 -11.64620 -11.57558 -11.09659 -10.74015 -10.36315 -9.67369 -9.21633 -8.20171 -6.32826 0.45494 1.44968 1.46669 1.56105 1.66274 1.72484 2.39369 3.02743 3.07155 3.20723 3.29579 3.76111 4.02467 4.15525 4.19087 4.25470 4.33392 4.51919 4.57808 4.66688 4.67549 4.71519 4.77431 4.82239 4.89934 5.02249 5.08924 5.23304 5.44228 5.45673 5.61272 5.87037 6.11900 6.30057 6.53026 6.74628 6.79400 7.37275 8.87540 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.006946 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.638454 B = 4030.158247 C = 5009.568971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.182 3.818 3 N -0.512 5.512 4 C -0.034 4.034 5 C -0.039 4.039 6 C 0.151 3.849 7 N -0.533 5.533 8 C 0.023 3.977 9 C 0.064 3.936 10 O -0.416 6.416 11 C 0.081 3.919 12 C 0.198 3.802 13 H -0.026 1.026 14 C -0.527 4.527 15 H 0.072 0.928 16 C 0.018 3.982 17 N -0.919 5.919 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.264 1.264 22 O -0.214 6.214 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.189 0.811 27 H 0.115 0.885 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 4.026 -1.314 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.025 4.025 3 N -0.242 5.242 4 C -0.172 4.172 5 C -0.092 4.092 6 C 0.023 3.977 7 N -0.259 5.259 8 C -0.106 4.106 9 C -0.013 4.013 10 O -0.336 6.336 11 C 0.005 3.995 12 C 0.091 3.909 13 H -0.008 1.008 14 C -0.565 4.565 15 H 0.090 0.910 16 C -0.182 4.182 17 N -0.558 5.558 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.188 1.188 22 O -0.102 6.102 23 H 0.129 0.871 24 H 0.124 0.876 25 H 0.130 0.870 26 H 0.206 0.794 27 H 0.133 0.867 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.181 4.737 -0.954 14.982 hybrid contribution 1.313 -0.908 -0.917 1.841 sum -12.868 3.829 -1.871 13.556 Atomic orbital electron populations 1.20534 0.77786 1.06470 1.06184 1.27399 0.98121 0.78110 0.98867 1.70446 1.02258 1.31275 1.20227 1.23186 0.95305 0.93207 1.05539 1.23375 0.83008 0.95638 1.07141 1.20349 0.89939 0.96374 0.91053 1.62286 1.03104 1.46159 1.14361 1.22760 0.95905 0.95503 0.96408 1.22726 0.85253 0.98620 0.94691 1.87898 1.18899 1.48755 1.78036 1.22797 0.90776 0.94091 0.91863 1.19637 0.85563 0.91890 0.93802 1.00833 1.21284 0.92996 1.04939 1.37253 0.91027 1.25755 1.00401 0.96210 0.95808 1.69968 1.18717 1.21216 1.45915 0.85435 0.78308 0.78440 0.78776 1.20091 1.21104 1.18838 1.84389 1.16856 1.38529 1.70404 0.87119 0.87618 0.86958 0.79364 0.86715 0.94491 0.95610 0.89896 0.92922 0.86377 0.88338 0.95119 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.18 4.89 8.34 88.34 0.74 5.63 16 3 N -0.51 -16.27 11.29 -303.82 -3.43 -19.70 16 4 C -0.03 -1.15 11.80 83.40 0.98 -0.16 16 5 C -0.04 -1.34 5.94 24.79 0.15 -1.20 16 6 C 0.15 5.83 5.31 85.56 0.45 6.28 16 7 N -0.53 -22.74 4.52 -878.93 -3.97 -26.72 16 8 C 0.02 0.85 5.47 86.31 0.47 1.32 16 9 C 0.06 2.31 7.01 72.01 0.50 2.81 16 10 O -0.42 -18.92 10.83 -148.98 -1.61 -20.53 16 11 C 0.08 4.07 6.02 72.02 0.43 4.50 16 12 C 0.20 9.94 1.97 44.18 0.09 10.02 16 13 H -0.03 -1.47 8.14 -2.39 -0.02 -1.49 16 14 C -0.53 -27.38 7.80 25.60 0.20 -27.18 16 15 H 0.07 3.60 6.57 -2.91 -0.02 3.58 16 16 C 0.02 0.96 5.31 84.66 0.45 1.40 16 17 N -0.92 -51.03 11.37 21.45 0.24 -50.79 16 18 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 O -0.21 -6.74 10.14 -3.76 -0.04 -6.78 16 23 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.19 5.86 8.06 -2.91 -0.02 5.84 16 27 H 0.11 4.60 6.06 -2.38 -0.01 4.58 16 28 H 0.04 1.44 8.12 -2.38 -0.02 1.42 16 29 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 2.81 6.72 -2.39 -0.02 2.80 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.10 5.43 6.19 -2.39 -0.01 5.42 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -63.07 289.66 -0.48 -63.56 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.09 Total: 13.95 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.22 Total: 3.44 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -7.16 Total: -97.21 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.65 Total: -27.31 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -63.07 -0.48 -63.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260131016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.353 kcal (2) G-P(sol) polarization free energy of solvation -63.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds