Wall clock time and date at job start Mon Mar 30 2020 04:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30253 * 125.61930 * 2 1 4 4 C 1.34479 * 108.69826 * 179.83991 * 3 2 1 5 5 C 1.34325 * 107.67048 * 0.42362 * 4 3 2 6 6 C 1.50702 * 126.44394 * 179.76679 * 5 4 3 7 7 N 1.46901 * 109.47067 * 90.00273 * 6 5 4 8 8 C 1.47019 * 110.99571 * 293.63398 * 7 6 5 9 9 C 1.53097 * 109.25420 * 177.61011 * 8 7 6 10 10 O 1.43020 * 109.26181 * 56.84981 * 9 8 7 11 11 C 1.43014 * 113.73318 * 301.32872 * 10 9 8 12 12 C 1.47010 * 111.00120 * 170.00211 * 7 6 5 13 13 H 1.09004 * 109.50601 * 62.45108 * 12 7 6 14 14 C 1.50705 * 109.50279 * 302.36680 * 12 7 6 15 15 H 1.07994 * 120.00396 * 0.02562 * 14 12 7 16 16 C 1.37878 * 119.99540 * 179.97438 * 14 12 7 17 17 N 1.31513 * 119.99871 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 120.00314 * 0.02562 * 16 14 12 19 19 H 1.48502 * 109.46917 * 89.99948 * 18 16 14 20 20 H 1.48500 * 109.47344 * 209.99771 * 18 16 14 21 21 H 1.48495 * 109.47043 * 329.99851 * 18 16 14 22 22 O 1.33971 * 125.62002 * 180.31225 * 2 1 3 23 23 H 1.09002 * 109.47152 * 269.69041 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69141 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69122 * 1 2 3 26 26 H 1.08001 * 126.16199 * 180.17385 * 4 3 2 27 27 H 1.09000 * 109.46974 * 209.99971 * 6 5 4 28 28 H 1.09000 * 109.47374 * 330.00054 * 6 5 4 29 29 H 1.09000 * 109.50693 * 297.54088 * 8 7 6 30 30 H 1.08998 * 109.50788 * 57.67934 * 8 7 6 31 31 H 1.09005 * 109.50937 * 296.90980 * 9 8 7 32 32 H 1.09002 * 109.54196 * 176.80559 * 9 8 7 33 33 H 1.08997 * 109.51075 * 298.73108 * 11 10 9 34 34 H 1.09004 * 109.50409 * 178.60557 * 11 10 9 35 35 H 0.96998 * 120.00671 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0036 5 6 3.5698 -0.6757 -0.0037 6 6 4.7937 -1.5549 -0.0080 7 7 5.1909 -1.8481 1.3756 8 6 5.6455 -0.6304 2.0624 9 6 5.9920 -0.9693 3.5147 10 8 6.9800 -2.0033 3.5350 11 6 6.5700 -3.2041 2.8752 12 6 6.2294 -2.8879 1.4166 13 1 7.1223 -2.5308 0.9034 14 6 5.7219 -4.1330 0.7360 15 1 4.7277 -4.1511 0.3145 16 6 6.5272 -5.2489 0.6505 17 7 6.0846 -6.3353 0.0562 18 14 8.2471 -5.2175 1.3789 19 1 8.1943 -5.6696 2.7924 20 1 9.1304 -6.1238 0.6019 21 1 8.7838 -3.8341 1.3214 22 8 2.2873 -1.0890 -0.0059 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5090 26 1 4.4156 1.3161 0.0071 27 1 4.5697 -2.4869 -0.5269 28 1 5.6083 -1.0414 -0.5188 29 1 6.5291 -0.2373 1.5597 30 1 4.8520 0.1166 2.0425 31 1 5.0960 -1.3118 4.0323 32 1 6.3834 -0.0822 4.0127 33 1 5.6909 -3.6117 3.3742 34 1 7.3797 -3.9331 2.9101 35 1 6.6512 -7.1203 -0.0043 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260131019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:18 Heat of formation + Delta-G solvation = -29.603122 kcal Electronic energy + Delta-G solvation = -19117.463761 eV Core-core repulsion = 16116.899580 eV Total energy + Delta-G solvation = -3000.564181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.31365 -40.59169 -37.08524 -35.74461 -35.11695 -33.20972 -32.34984 -30.61536 -28.08723 -27.10805 -24.98578 -24.03167 -23.11122 -21.97150 -21.14436 -19.14117 -18.11855 -17.92642 -17.42810 -17.04110 -16.38386 -16.02157 -15.97871 -15.38408 -15.09138 -14.87995 -14.69039 -14.57763 -13.81364 -13.77660 -13.54858 -13.28210 -13.03417 -12.74906 -12.56985 -12.28868 -12.15534 -11.96226 -11.66808 -11.43961 -11.29080 -10.89827 -10.52067 -9.71048 -9.24777 -8.36767 -6.42799 0.43920 1.26131 1.32760 1.40958 1.63732 1.75403 2.23094 2.86927 2.92262 3.06794 3.19276 3.79787 4.01003 4.03677 4.12058 4.19858 4.23657 4.34725 4.43804 4.56280 4.59442 4.64647 4.66805 4.77267 4.80030 4.86088 5.02633 5.06850 5.17110 5.31126 5.41976 5.83004 6.03921 6.15059 6.48960 6.64230 6.72861 7.21720 8.78817 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.006933 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.941881 B = 4037.717736 C = 4759.414758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.178 3.822 3 N -0.507 5.507 4 C -0.039 4.039 5 C -0.036 4.036 6 C 0.144 3.856 7 N -0.535 5.535 8 C 0.013 3.987 9 C 0.062 3.938 10 O -0.405 6.405 11 C 0.066 3.934 12 C 0.166 3.834 13 H 0.005 0.995 14 C -0.515 4.515 15 H 0.049 0.951 16 C 0.026 3.974 17 N -0.935 5.935 18 Si 0.930 3.070 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.252 1.252 22 O -0.215 6.215 23 H 0.108 0.892 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.203 0.797 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.129 0.871 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 13.782 2.569 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.028 4.028 3 N -0.237 5.237 4 C -0.177 4.177 5 C -0.090 4.090 6 C 0.016 3.984 7 N -0.261 5.261 8 C -0.115 4.115 9 C -0.014 4.014 10 O -0.325 6.325 11 C -0.011 4.011 12 C 0.058 3.942 13 H 0.023 0.977 14 C -0.553 4.553 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.574 5.574 18 Si 0.757 3.243 19 H -0.187 1.187 20 H -0.214 1.214 21 H -0.176 1.176 22 O -0.103 6.103 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.135 0.865 26 H 0.220 0.780 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.544 14.004 2.851 15.329 hybrid contribution 1.473 -1.123 -0.512 1.922 sum -4.071 12.881 2.340 13.710 Atomic orbital electron populations 1.20523 0.78194 1.06380 1.06068 1.27366 0.98199 0.78094 0.99150 1.70436 1.02296 1.30786 1.20228 1.23316 0.95673 0.92462 1.06273 1.23438 0.83383 0.95344 1.06807 1.20276 0.89319 0.97931 0.90863 1.61955 1.40486 1.08735 1.14942 1.22953 0.99928 0.92564 0.96063 1.22838 0.92058 0.91407 0.95138 1.87864 1.42691 1.24455 1.77442 1.23079 0.98851 0.86197 0.92964 1.20076 0.89654 0.90961 0.93469 0.97746 1.21007 1.01569 0.96317 1.36430 0.93322 1.25660 1.01788 0.94787 0.95106 1.69986 1.38893 1.03976 1.44552 0.86134 0.80324 0.79116 0.78772 1.18715 1.21421 1.17577 1.84445 1.17360 1.38800 1.69657 0.87360 0.88147 0.86505 0.78028 0.90132 0.90309 0.93559 0.88731 0.92895 0.85327 0.93026 0.90885 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.90 10.51 71.24 0.75 -0.15 16 2 C 0.18 5.09 8.34 88.34 0.74 5.83 16 3 N -0.51 -15.36 11.29 -303.82 -3.43 -18.79 16 4 C -0.04 -1.15 10.38 83.39 0.87 -0.28 16 5 C -0.04 -1.25 6.29 24.79 0.16 -1.10 16 6 C 0.14 5.46 5.31 85.56 0.45 5.91 16 7 N -0.54 -21.60 4.52 -878.92 -3.97 -25.58 16 8 C 0.01 0.41 5.40 86.31 0.47 0.87 16 9 C 0.06 1.91 7.01 72.01 0.50 2.41 16 10 O -0.41 -15.72 10.83 -148.98 -1.61 -17.33 16 11 C 0.07 2.89 5.74 72.01 0.41 3.31 16 12 C 0.17 7.72 1.56 44.18 0.07 7.79 16 13 H 0.01 0.24 7.19 -2.38 -0.02 0.22 16 14 C -0.52 -28.39 8.38 25.60 0.21 -28.17 16 15 H 0.05 3.00 6.82 -2.91 -0.02 2.98 16 16 C 0.03 1.46 5.45 84.66 0.46 1.92 16 17 N -0.94 -56.29 13.96 21.45 0.30 -55.99 16 18 Si 0.93 43.06 24.35 68.60 1.67 44.73 16 19 H -0.26 -11.54 6.90 99.48 0.69 -10.85 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 22 O -0.22 -7.67 10.78 -3.71 -0.04 -7.71 16 23 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.20 4.73 8.06 -2.91 -0.02 4.70 16 27 H 0.08 3.61 6.04 -2.39 -0.01 3.60 16 28 H 0.08 2.66 8.12 -2.39 -0.02 2.64 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 2.67 6.22 -2.39 -0.01 2.66 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 3.29 3.39 -2.39 -0.01 3.28 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -68.11 281.78 -0.98 -69.09 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.02 Total: 13.24 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.09 Total: -1.67 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -7.11 Total: -100.36 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.65 Total: -25.04 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.67 Total: 44.73 kcal Total: -68.11 -0.98 -69.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260131019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.485 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds