Wall clock time and date at job start Mon Mar 30 2020 04:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09004 * 109.47057 * 55.00109 * 5 4 2 7 7 C 1.50705 * 109.47541 * 174.99649 * 5 4 2 8 8 H 1.07996 * 120.00742 * 240.00310 * 7 5 4 9 9 C 1.37877 * 119.99426 * 60.00129 * 7 5 4 10 10 N 1.31516 * 120.00292 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 120.00076 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46883 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47183 * 120.00034 * 11 9 7 14 14 H 1.48501 * 109.47258 * 240.00550 * 11 9 7 15 15 N 1.46498 * 109.47321 * 295.00158 * 5 4 2 16 16 C 1.34783 * 119.99964 * 154.99833 * 15 5 4 17 17 O 1.21592 * 120.00166 * 359.97438 * 16 15 5 18 18 C 1.47457 * 119.99651 * 179.97438 * 16 15 5 19 19 N 1.31292 * 125.70255 * 179.97438 * 18 16 15 20 20 C 1.33454 * 108.70447 * 179.97438 * 19 18 16 21 21 C 1.35246 * 107.83898 * 0.02562 * 20 19 18 22 22 O 1.34311 * 107.21198 * 359.77517 * 21 20 19 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.96996 * 120.00339 * 180.02562 * 10 9 7 33 33 H 0.96992 * 120.00062 * 334.99652 * 15 5 4 34 34 H 1.07994 * 126.08386 * 180.02562 * 20 19 18 35 35 H 1.07994 * 126.39550 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5562 -2.2706 -1.0528 7 6 2.0292 -2.8783 -2.4724 8 1 1.2749 -3.3413 -3.0914 9 6 3.3527 -2.9120 -2.8574 10 7 4.2713 -2.3486 -2.1035 11 14 3.8411 -3.7578 -4.4497 12 1 2.6299 -4.3079 -5.1096 13 1 4.4930 -2.7752 -5.3524 14 1 4.7885 -4.8622 -4.1532 15 7 2.3147 -2.8421 -0.0628 16 6 1.7789 -3.9395 0.5074 17 8 0.7313 -4.3926 0.0880 18 6 2.4631 -4.5907 1.6396 19 7 2.0434 -5.6594 2.2764 20 6 2.9196 -5.9561 3.2383 21 6 3.9120 -5.0384 3.1923 22 8 3.6243 -4.1919 2.1900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6443 -1.2952 32 1 5.2024 -2.3720 -2.3744 33 1 3.1501 -2.4805 0.2719 34 1 2.8489 -6.7821 3.9305 35 1 4.7767 -4.9967 3.8379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260135923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:48 Heat of formation + Delta-G solvation = -26.102541 kcal Electronic energy + Delta-G solvation = -19034.858250 eV Core-core repulsion = 16034.445866 eV Total energy + Delta-G solvation = -3000.412384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.07386 -38.61690 -36.32294 -34.61082 -33.58311 -32.01802 -30.14299 -28.38129 -26.61320 -25.17569 -23.98238 -22.33336 -21.27025 -19.99699 -18.97856 -17.94818 -16.57581 -16.41775 -16.06066 -15.06493 -14.71829 -14.36133 -14.11874 -13.71226 -13.38644 -13.18584 -12.94144 -12.55872 -12.06642 -11.70473 -11.31020 -11.18267 -11.03823 -10.97378 -10.76362 -10.54430 -10.37026 -10.04866 -9.87334 -9.67373 -9.48641 -9.16584 -8.78865 -8.59129 -7.71730 -6.17570 -4.26258 1.34021 2.66594 2.87927 3.21952 3.31655 3.38174 3.77944 4.02826 4.34031 4.93678 5.05833 5.13280 5.42249 5.55146 5.62186 5.68362 5.95634 5.98842 6.08911 6.30483 6.31183 6.34007 6.38707 6.62551 6.69355 6.73524 6.85510 7.08597 7.19288 7.61816 7.70339 7.78382 7.93645 8.18416 8.57485 8.83021 9.15566 9.44878 10.84940 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.009277 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.746933 B = 3017.331507 C = 4177.462520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.113 4.113 5 C 0.261 3.739 6 H 0.050 0.950 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.075 3.925 10 N -0.886 5.886 11 Si 0.894 3.106 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.284 1.284 15 N -0.659 5.659 16 C 0.595 3.405 17 O -0.515 6.515 18 C 0.164 3.836 19 N -0.436 5.436 20 C -0.050 4.050 21 C -0.071 4.071 22 O -0.184 6.184 23 H 0.058 0.942 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.263 0.737 33 H 0.397 0.603 34 H 0.186 0.814 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 2.253 9.011 9.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.199 4.199 4 C -0.152 4.152 5 C 0.161 3.839 6 H 0.068 0.932 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.128 4.128 10 N -0.524 5.524 11 Si 0.722 3.278 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.210 1.210 15 N -0.307 5.307 16 C 0.374 3.626 17 O -0.392 6.392 18 C -0.043 4.043 19 N -0.168 5.168 20 C -0.192 4.192 21 C -0.143 4.143 22 O -0.068 6.068 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.203 0.797 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.612 1.779 8.448 8.655 hybrid contribution 1.729 -0.248 -0.253 1.765 sum 2.341 1.531 8.196 8.660 Atomic orbital electron populations 1.21877 0.96376 1.01789 1.00255 1.21255 0.95100 0.95461 1.00321 1.21806 1.00782 0.96867 1.00400 1.21905 1.04150 0.94662 0.94447 1.18906 0.92321 0.89161 0.83480 0.93226 1.21549 0.93189 1.35947 1.05460 0.91909 1.24990 0.96534 0.94340 0.96946 1.69779 1.01231 1.43522 1.37828 0.86496 0.78661 0.79342 0.83322 1.19544 1.20859 1.21036 1.46673 1.25511 1.25656 1.32873 1.16189 0.84527 0.82068 0.79853 1.90800 1.22446 1.63843 1.62096 1.26857 0.83895 0.94426 0.99123 1.70417 1.28419 1.11655 1.06284 1.23514 0.92717 1.02587 1.00396 1.25375 1.02988 0.92622 0.93362 1.84554 1.36493 1.47834 1.37948 0.92288 0.94188 0.93159 0.92247 0.94033 0.92968 0.93225 0.92433 0.88495 0.92715 0.76839 0.79704 0.76676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.95 37.16 0.33 -2.05 16 2 C -0.10 -1.78 2.86 -90.62 -0.26 -2.04 16 3 C -0.14 -2.11 9.19 37.16 0.34 -1.77 16 4 C -0.11 -2.35 3.92 -26.74 -0.10 -2.45 16 5 C 0.26 6.15 2.01 -69.08 -0.14 6.01 16 6 H 0.05 1.21 5.78 -51.93 -0.30 0.91 16 7 C -0.52 -13.85 8.87 -34.44 -0.31 -14.16 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.08 1.95 5.23 -17.82 -0.09 1.86 16 10 N -0.89 -22.47 10.62 55.43 0.59 -21.88 16 11 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 N -0.66 -14.86 3.85 -56.00 -0.22 -15.08 16 16 C 0.59 13.93 7.77 -12.50 -0.10 13.83 16 17 O -0.52 -13.65 16.74 5.28 0.09 -13.56 16 18 C 0.16 3.39 8.07 -14.03 -0.11 3.28 16 19 N -0.44 -8.65 11.25 -11.79 -0.13 -8.78 16 20 C -0.05 -0.72 11.88 -17.91 -0.21 -0.94 16 21 C -0.07 -0.92 12.19 29.67 0.36 -0.56 16 22 O -0.18 -3.23 10.52 5.02 0.05 -3.17 16 23 H 0.06 1.06 6.46 -51.93 -0.34 0.73 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.06 7.62 -51.93 -0.40 0.66 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.10 2.19 6.22 -51.92 -0.32 1.87 16 32 H 0.26 6.46 8.31 -40.82 -0.34 6.13 16 33 H 0.40 8.62 8.04 -40.82 -0.33 8.29 16 34 H 0.19 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 300.01 15.07 4.52 4.52 Total: -1.00 -29.85 300.01 -5.02 -34.87 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.61 Total: 6.33 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.29 Total: 1.00 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.24 Total: -45.74 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.14 Total: -16.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.85 -5.02 -34.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260135923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.763 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds