Wall clock time and date at job start Mon Mar 30 2020 04:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.50700 * 109.46862 * 185.00281 * 5 4 2 8 8 H 1.08000 * 119.99789 * 239.99605 * 7 5 4 9 9 C 1.37871 * 120.00393 * 60.00067 * 7 5 4 10 10 N 1.31516 * 119.99870 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 120.00303 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47286 * 59.99886 * 11 9 7 13 13 H 1.48501 * 109.47429 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46992 * 299.99904 * 11 9 7 15 15 N 1.46501 * 109.47107 * 65.00275 * 5 4 2 16 16 C 1.34782 * 119.99806 * 274.99740 * 15 5 4 17 17 O 1.21597 * 119.99881 * 0.02562 * 16 15 5 18 18 C 1.47454 * 119.99770 * 179.97438 * 16 15 5 19 19 N 1.31283 * 125.70433 * 180.02562 * 18 16 15 20 20 C 1.33452 * 108.70925 * 179.97438 * 19 18 16 21 21 C 1.35239 * 107.83431 * 359.97438 * 20 19 18 22 22 O 1.34304 * 107.21449 * 359.77451 * 21 20 19 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 31 31 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 32 32 H 0.97001 * 120.00374 * 180.02562 * 10 9 7 33 33 H 0.96991 * 119.99991 * 94.99907 * 15 5 4 34 34 H 1.07997 * 126.08508 * 180.02562 * 20 19 18 35 35 H 1.08002 * 126.39585 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1879 6 1 3.9954 0.1611 -1.0526 7 6 4.0774 -1.4303 -2.4722 8 1 4.6329 -2.3562 -2.4521 9 6 3.8371 -0.7964 -3.6727 10 7 3.1603 0.3309 -3.6972 11 14 4.4730 -1.5388 -5.2645 12 1 3.8869 -2.8907 -5.4491 13 1 4.0841 -0.6713 -6.4054 14 1 5.9530 -1.6448 -5.2047 15 7 3.9480 -1.6873 -0.0625 16 6 4.0652 -1.1631 1.1737 17 8 3.8526 0.0203 1.3549 18 6 4.4502 -2.0250 2.3064 19 7 4.5962 -1.6344 3.5513 20 6 4.9486 -2.6873 4.2917 21 6 5.0215 -3.7625 3.4747 22 8 4.7043 -3.3445 2.2384 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6054 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1369 32 1 2.9909 0.7767 -4.5419 33 1 4.1172 -2.6313 -0.2070 34 1 5.1406 -2.6819 5.3545 35 1 5.2818 -4.7702 3.7632 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260135926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:50 Heat of formation + Delta-G solvation = -18.999641 kcal Electronic energy + Delta-G solvation = -19075.106235 eV Core-core repulsion = 16075.001855 eV Total energy + Delta-G solvation = -3000.104379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.30820 -39.17226 -35.87551 -34.79132 -33.64913 -32.47977 -30.34829 -28.26411 -26.21508 -25.09789 -24.22306 -22.55373 -21.37337 -19.97835 -18.90067 -18.34512 -16.72759 -16.67849 -15.85244 -15.36683 -14.81165 -14.57810 -14.50951 -13.47867 -13.31122 -13.20536 -12.97872 -12.51620 -11.61689 -11.40215 -11.34950 -11.17775 -11.06827 -11.02319 -10.61015 -10.57929 -10.30836 -10.15024 -9.84161 -9.48546 -9.45147 -8.98394 -8.96830 -8.54311 -8.00025 -6.16547 -4.26483 1.09347 2.44495 2.62639 3.23778 3.29487 3.29955 3.54179 3.66049 4.30359 4.78355 4.87288 5.05595 5.14706 5.70998 5.73120 5.89200 5.92072 6.02883 6.13194 6.47810 6.59204 6.66364 6.75027 6.94847 7.00617 7.05720 7.17769 7.36604 7.42914 7.49901 7.62522 7.72177 7.87839 8.11154 8.46345 8.63720 8.87404 9.39854 10.88229 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.007197 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.248983 B = 3889.413369 C = 4828.508710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.118 4.118 5 C 0.268 3.732 6 H 0.060 0.940 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.070 3.930 10 N -0.878 5.878 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 N -0.686 5.686 16 C 0.594 3.406 17 O -0.491 6.491 18 C 0.156 3.844 19 N -0.428 5.428 20 C -0.048 4.048 21 C -0.065 4.065 22 O -0.188 6.188 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.105 0.895 32 H 0.266 0.734 33 H 0.395 0.605 34 H 0.188 0.812 35 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -7.430 9.638 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.184 4.184 4 C -0.157 4.157 5 C 0.168 3.832 6 H 0.078 0.922 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.134 4.134 10 N -0.515 5.515 11 Si 0.729 3.271 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.202 1.202 15 N -0.335 5.335 16 C 0.374 3.626 17 O -0.365 6.365 18 C -0.052 4.052 19 N -0.160 5.160 20 C -0.190 4.190 21 C -0.137 4.137 22 O -0.072 6.072 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.205 0.795 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.340 -5.773 9.680 11.276 hybrid contribution 0.540 -1.794 -0.829 2.049 sum 0.881 -7.568 8.852 11.679 Atomic orbital electron populations 1.21851 0.97578 1.00133 1.00402 1.21232 0.93363 0.97418 0.99438 1.21704 1.02783 0.95231 0.98668 1.22082 0.96952 0.98544 0.98091 1.19068 0.92041 0.91137 0.80996 0.92198 1.21142 1.36414 1.09468 0.90687 0.91993 1.24844 0.94740 0.94774 0.99043 1.69875 1.38617 1.16140 1.26848 0.86505 0.79296 0.79015 0.82283 1.20166 1.21092 1.20181 1.46529 1.66136 1.13780 1.07046 1.16236 0.79825 0.85749 0.80805 1.90886 1.49750 1.13331 1.82557 1.26675 1.03410 0.79298 0.95790 1.70415 1.13689 1.30832 1.01055 1.23555 1.05497 0.88140 1.01845 1.25429 1.04787 1.01849 0.81683 1.84527 1.64231 1.25854 1.32580 0.93178 0.94009 0.94199 0.92644 0.95297 0.90918 0.93936 0.94818 0.87681 0.92400 0.77190 0.79486 0.76441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.19 37.16 0.34 -2.27 16 2 C -0.10 -2.03 2.38 -90.62 -0.22 -2.25 16 3 C -0.13 -2.75 8.03 37.16 0.30 -2.45 16 4 C -0.12 -2.72 4.20 -26.73 -0.11 -2.83 16 5 C 0.27 6.40 2.15 -69.08 -0.15 6.25 16 6 H 0.06 1.62 5.92 -51.93 -0.31 1.32 16 7 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 10 N -0.88 -23.51 11.29 55.43 0.63 -22.88 16 11 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 N -0.69 -14.03 5.02 -56.00 -0.28 -14.31 16 16 C 0.59 12.18 6.37 -12.50 -0.08 12.10 16 17 O -0.49 -11.33 12.03 5.28 0.06 -11.27 16 18 C 0.16 2.78 8.07 -14.03 -0.11 2.67 16 19 N -0.43 -7.48 11.25 -11.80 -0.13 -7.62 16 20 C -0.05 -0.60 11.88 -17.92 -0.21 -0.81 16 21 C -0.06 -0.70 12.19 29.66 0.36 -0.34 16 22 O -0.19 -2.76 10.52 5.05 0.05 -2.70 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.22 5.19 -51.93 -0.27 0.95 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.73 4.75 -51.93 -0.25 1.48 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.39 7.20 8.30 -40.82 -0.34 6.86 16 34 H 0.19 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.22 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 290.58 15.07 4.38 4.38 Total: -1.00 -29.43 290.58 -4.98 -34.42 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.39 Total: 7.12 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.28 Total: -2.17 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.21 Total: -44.81 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.12 Total: -13.97 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.43 -4.98 -34.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260135926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.416 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds