Wall clock time and date at job start Mon Mar 30 2020 03:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33490 * 126.82660 * 2 1 4 4 N 1.20667 * 113.15616 * 179.97438 * 3 2 1 5 5 C 1.30011 * 112.29963 * 359.71507 * 4 3 2 6 6 C 1.37357 * 126.82996 * 179.97438 * 2 1 3 7 7 C 1.47398 * 128.56542 * 359.97438 * 6 2 1 8 8 O 1.21606 * 120.00046 * 6.94947 * 7 6 2 9 9 N 1.34781 * 119.99731 * 186.94733 * 7 6 2 10 10 C 1.46496 * 120.00310 * 0.03960 * 9 7 6 11 11 C 1.46504 * 119.99402 * 180.02562 * 9 7 6 12 12 C 1.52998 * 109.47457 * 287.16823 * 11 9 7 13 13 C 1.52998 * 109.47304 * 47.17424 * 11 9 7 14 14 C 1.50703 * 109.46604 * 167.17486 * 11 9 7 15 15 H 1.07994 * 120.00495 * 359.53564 * 14 11 9 16 16 C 1.37887 * 119.99886 * 179.54164 * 14 11 9 17 17 N 1.31508 * 119.99614 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 119.99819 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47079 * 89.99987 * 18 16 14 20 20 H 1.48502 * 109.46942 * 209.99311 * 18 16 14 21 21 H 1.48489 * 109.47501 * 329.99526 * 18 16 14 22 22 H 1.09006 * 109.46817 * 270.02019 * 1 2 3 23 23 H 1.08995 * 109.47087 * 30.02172 * 1 2 3 24 24 H 1.08997 * 109.46922 * 150.02507 * 1 2 3 25 25 H 1.07998 * 127.33541 * 180.30805 * 5 4 3 26 26 H 1.08998 * 109.47135 * 175.91596 * 10 9 7 27 27 H 1.08996 * 109.47162 * 295.91883 * 10 9 7 28 28 H 1.09000 * 109.47204 * 55.92186 * 10 9 7 29 29 H 1.08997 * 109.47550 * 180.02562 * 12 11 9 30 30 H 1.08997 * 109.47311 * 300.00718 * 12 11 9 31 31 H 1.09008 * 109.46906 * 60.00103 * 12 11 9 32 32 H 1.08995 * 109.46967 * 299.99924 * 13 11 9 33 33 H 1.08999 * 109.46894 * 59.99799 * 13 11 9 34 34 H 1.09002 * 109.46737 * 179.97438 * 13 11 9 35 35 H 0.97002 * 120.00189 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3071 1.0685 0.0000 4 7 3.4796 0.7833 0.0005 5 6 3.6747 -0.5020 0.0069 6 6 2.3304 -1.0994 0.0005 7 6 1.9587 -2.5258 0.0016 8 8 0.7937 -2.8507 -0.1251 9 7 2.9101 -3.4699 0.1432 10 6 4.3134 -3.0785 0.2967 11 6 2.5407 -4.8876 0.1437 12 6 1.8418 -5.2321 1.4605 13 6 1.5940 -5.1685 -1.0249 14 6 3.7818 -5.7301 -0.0015 15 1 4.7481 -5.2567 -0.0933 16 6 3.6835 -7.1053 -0.0173 17 7 2.5069 -7.6818 0.0950 18 14 5.2218 -8.1495 -0.1980 19 1 5.7751 -8.4526 1.1463 20 1 4.8803 -9.4182 -0.8901 21 1 6.2327 -7.4081 -0.9937 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5141 24 1 -0.3633 -0.8902 -0.5134 25 1 4.6219 -1.0207 0.0134 26 1 4.9214 -3.9665 0.4697 27 1 4.6521 -2.5772 -0.6099 28 1 4.4109 -2.4007 1.1447 29 1 1.5674 -6.2869 1.4611 30 1 2.5163 -5.0320 2.2930 31 1 0.9441 -4.6227 1.5656 32 1 0.6964 -4.5591 -0.9198 33 1 2.0920 -4.9231 -1.9629 34 1 1.3195 -6.2234 -1.0246 35 1 2.4377 -8.6492 0.0842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260141162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:50 Heat of formation + Delta-G solvation = 52.246316 kcal Electronic energy + Delta-G solvation = -19402.182301 eV Core-core repulsion = 16405.167378 eV Total energy + Delta-G solvation = -2997.014923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.70867 -39.29596 -35.78188 -34.04420 -33.12944 -32.67552 -30.35684 -27.77721 -26.76943 -25.60878 -24.97736 -24.03246 -22.20119 -19.97838 -18.64823 -17.59217 -16.79223 -16.62071 -15.66823 -15.51388 -14.57105 -14.23856 -14.06390 -13.35059 -13.20321 -13.13361 -12.55320 -12.46143 -12.40609 -11.92985 -11.64940 -11.13389 -11.12061 -11.08554 -10.88056 -10.48771 -10.36014 -10.17547 -9.84946 -9.78337 -9.26316 -9.15268 -8.58733 -8.35874 -7.64759 -6.13232 -4.25901 1.34217 2.01255 3.03067 3.20333 3.28115 3.28885 3.78300 3.83278 4.29779 4.54106 4.55942 4.92938 5.14585 5.18179 5.46410 5.50538 5.72280 5.76266 5.92147 5.99114 6.14155 6.36480 6.71626 6.90268 6.91244 7.25570 7.28682 7.51314 7.59586 7.61668 7.76702 8.01065 8.23220 8.32002 8.53740 8.75023 8.99027 9.42565 10.88214 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.037018 B = 0.006432 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.207188 B = 4352.288764 C = 4898.378024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 O 0.083 5.917 4 N -0.367 5.367 5 C 0.009 3.991 6 C -0.248 4.248 7 C 0.581 3.419 8 O -0.539 6.539 9 N -0.576 5.576 10 C 0.058 3.942 11 C 0.293 3.707 12 C -0.142 4.142 13 C -0.155 4.155 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.878 5.878 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.112 0.888 25 H 0.210 0.790 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.085 0.915 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 10.910 0.522 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 O 0.024 5.976 4 N -0.074 5.074 5 C -0.173 4.173 6 C -0.255 4.255 7 C 0.368 3.632 8 O -0.420 6.420 9 N -0.305 5.305 10 C -0.086 4.086 11 C 0.213 3.787 12 C -0.200 4.200 13 C -0.213 4.213 14 C -0.572 4.572 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.515 5.515 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.109 0.891 23 H 0.099 0.901 24 H 0.130 0.870 25 H 0.227 0.773 26 H 0.129 0.871 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.051 11.570 0.456 11.579 hybrid contribution 0.913 -1.342 -0.083 1.625 sum 0.861 10.228 0.373 10.271 Atomic orbital electron populations 1.20556 0.82901 1.05372 1.04554 1.24783 0.96187 0.85214 0.97180 1.84502 1.11490 1.33600 1.68043 1.73631 0.96012 1.17988 1.19738 1.27234 1.00092 0.89223 1.00753 1.22545 0.92256 0.96478 1.14242 1.16870 0.85691 0.82570 0.78072 1.90639 1.18383 1.81289 1.51704 1.48184 1.05791 1.08199 1.68368 1.22335 0.84994 1.02618 0.98621 1.18281 0.94220 0.73146 0.93088 1.22058 0.97450 1.03705 0.96792 1.22244 0.98993 1.03822 0.96235 1.21396 0.92516 0.91122 1.52191 0.90947 1.24846 0.96264 0.97710 0.94448 1.69836 1.22504 1.10284 1.48870 0.86483 0.82782 0.79826 0.78241 1.20551 1.21054 1.19864 0.89113 0.90110 0.87001 0.77322 0.87120 0.93509 0.93513 0.88952 0.95772 0.95852 0.92595 0.96184 0.89672 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.07 36.01 0.36 -0.52 16 2 C 0.03 0.45 7.55 -34.63 -0.26 0.19 16 3 O 0.08 1.22 11.06 18.66 0.21 1.42 16 4 N -0.37 -5.65 12.01 31.81 0.38 -5.27 16 5 C 0.01 0.13 10.23 -14.73 -0.15 -0.02 16 6 C -0.25 -4.22 6.27 -102.89 -0.64 -4.87 16 7 C 0.58 11.88 7.14 -12.53 -0.09 11.79 16 8 O -0.54 -12.06 11.53 5.27 0.06 -12.00 16 9 N -0.58 -12.15 2.82 -169.15 -0.48 -12.62 16 10 C 0.06 0.98 8.14 59.84 0.49 1.47 16 11 C 0.29 7.11 0.73 -132.97 -0.10 7.02 16 12 C -0.14 -3.47 8.35 37.16 0.31 -3.16 16 13 C -0.15 -3.90 7.93 37.16 0.29 -3.60 16 14 C -0.53 -13.39 7.47 -34.44 -0.26 -13.65 16 15 H 0.07 1.72 5.01 -52.49 -0.26 1.45 16 16 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 17 N -0.88 -23.27 9.35 55.43 0.52 -22.75 16 18 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.11 1.49 6.68 -51.93 -0.35 1.15 16 25 H 0.21 2.66 4.86 -52.49 -0.26 2.41 16 26 H 0.11 2.01 4.82 -51.93 -0.25 1.76 16 27 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 28 H 0.05 0.69 6.60 -51.93 -0.34 0.35 16 29 H 0.09 2.43 6.03 -51.93 -0.31 2.11 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.55 7.16 -51.92 -0.37 0.18 16 32 H 0.06 1.40 5.36 -51.93 -0.28 1.12 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 2.28 6.11 -51.93 -0.32 1.97 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 276.66 15.07 4.17 4.17 Total: -1.00 -28.73 276.66 -4.20 -32.93 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.90 Total: 2.96 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.14 Total: -3.64 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.42 Total: -40.64 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.27 Total: -10.58 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.73 -4.20 -32.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.178 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds