Wall clock time and date at job start Mon Mar 30 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00425 * 2 1 4 4 H 1.48501 * 109.47665 * 269.71304 * 3 2 1 5 5 H 1.48504 * 109.46794 * 29.71225 * 3 2 1 6 6 H 1.48498 * 109.47294 * 149.70916 * 3 2 1 7 7 C 1.37879 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99871 * 351.87926 * 7 2 1 9 9 C 1.50700 * 120.00125 * 172.15766 * 7 2 1 10 10 H 1.09000 * 109.58566 * 1.85952 * 9 7 2 11 11 C 1.50891 * 109.59249 * 122.14820 * 9 7 2 12 12 C 1.53446 * 111.81609 * 210.67491 * 11 9 7 13 13 O 1.44087 * 112.60537 * 318.85054 * 12 11 9 14 14 C 1.40628 * 116.72806 * 317.99413 * 13 12 11 15 15 C 1.54281 * 109.12299 * 93.90854 * 14 13 12 16 16 N 1.40440 * 111.69022 * 282.77137 * 15 14 13 17 17 C 1.46898 * 111.00210 * 188.30112 * 16 15 14 18 18 C 1.50697 * 109.46709 * 48.32966 * 17 16 15 19 19 C 1.41376 * 126.80186 * 94.71719 * 18 17 16 20 20 C 1.35444 * 103.98896 * 179.88299 * 19 18 17 21 21 O 1.34039 * 106.44482 * 0.36546 * 20 19 18 22 22 N 1.20920 * 111.56808 * 359.74783 * 21 20 19 23 23 H 0.96997 * 119.99799 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.02788 * 331.37106 * 11 9 7 25 25 H 1.08997 * 109.03280 * 90.21226 * 11 9 7 26 26 H 1.08996 * 108.92606 * 197.98229 * 12 11 9 27 27 H 1.08996 * 108.75035 * 79.59398 * 12 11 9 28 28 H 1.08999 * 109.52584 * 334.01629 * 14 13 12 29 29 H 1.08993 * 109.58737 * 213.83729 * 14 13 12 30 30 H 1.08997 * 109.03679 * 162.20509 * 15 14 13 31 31 H 1.09004 * 108.97727 * 43.30020 * 15 14 13 32 32 H 1.08994 * 109.47248 * 168.33031 * 17 16 15 33 33 H 1.08997 * 109.46699 * 288.33143 * 17 16 15 34 34 H 1.08009 * 128.00710 * 0.02562 * 19 18 17 35 35 H 1.08001 * 126.78053 * 180.09126 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5029 2.0429 -1.4000 5 1 1.4437 2.6543 0.6940 6 1 3.5437 1.4418 0.7062 7 6 2.0045 -1.1941 -0.0005 8 1 1.4725 -2.1248 0.1312 9 6 3.5009 -1.2002 -0.1786 10 1 3.8636 -0.1754 -0.2583 11 6 4.1486 -1.8754 1.0052 12 6 5.5408 -1.3006 1.2982 13 8 6.3017 -1.0540 0.0997 14 6 6.2370 -2.0370 -0.9039 15 6 5.1293 -1.6604 -1.9096 16 7 3.8505 -1.9457 -1.4042 17 6 2.8235 -1.7680 -2.4394 18 6 3.2535 -2.4735 -3.6997 19 6 2.9010 -3.7828 -4.0997 20 6 3.5307 -3.9428 -5.2882 21 8 4.1930 -2.8014 -5.5233 22 7 4.0275 -2.0000 -4.6331 23 1 -0.4850 0.8400 -0.0004 24 1 3.5153 -1.7397 1.8821 25 1 4.2433 -2.9414 0.7985 26 1 6.0889 -2.0038 1.9252 27 1 5.4255 -0.3628 1.8415 28 1 6.0074 -3.0027 -0.4537 29 1 7.1946 -2.0945 -1.4213 30 1 5.2805 -2.2216 -2.8317 31 1 5.1958 -0.5944 -2.1275 32 1 1.8802 -2.1887 -2.0913 33 1 2.6939 -0.7053 -2.6439 34 1 2.2728 -4.4908 -3.5794 35 1 3.5078 -4.8189 -5.9194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260149680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:40 Heat of formation + Delta-G solvation = 14.017889 kcal Electronic energy + Delta-G solvation = -19591.833905 eV Core-core repulsion = 16593.161273 eV Total energy + Delta-G solvation = -2998.672632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.90287 -40.72400 -37.86879 -35.53903 -34.44302 -33.39993 -32.50306 -30.27759 -29.00412 -26.72071 -25.10766 -24.05707 -22.48165 -21.53148 -21.06320 -19.37552 -18.61725 -18.54909 -17.66386 -17.17339 -16.61507 -16.31333 -15.92760 -15.68781 -15.26907 -14.73384 -14.55537 -14.11801 -13.75489 -13.59333 -13.21452 -13.18354 -12.94814 -12.40517 -12.34231 -12.11901 -12.04257 -11.89608 -11.46307 -11.22596 -10.95238 -10.75070 -10.51454 -10.36048 -9.04826 -8.39893 -6.40443 0.68488 1.19481 1.25783 1.31764 1.34099 2.21997 2.56285 2.83214 2.90421 3.18531 3.51188 3.74715 3.97938 4.09313 4.24222 4.33957 4.36341 4.38929 4.51812 4.56638 4.63196 4.65159 4.77337 4.85211 4.97987 5.04282 5.08719 5.20647 5.26141 5.41473 5.57407 6.14108 6.18588 6.41577 6.65034 6.77980 7.25218 7.44203 8.75224 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.018362 B = 0.009663 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.483057 B = 2896.983017 C = 3801.468654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.036 3.964 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.189 3.811 10 H 0.003 0.997 11 C -0.134 4.134 12 C 0.061 3.939 13 O -0.411 6.411 14 C 0.076 3.924 15 C 0.041 3.959 16 N -0.541 5.541 17 C 0.167 3.833 18 C 0.002 3.998 19 C -0.230 4.230 20 C -0.040 4.040 21 O 0.098 5.902 22 N -0.401 5.401 23 H 0.268 0.732 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.077 0.923 31 H -0.012 1.012 32 H 0.092 0.908 33 H 0.003 0.997 34 H 0.186 0.814 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 -9.058 -6.156 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.084 3.916 10 H 0.020 0.980 11 C -0.172 4.172 12 C -0.015 4.015 13 O -0.330 6.330 14 C -0.002 4.002 15 C -0.090 4.090 16 N -0.267 5.267 17 C 0.039 3.961 18 C -0.155 4.155 19 C -0.252 4.252 20 C -0.121 4.121 21 O 0.030 5.970 22 N -0.106 5.106 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.006 0.994 32 H 0.110 0.890 33 H 0.021 0.979 34 H 0.204 0.796 35 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 10.436 -8.053 -6.183 14.560 hybrid contribution -0.992 1.131 0.149 1.512 sum 9.444 -6.922 -6.034 13.172 Atomic orbital electron populations 1.69988 1.07412 1.27927 1.51247 1.25599 0.95166 1.01379 0.94304 0.86241 0.80059 0.81337 0.78362 1.21527 1.20283 1.17523 1.20963 0.90769 0.93540 1.48752 0.92920 1.19354 0.94236 0.91128 0.86857 0.97954 1.21994 0.95336 1.00902 0.99006 1.23095 0.91180 1.01484 0.85731 1.87415 1.69323 1.48116 1.28172 1.22520 0.97563 0.91854 0.88220 1.21734 0.91132 0.97043 0.99058 1.59678 1.00918 1.60427 1.05658 1.19876 0.96315 0.95093 0.84802 1.23858 0.98338 0.95858 0.97460 1.22994 1.07071 0.96593 0.98564 1.26882 0.94582 0.92347 0.98302 1.84759 1.54807 1.20478 1.36912 1.73903 1.19788 1.16596 1.00310 0.92306 0.90520 0.91047 0.90503 0.90306 0.91219 0.87469 0.90497 0.99441 0.88961 0.97907 0.79637 0.71311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 2 C 0.04 2.03 5.47 84.65 0.46 2.49 16 3 Si 0.91 45.28 27.12 68.60 1.86 47.14 16 4 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.25 -11.94 6.57 99.48 0.65 -11.28 16 7 C -0.50 -27.12 6.40 25.60 0.16 -26.96 16 8 H 0.05 3.11 8.04 -2.91 -0.02 3.09 16 9 C 0.19 8.88 1.79 43.34 0.08 8.95 16 10 H 0.00 0.14 4.16 -2.39 -0.01 0.13 16 11 C -0.13 -5.24 4.92 30.06 0.15 -5.10 16 12 C 0.06 2.05 6.71 72.13 0.48 2.54 16 13 O -0.41 -15.12 10.13 -145.56 -1.47 -16.59 16 14 C 0.08 2.49 6.43 72.42 0.47 2.95 16 15 C 0.04 1.60 4.78 87.91 0.42 2.02 16 16 N -0.54 -23.37 4.18 -895.50 -3.74 -27.11 16 17 C 0.17 7.49 4.86 85.56 0.42 7.90 16 18 C 0.00 0.07 5.35 43.58 0.23 0.30 16 19 C -0.23 -6.21 11.12 22.40 0.25 -5.96 16 20 C -0.04 -0.78 12.30 67.17 0.83 0.04 16 21 O 0.10 2.70 11.20 71.64 0.80 3.50 16 22 N -0.40 -14.44 10.78 -49.56 -0.53 -14.98 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.08 3.05 7.76 -2.38 -0.02 3.03 16 25 H 0.07 2.65 7.40 -2.39 -0.02 2.63 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.07 2.13 7.11 -2.39 -0.02 2.11 16 29 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.08 2.89 5.44 -2.39 -0.01 2.88 16 31 H -0.01 -0.57 8.09 -2.39 -0.02 -0.59 16 32 H 0.09 4.46 6.87 -2.39 -0.02 4.44 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.27 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -68.19 280.14 2.20 -66.00 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.04 Total: 7.90 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 3.95 Total: -10.81 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.98 Total: -97.14 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.67 Total: -13.09 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.86 Total: 47.14 kcal Total: -68.19 2.20 -66.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.016 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds