Wall clock time and date at job start Mon Mar 30 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 C 1.52997 * 109.47265 * 240.00297 * 2 1 3 5 5 C 1.50696 * 109.47107 * 119.99958 * 2 1 3 6 6 N 1.32488 * 120.37975 * 232.92420 * 5 2 1 7 7 C 1.32289 * 120.91136 * 180.02562 * 6 5 2 8 8 O 1.35450 * 119.17001 * 180.02562 * 7 6 5 9 9 N 1.32317 * 121.66371 * 359.72188 * 7 6 5 10 10 C 1.32756 * 120.66144 * 0.56657 * 9 7 6 11 11 O 1.35509 * 120.47272 * 179.71782 * 10 9 7 12 12 C 1.38181 * 120.37646 * 52.95462 * 5 2 1 13 13 C 1.50703 * 120.76747 * 359.97438 * 12 5 2 14 14 C 1.50699 * 109.47324 * 263.73185 * 13 12 5 15 15 H 1.07999 * 119.99730 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00017 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99796 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47023 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46894 * 120.00409 * 18 16 14 21 21 H 1.48498 * 109.47276 * 240.00612 * 18 16 14 22 22 H 1.09004 * 109.47370 * 282.92937 * 1 2 3 23 23 H 1.08999 * 109.47242 * 42.92297 * 1 2 3 24 24 H 1.09003 * 109.47472 * 162.92738 * 1 2 3 25 25 H 1.09003 * 109.47640 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47492 * 300.00199 * 3 2 1 27 27 H 1.09003 * 109.46990 * 60.00092 * 3 2 1 28 28 H 1.09000 * 109.47006 * 289.57125 * 4 2 1 29 29 H 1.09000 * 109.47326 * 49.57095 * 4 2 1 30 30 H 1.08997 * 109.47271 * 169.57126 * 4 2 1 31 31 H 0.96698 * 113.99738 * 89.99689 * 8 7 6 32 32 H 0.96700 * 114.00017 * 269.71835 * 11 10 9 33 33 H 1.09004 * 109.46765 * 23.72918 * 13 12 5 34 34 H 1.08996 * 109.47096 * 143.72631 * 13 12 5 35 35 H 0.97002 * 120.00000 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 2.9053 -0.1217 2.0345 7 6 3.3536 -0.7357 3.1171 8 8 4.2453 -0.1007 3.9148 9 7 2.9484 -1.9523 3.4436 10 6 2.0793 -2.6040 2.6804 11 8 1.6713 -3.8520 3.0154 12 6 1.5881 -1.9835 1.5325 13 6 0.5955 -2.6853 0.6418 14 6 -0.7950 -2.4936 1.1903 15 1 -0.9449 -1.9212 2.0937 16 6 -1.8757 -3.0490 0.5386 17 7 -1.6930 -3.7464 -0.5613 18 14 -3.5992 -2.8120 1.2188 19 1 -3.5346 -1.9949 2.4572 20 1 -4.4380 -2.1160 0.2102 21 1 -4.1952 -4.1361 1.5296 22 1 -0.3634 0.2299 1.0016 23 1 -0.3634 0.7525 -0.6998 24 1 -0.3634 -0.9824 -0.3017 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.8366 -1.7884 -1.1612 29 1 1.5328 -0.3260 -2.1294 30 1 3.1140 -0.5629 -1.3471 31 1 3.8394 0.4269 4.6163 32 1 2.2174 -4.5576 2.6425 33 1 0.6504 -2.2673 -0.3634 34 1 0.8285 -3.7495 0.6060 35 1 -2.4533 -4.1375 -1.0195 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260170684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:58 Heat of formation + Delta-G solvation = -31.922614 kcal Electronic energy + Delta-G solvation = -19513.502592 eV Core-core repulsion = 16512.837831 eV Total energy + Delta-G solvation = -3000.664762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02019 -37.88334 -37.48811 -35.55749 -33.50798 -32.14055 -31.21182 -27.51427 -26.87194 -26.23376 -23.98845 -23.71569 -21.48741 -20.00668 -18.24794 -17.96717 -17.22104 -16.50229 -15.38180 -14.95801 -14.75452 -14.21670 -13.74101 -13.68747 -13.29288 -12.78672 -12.27634 -12.15819 -11.84195 -11.59123 -11.56651 -11.36623 -11.09673 -10.92314 -10.90113 -10.75148 -10.57066 -10.41685 -9.83161 -9.73598 -9.68505 -9.45321 -8.70411 -8.43870 -8.22309 -6.15470 -4.15854 1.33589 1.43256 3.23851 3.32468 3.33242 3.37889 3.87388 4.23864 4.37821 4.69476 5.19105 5.28593 5.38750 5.48745 5.52261 5.77564 5.96394 5.99764 6.07249 6.19990 6.25329 6.39022 6.51541 6.54888 6.60488 6.79574 6.83808 7.25684 7.29126 7.41106 7.55656 7.74508 7.79680 7.90982 8.15773 8.47014 8.83353 9.44813 10.93870 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.008912 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.176093 B = 3140.998047 C = 3852.805035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.011 4.011 3 C -0.124 4.124 4 C -0.148 4.148 5 C 0.202 3.798 6 N -0.526 5.526 7 C 0.477 3.523 8 O -0.462 6.462 9 N -0.557 5.557 10 C 0.363 3.637 11 O -0.459 6.459 12 C -0.150 4.150 13 C 0.048 3.952 14 C -0.497 4.497 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.120 0.880 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.402 0.598 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 5.422 0.779 8.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 C -0.182 4.182 4 C -0.206 4.206 5 C 0.057 3.943 6 N -0.251 5.251 7 C 0.171 3.829 8 O -0.264 6.264 9 N -0.293 5.293 10 C 0.177 3.823 11 O -0.264 6.264 12 C -0.155 4.155 13 C 0.011 3.989 14 C -0.535 4.535 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.138 0.862 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.259 0.741 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.074 5.792 1.260 9.229 hybrid contribution -1.390 -0.425 0.356 1.497 sum 5.684 5.367 1.616 7.982 Atomic orbital electron populations 1.22488 0.91081 1.06084 1.01598 1.19489 0.97349 0.94555 0.89793 1.21700 1.01086 0.94451 1.00950 1.22121 1.00071 1.02278 0.96114 1.21277 0.88923 0.90029 0.94031 1.67672 1.13195 1.38040 1.06241 1.19635 0.89052 0.85552 0.88613 1.84703 1.30389 1.65640 1.45687 1.67214 1.15074 1.11589 1.35432 1.19001 0.88368 0.87479 0.87476 1.84803 1.53985 1.11864 1.75775 1.22390 0.99896 0.96607 0.96654 1.18677 0.90820 0.95273 0.94103 1.20855 0.89684 1.32998 1.09952 0.92768 1.24891 0.99009 0.95055 0.94986 1.69930 1.31076 1.34484 1.17489 0.86539 0.84426 0.78057 0.79134 1.19774 1.20857 1.20908 0.93040 0.93658 0.86215 0.92469 0.92992 0.92785 0.90275 0.91653 0.93287 0.74090 0.74429 0.92197 0.94930 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.07 37.16 0.26 -2.64 16 2 C -0.01 -0.19 0.75 -155.67 -0.12 -0.30 16 3 C -0.12 -1.88 7.64 37.16 0.28 -1.59 16 4 C -0.15 -2.36 8.14 37.16 0.30 -2.05 16 5 C 0.20 3.92 5.51 -82.33 -0.45 3.47 16 6 N -0.53 -10.01 9.20 -11.02 -0.10 -10.11 16 7 C 0.48 8.97 8.71 -91.28 -0.80 8.18 16 8 O -0.46 -7.19 13.64 -18.04 -0.25 -7.44 16 9 N -0.56 -11.14 10.49 -14.79 -0.16 -11.30 16 10 C 0.36 7.41 7.81 -16.71 -0.13 7.28 16 11 O -0.46 -8.73 12.86 -18.22 -0.23 -8.96 16 12 C -0.15 -3.12 4.87 -104.20 -0.51 -3.63 16 13 C 0.05 1.10 3.70 -29.03 -0.11 0.99 16 14 C -0.50 -12.56 6.45 -34.44 -0.22 -12.78 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.61 5.38 -17.82 -0.10 1.52 16 17 N -0.89 -23.85 13.29 55.43 0.74 -23.12 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.05 1.02 7.91 -51.93 -0.41 0.60 16 23 H 0.04 0.74 8.02 -51.93 -0.42 0.32 16 24 H 0.12 2.58 3.84 -51.93 -0.20 2.38 16 25 H 0.06 0.86 7.98 -51.93 -0.41 0.44 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.38 5.21 -51.93 -0.27 1.11 16 29 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 31 H 0.40 4.13 9.06 45.56 0.41 4.54 16 32 H 0.40 5.40 9.06 45.56 0.41 5.81 16 33 H 0.06 1.35 3.06 -51.93 -0.16 1.19 16 34 H 0.03 0.78 7.82 -51.93 -0.41 0.38 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 286.86 15.07 4.32 4.32 Total: -1.00 -30.13 286.86 -4.96 -35.09 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -2.68 Total: 7.58 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.58 Total: -1.56 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.48 Total: -44.53 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.48 Total: -16.40 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.13 -4.96 -35.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.163 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds